Search of human proteins with 32698930

Search of human proteins with 32698930

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|32698930 lipoma HMGIC fusion partner-like 5 [Homo sapiens]
         (219 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|32698930 lipoma HMGIC fusion partner-like 5 [Homo sapiens]         451   e-127
gi|39752685 lipoma HMGIC fusion partner-like 3 [Homo sapiens]         318   2e-87
gi|38348398 lipoma HMGIC fusion partner-like 4 [Homo sapiens]         295   3e-80
gi|5031865 lipoma HMGIC fusion partner [Homo sapiens]                  74   7e-14
gi|32698676 lipoma HMGIC fusion partner-like 2 [Homo sapiens]          66   3e-11
gi|30039704 lipoma HMGIC fusion partner-like 1 [Homo sapiens]          62   4e-10
gi|48717249 transmembrane protein 211 [Homo sapiens]                   43   2e-04
gi|5730081 T-box, brain, 1 [Homo sapiens]                              28   8.0  

>gi|32698930 lipoma HMGIC fusion partner-like 5 [Homo sapiens]
          Length = 219

 Score =  451 bits (1159), Expect = e-127
 Identities = 219/219 (100%), Positives = 219/219 (100%)

Query: 1   MVKLLPAQEAAKIYHTNYVRNSRAVGVMWGTLTICFSVLVMALFIQPYWIGDSVNTPQAG 60
           MVKLLPAQEAAKIYHTNYVRNSRAVGVMWGTLTICFSVLVMALFIQPYWIGDSVNTPQAG
Sbjct: 1   MVKLLPAQEAAKIYHTNYVRNSRAVGVMWGTLTICFSVLVMALFIQPYWIGDSVNTPQAG 60

Query: 61  YFGLFSYCVGNVLSSELICKGGPLDFSSIPSRAFKTAMFFVALGMFLIIGSIICFSLFFI 120
           YFGLFSYCVGNVLSSELICKGGPLDFSSIPSRAFKTAMFFVALGMFLIIGSIICFSLFFI
Sbjct: 61  YFGLFSYCVGNVLSSELICKGGPLDFSSIPSRAFKTAMFFVALGMFLIIGSIICFSLFFI 120

Query: 121 CNTATVYKICAWMQLAAATGLMIGCLVYPDGWDSSEVRRMCGEQTGKYTLGHCTIRWAFM 180
           CNTATVYKICAWMQLAAATGLMIGCLVYPDGWDSSEVRRMCGEQTGKYTLGHCTIRWAFM
Sbjct: 121 CNTATVYKICAWMQLAAATGLMIGCLVYPDGWDSSEVRRMCGEQTGKYTLGHCTIRWAFM 180

Query: 181 LAILSIGDALILSFLAFVLGYRQDKLLPDDYKADGTEEV 219
           LAILSIGDALILSFLAFVLGYRQDKLLPDDYKADGTEEV
Sbjct: 181 LAILSIGDALILSFLAFVLGYRQDKLLPDDYKADGTEEV 219


>gi|39752685 lipoma HMGIC fusion partner-like 3 [Homo sapiens]
          Length = 236

 Score =  318 bits (816), Expect = 2e-87
 Identities = 143/211 (67%), Positives = 175/211 (82%)

Query: 4   LLPAQEAAKIYHTNYVRNSRAVGVMWGTLTICFSVLVMALFIQPYWIGDSVNTPQAGYFG 63
           +LPAQEAAK+YHTNYVRNSRA+GV+W   TICF+++ +  FIQPYWIGD V+TPQAGYFG
Sbjct: 15  MLPAQEAAKLYHTNYVRNSRAIGVLWAIFTICFAIVNVVCFIQPYWIGDGVDTPQAGYFG 74

Query: 64  LFSYCVGNVLSSELICKGGPLDFSSIPSRAFKTAMFFVALGMFLIIGSIICFSLFFICNT 123
           LF YC+GN  S EL C+G   DFS++PS AFK A FF+ L M LII  IICF+LFF CNT
Sbjct: 75  LFHYCIGNGFSRELTCRGSFTDFSTLPSGAFKAASFFIGLSMMLIIACIICFTLFFFCNT 134

Query: 124 ATVYKICAWMQLAAATGLMIGCLVYPDGWDSSEVRRMCGEQTGKYTLGHCTIRWAFMLAI 183
           ATVYKICAWMQL +A  L++GC+++PDGWDS EV+RMCGE+T KYTLG C++RWA++LAI
Sbjct: 135 ATVYKICAWMQLTSAACLVLGCMIFPDGWDSDEVKRMCGEKTDKYTLGACSVRWAYILAI 194

Query: 184 LSIGDALILSFLAFVLGYRQDKLLPDDYKAD 214
           + I DALILSFLAFVLG RQD L+ ++ KA+
Sbjct: 195 IGILDALILSFLAFVLGNRQDSLMAEELKAE 225


>gi|38348398 lipoma HMGIC fusion partner-like 4 [Homo sapiens]
          Length = 247

 Score =  295 bits (754), Expect = 3e-80
 Identities = 134/217 (61%), Positives = 174/217 (80%), Gaps = 1/217 (0%)

Query: 4   LLPAQEAAKIYHTNYVRNSRAVGVMWGTLTICFSVLVMALFIQPYWIGDSVNTPQAGYFG 63
           +LP+QEA+K+YH +Y+RNSRA+GV+W   TICF+++ + +FIQPYW+GDSV+TP+ GYFG
Sbjct: 1   MLPSQEASKLYHEHYMRNSRAIGVLWAIFTICFAIINVVVFIQPYWVGDSVSTPKPGYFG 60

Query: 64  LFSYCVGNVLSS-ELICKGGPLDFSSIPSRAFKTAMFFVALGMFLIIGSIICFSLFFICN 122
           LF YCVG+ L+  EL C+G   DFS+IPS AFK A FFV L M LI+G I CFSLFF CN
Sbjct: 61  LFHYCVGSGLAGRELTCRGSFTDFSTIPSSAFKAAAFFVLLSMVLILGCITCFSLFFFCN 120

Query: 123 TATVYKICAWMQLAAATGLMIGCLVYPDGWDSSEVRRMCGEQTGKYTLGHCTIRWAFMLA 182
           TATVYKICAWMQL AA  L++GC+++PDGWD+  +R MCG +TGKY+LG C++RWA++LA
Sbjct: 121 TATVYKICAWMQLLAALCLVLGCMIFPDGWDAETIRDMCGAKTGKYSLGDCSVRWAYILA 180

Query: 183 ILSIGDALILSFLAFVLGYRQDKLLPDDYKADGTEEV 219
           I+ I +ALILSFLAFVLG RQ  LL ++ K +  + V
Sbjct: 181 IIGILNALILSFLAFVLGNRQTDLLQEELKPENKDFV 217


>gi|5031865 lipoma HMGIC fusion partner [Homo sapiens]
          Length = 200

 Score = 74.3 bits (181), Expect = 7e-14
 Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 13/189 (6%)

Query: 26  GVMWGTLTICFSVLVMALFIQPYWI-GDSVNTPQA-GYFGLFSYCVGNVLSSELICK--- 80
           GV+W  L+   +      F  PYW+ G  +  P + G F   SY V +     ++     
Sbjct: 9   GVIWALLSFLCAATSCVGFFMPYWLWGSQLGKPVSFGTFRRCSYPVHDESRQMMVMVEEC 68

Query: 81  GGPLDFSSIPSRAFKTAMFFVALGMFLIIGSIICFSLFFICNTA-----TVYKICAWMQL 135
           G    F  IPS  ++       LG  L++  ++  +    C  +     TV ++   +Q 
Sbjct: 69  GRYASFQGIPSAEWRICTIVTGLGCGLLL--LVALTALMGCCVSDLISRTVGRVAGGIQF 126

Query: 136 AAATGLMIGCLVYPDGWDSSEVRRMCGEQTGKYTLGHCTIRWAFMLAILSIGDALIL-SF 194
                +  GC +YP GWDS EVR+ CG  +G++ LG C I WA+         A++L ++
Sbjct: 127 LGGLLIGAGCALYPLGWDSEEVRQTCGYTSGQFDLGKCEIGWAYYCTGAGATAAMLLCTW 186

Query: 195 LAFVLGYRQ 203
           LA   G +Q
Sbjct: 187 LACFSGKKQ 195


>gi|32698676 lipoma HMGIC fusion partner-like 2 [Homo sapiens]
          Length = 228

 Score = 65.9 bits (159), Expect = 3e-11
 Identities = 42/182 (23%), Positives = 79/182 (43%), Gaps = 13/182 (7%)

Query: 45  IQPYWIGDSVNTPQAGYFGLFSYCVGNV----LSSELICKGGPLDFSSIPSRAFKTAMFF 100
           ++P   G     P     G+++ C+ N        + +C      F  I S  ++    F
Sbjct: 44  VEPAGPGGGSPEPYHPTLGIYARCIRNPGVQHFQRDTLCGPYAESFGEIASGFWQATAIF 103

Query: 101 VALGMFLIIGSIICFSLFFICNTA----TVYKICAWMQLAAATGLMIGCLVYPDGWDSSE 156
           +A+G+F++   +   S+F +C  +    +++ +C  +Q  A   L++G ++YP GW   +
Sbjct: 104 LAVGIFILC-MVALVSVFTMCVQSIMKKSIFNVCGLLQGIAGLFLILGLILYPAGWGCQK 162

Query: 157 VRRMCGEQTGKYTLGHCTIRWAFMLAILSIGDALILSFLAFVLGYRQDKLLPDDYKADGT 216
               CG     Y  G C++ WAF  AI       +L+F+  V   + +     D   +  
Sbjct: 163 AIDYCGHYASAYKPGDCSLGWAFYTAI----GGTVLTFICAVFSAQAEIATSSDKVQEEI 218

Query: 217 EE 218
           EE
Sbjct: 219 EE 220


>gi|30039704 lipoma HMGIC fusion partner-like 1 [Homo sapiens]
          Length = 220

 Score = 62.0 bits (149), Expect = 4e-10
 Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 15/169 (8%)

Query: 25  VGVMWGTLTICFSVLVMALFIQPYWI-GDSVNTPQAGYFGLFSYC------VGNVLSSEL 77
           VG +W  L++  +V     +  PYW+ G  +  P +  F  F  C       G+ L    
Sbjct: 8   VGTLWAFLSLVTAVTSSTSYFLPYWLFGSQMGKPVS--FSTFRRCNYPVRGEGHSLIMVE 65

Query: 78  ICKGGPLDFSSIPSRAFKTAMFFVALGMFLIIGSIICFSLFFICNTATVYKICAWMQLAA 137
            C G    F++IPS A++        G  L++  +   ++   C    + ++      AA
Sbjct: 66  EC-GRYASFNAIPSLAWQMCTVVTGAGCALLL-LVALAAVLGCCMEELISRMMGRCMGAA 123

Query: 138 --ATGLMI--GCLVYPDGWDSSEVRRMCGEQTGKYTLGHCTIRWAFMLA 182
               GL+I  GC +YP GW+S E+ + CG  + ++ LG C + WA+  A
Sbjct: 124 QFVGGLLISSGCALYPLGWNSPEIMQTCGNVSNQFQLGTCRLGWAYYCA 172


>gi|48717249 transmembrane protein 211 [Homo sapiens]
          Length = 129

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 133 MQLAAATGLMIGCLVYPDGWDSSEVRRMCGEQTGKYTLGHCTIRWAFMLAILSIGDALIL 192
           +Q  AAT +++G L++P G  S  ++ +C E +  Y  G C + W +M AIL+   A +L
Sbjct: 38  VQAVAATAMIVGLLIFPIGLASPFIKEVC-EASSMYYGGKCRLGWGYMTAILNAVLASLL 96

Query: 193 SFLAF 197
             +++
Sbjct: 97  PIISW 101


>gi|5730081 T-box, brain, 1 [Homo sapiens]
          Length = 682

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 133 MQLAAATGLMIGCLVYPDGWDSSEVRRMCGEQTG 166
           +Q A  TG  +G    P GW +    + CG ++G
Sbjct: 526 LQAAGCTGRPLGYYADPSGWGARSPPQYCGTKSG 559


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.329    0.142    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,728,372
Number of Sequences: 37866
Number of extensions: 293013
Number of successful extensions: 695
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 682
Number of HSP's gapped (non-prelim): 8
length of query: 219
length of database: 18,247,518
effective HSP length: 98
effective length of query: 121
effective length of database: 14,536,650
effective search space: 1758934650
effective search space used: 1758934650
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.