Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FAM116A Sequence: fasta or formatted (608aa) NCBI GI: 32698777
Description:

hypothetical protein LOC201627

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         28           2
 C cysteine            2.0         12           1
 D aspartate           5.4         33           2
 E glutamate           6.4         39           2
 F phenylalanine       4.8         29           2
 G glycine             5.4         33           2
 H histidine           2.8         17           1
 I isoleucine          5.1         31           2
 K lysine              7.4         45           2
 L leucine            12.3         75           3
 M methionine          1.6         10           1
 N asparagine          1.8         11           1
 P proline             7.4         45           2
 Q glutamine           4.9         30           2
 R arginine            5.4         33           2
 S serine              5.4         33           2
 T threonine           5.6         34           2
 V valine              6.7         41           2
 W tryptophan          1.5          9           1
 Y tyrosine            3.3         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC201627 
FAM116B               0.570   hypothetical protein LOC414918 
SBF2                  0.010   SET binding factor 2 
AVL9                  0.008   AVL9 homolog (S. cerevisiase) 
SOX12                 0.008   SRY (sex determining region Y)-box 12 
LMTK3                 0.007   lemur tyrosine kinase 3 
TSG101                0.007   tumor susceptibility gene 101 
FAM186A               0.006   family with sequence similarity 186, member A [Homo...
DMAP1                 0.006   DNA methyltransferase 1 associated protein 1 
DMAP1                 0.006   DNA methyltransferase 1 associated protein 1 
DMAP1                 0.006   DNA methyltransferase 1 associated protein 1 
EVI5                  0.006   ecotropic viral integration site 5 
CAGE1                 0.005   cancer antigen 1 
GOLGA1                0.005   golgin 97 
MIOS                  0.004   missing oocyte, meiosis regulator, homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press