Search of human proteins with 31791000

Search of human proteins with 31791000

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|31791000 keratin associated protein 23-1 [Homo sapiens]
         (65 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|31791000 keratin associated protein 23-1 [Homo sapiens]            144   2e-35
gi|31791006 keratin associated protein 13-2 [Homo sapiens]             59   6e-10
gi|109288006 keratin associated protein 13-1 [Homo sapiens]            57   3e-09
gi|31791002 keratin associated protein 13-3 [Homo sapiens]             55   1e-08
gi|31791004 keratin associated protein 13-4 [Homo sapiens]             49   1e-06
gi|31790998 keratin associated protein 15-1 [Homo sapiens]             36   0.008
gi|239757272 PREDICTED: hypothetical protein [Homo sapiens]            27   3.5  
gi|239751775 PREDICTED: hypothetical protein [Homo sapiens]            27   3.5  
gi|239746270 PREDICTED: hypothetical protein XP_002343719 [Homo ...    27   3.5  

>gi|31791000 keratin associated protein 23-1 [Homo sapiens]
          Length = 65

 Score =  144 bits (362), Expect = 2e-35
 Identities = 65/65 (100%), Positives = 65/65 (100%)

Query: 1  MSYNCCCGNFSSHSCEGYLCYSGYSRGGSSYPSNLVYSTEPLISQHLPAGFLSLQGLSGD 60
          MSYNCCCGNFSSHSCEGYLCYSGYSRGGSSYPSNLVYSTEPLISQHLPAGFLSLQGLSGD
Sbjct: 1  MSYNCCCGNFSSHSCEGYLCYSGYSRGGSSYPSNLVYSTEPLISQHLPAGFLSLQGLSGD 60

Query: 61 LLGNP 65
          LLGNP
Sbjct: 61 LLGNP 65


>gi|31791006 keratin associated protein 13-2 [Homo sapiens]
          Length = 175

 Score = 59.3 bits (142), Expect = 6e-10
 Identities = 29/40 (72%), Positives = 30/40 (75%), Gaps = 1/40 (2%)

Query: 1  MSYNCCCGNFSSHSCEGYLCYSGYSRGGSSYPSNLVYSTE 40
          MSYNCC GNFSS SC  YL Y   SR G SYPSNLVYST+
Sbjct: 1  MSYNCCSGNFSSRSCGDYLRYPASSR-GFSYPSNLVYSTD 39


>gi|109288006 keratin associated protein 13-1 [Homo sapiens]
          Length = 172

 Score = 57.0 bits (136), Expect = 3e-09
 Identities = 28/40 (70%), Positives = 29/40 (72%), Gaps = 1/40 (2%)

Query: 1  MSYNCCCGNFSSHSCEGYLCYSGYSRGGSSYPSNLVYSTE 40
          MSYNCC GNFSS SC GYL Y   S  G SYPSN VYST+
Sbjct: 1  MSYNCCSGNFSSRSCGGYLHYPA-SSCGFSYPSNQVYSTD 39


>gi|31791002 keratin associated protein 13-3 [Homo sapiens]
          Length = 172

 Score = 55.1 bits (131), Expect = 1e-08
 Identities = 29/40 (72%), Positives = 30/40 (75%), Gaps = 1/40 (2%)

Query: 1  MSYNCCCGNFSSHSCEGYLCYSGYSRGGSSYPSNLVYSTE 40
          MSYNCC  NFSS S  GYL Y G S  GSSYPSNLVYST+
Sbjct: 1  MSYNCCSRNFSSCSHGGYLHYPG-SSCGSSYPSNLVYSTD 39


>gi|31791004 keratin associated protein 13-4 [Homo sapiens]
          Length = 160

 Score = 48.5 bits (114), Expect = 1e-06
 Identities = 25/39 (64%), Positives = 26/39 (66%), Gaps = 6/39 (15%)

Query: 1  MSYNCCCGNFSSHSCEGYLCYSGYSRGGSSYPSNLVYST 39
          MSYNCC  NFSS S  GYL Y G      SYPS+LVYST
Sbjct: 1  MSYNCCSRNFSSRSFGGYLYYPG------SYPSSLVYST 33


>gi|31790998 keratin associated protein 15-1 [Homo sapiens]
          Length = 137

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 20/38 (52%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 1  MSYNCCCGNFSSHSCEGYLCYSGYSRGGSSYPSNLVYS 38
          MSYNC  GNFSS     YL Y   S     YPSN +YS
Sbjct: 1  MSYNCSSGNFSSCCFGSYLRYP-VSTYNLFYPSNAIYS 37


>gi|239757272 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 314

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 14/36 (38%), Positives = 18/36 (50%)

Query: 21  YSGYSRGGSSYPSNLVYSTEPLISQHLPAGFLSLQG 56
           +SG   GGS +P  L  S   +    +PAGF  L G
Sbjct: 141 FSGRRLGGSPWPRWLASSRRRIRGTGVPAGFCHLDG 176


>gi|239751775 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 314

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 14/36 (38%), Positives = 18/36 (50%)

Query: 21  YSGYSRGGSSYPSNLVYSTEPLISQHLPAGFLSLQG 56
           +SG   GGS +P  L  S   +    +PAGF  L G
Sbjct: 141 FSGRRLGGSPWPRWLASSRRRIRGTGVPAGFCHLDG 176


>gi|239746270 PREDICTED: hypothetical protein XP_002343719 [Homo
           sapiens]
          Length = 314

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 14/36 (38%), Positives = 18/36 (50%)

Query: 21  YSGYSRGGSSYPSNLVYSTEPLISQHLPAGFLSLQG 56
           +SG   GGS +P  L  S   +    +PAGF  L G
Sbjct: 141 FSGRRLGGSPWPRWLASSRRRIRGTGVPAGFCHLDG 176


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.137    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,946,054
Number of Sequences: 37866
Number of extensions: 111876
Number of successful extensions: 237
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 224
Number of HSP's gapped (non-prelim): 9
length of query: 65
length of database: 18,247,518
effective HSP length: 38
effective length of query: 27
effective length of database: 16,808,610
effective search space: 453832470
effective search space used: 453832470
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.