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Search of human proteins with 30725877
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30725877 G protein-coupled receptor 180 precursor [Homo
sapiens]
(440 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30725877 G protein-coupled receptor 180 precursor [Homo sapiens] 894 0.0
gi|110556629 transmembrane protein 145 [Homo sapiens] 67 2e-11
gi|219842346 NADPH oxidase 4 isoform b [Homo sapiens] 30 4.4
gi|8393843 NADPH oxidase 4 isoform a [Homo sapiens] 30 4.4
gi|239755407 PREDICTED: hypothetical protein [Homo sapiens] 30 5.7
gi|239749905 PREDICTED: hypothetical protein XP_002347200 [Homo ... 30 5.7
gi|239744205 PREDICTED: hypothetical protein XP_002343055 [Homo ... 30 5.7
gi|57164951 non imprinted in Prader-Willi/Angelman syndrome 2 is... 30 5.7
gi|57013272 non imprinted in Prader-Willi/Angelman syndrome 2 is... 30 5.7
gi|57164953 non imprinted in Prader-Willi/Angelman syndrome 2 is... 30 5.7
gi|57013274 non imprinted in Prader-Willi/Angelman syndrome 2 is... 30 5.7
>gi|30725877 G protein-coupled receptor 180 precursor [Homo sapiens]
Length = 440
Score = 894 bits (2310), Expect = 0.0
Identities = 440/440 (100%), Positives = 440/440 (100%)
Query: 1 MGGLRLLAVALTCCWWPQGSQGKTLRGSFSSTAAQDAQGQRIGHFEFHGDHALLCVRINN 60
MGGLRLLAVALTCCWWPQGSQGKTLRGSFSSTAAQDAQGQRIGHFEFHGDHALLCVRINN
Sbjct: 1 MGGLRLLAVALTCCWWPQGSQGKTLRGSFSSTAAQDAQGQRIGHFEFHGDHALLCVRINN 60
Query: 61 IAVAVGKEAKLYLFQAQEWLKLQQSSHGYSCSEKLSKAQLTMTMNQTEHNLTVSQIPSPQ 120
IAVAVGKEAKLYLFQAQEWLKLQQSSHGYSCSEKLSKAQLTMTMNQTEHNLTVSQIPSPQ
Sbjct: 61 IAVAVGKEAKLYLFQAQEWLKLQQSSHGYSCSEKLSKAQLTMTMNQTEHNLTVSQIPSPQ 120
Query: 121 TWHVFYADKYTCQDDKENSQVEDIPFEMVLLNPDAEGNPFDHFSAGESGLHEFFFLLVLV 180
TWHVFYADKYTCQDDKENSQVEDIPFEMVLLNPDAEGNPFDHFSAGESGLHEFFFLLVLV
Sbjct: 121 TWHVFYADKYTCQDDKENSQVEDIPFEMVLLNPDAEGNPFDHFSAGESGLHEFFFLLVLV 180
Query: 181 YFVIACIYAQSLWQAIKKGGPMHMILKVLTTALLLQAGSALANYIHFSSYSKDGIGVPFM 240
YFVIACIYAQSLWQAIKKGGPMHMILKVLTTALLLQAGSALANYIHFSSYSKDGIGVPFM
Sbjct: 181 YFVIACIYAQSLWQAIKKGGPMHMILKVLTTALLLQAGSALANYIHFSSYSKDGIGVPFM 240
Query: 241 GSLAEFFDIASQIQMLYLLLSLCMGWTIVRMKKSQSRPLQWDSTPASTGIAVFIVMTQSV 300
GSLAEFFDIASQIQMLYLLLSLCMGWTIVRMKKSQSRPLQWDSTPASTGIAVFIVMTQSV
Sbjct: 241 GSLAEFFDIASQIQMLYLLLSLCMGWTIVRMKKSQSRPLQWDSTPASTGIAVFIVMTQSV 300
Query: 301 LLLWEQFEDISHHSYHSHHNLAGILLIVLRICLALSLGCGLYQIITVERSTLKREFYITF 360
LLLWEQFEDISHHSYHSHHNLAGILLIVLRICLALSLGCGLYQIITVERSTLKREFYITF
Sbjct: 301 LLLWEQFEDISHHSYHSHHNLAGILLIVLRICLALSLGCGLYQIITVERSTLKREFYITF 360
Query: 361 AKGCILWFLCHPVLACISVIFSDYQRDKVITIGVILCQSVSMVILYRLFLSHSLYWEVSS 420
AKGCILWFLCHPVLACISVIFSDYQRDKVITIGVILCQSVSMVILYRLFLSHSLYWEVSS
Sbjct: 361 AKGCILWFLCHPVLACISVIFSDYQRDKVITIGVILCQSVSMVILYRLFLSHSLYWEVSS 420
Query: 421 LSSVTLPLTISSGHKSRPHF 440
LSSVTLPLTISSGHKSRPHF
Sbjct: 421 LSSVTLPLTISSGHKSRPHF 440
>gi|110556629 transmembrane protein 145 [Homo sapiens]
Length = 493
Score = 67.4 bits (163), Expect = 2e-11
Identities = 93/387 (24%), Positives = 162/387 (41%), Gaps = 41/387 (10%)
Query: 17 PQGSQGKTLRGSFSSTAAQDAQGQRIGHFEFHGDHALLCVRINNIAVAVGKEAKLYLFQA 76
P ++ K +RG+ SS + F F D+ L R + LY
Sbjct: 24 PPRARAKYVRGNLSSKE----DWVFLTRFCFLSDYGRLDFRFRYPEAKCCQNILLYFDDP 79
Query: 77 QEWLKLQQSSHGYSCSEKLSKAQLTMTMNQTEHNLTVS------QIPSPQTWHVFYADKY 130
+W + ++ + L+K + N NLT Q+ S +
Sbjct: 80 SQWPAVYKAGD----KDCLAKESVIRPENNQVINLTTQYAWSGCQVVSEEGTRYLSCSSG 135
Query: 131 TCQDDKENSQVEDIPFEMVLLNPDAEGNPF--DHFSAGESGLHEF---FFLLVLVYFVIA 185
+ Q+E +EMVL N G F HFSA E G+ E F L+ ++ F ++
Sbjct: 136 RSFRSGDGLQLE---YEMVLTN----GKSFWTRHFSADEFGILETDVTFLLIFILIFFLS 188
Query: 186 CIYAQSLWQAIKKGGPMHMILKVLTTALLLQAGSALANYIHFSSYSKDGIGVPFMGSLAE 245
C + L K +H K+ A ++ S L I++ Y+ DGIG + LA+
Sbjct: 189 CYFGYLL----KGRQLLHTTYKMFMAAAGVEVLSLLFFCIYWGQYATDGIGNESVKILAK 244
Query: 246 FFDIASQIQMLYLLLSLCMGWTIVRMKKSQSRPLQWDSTPASTGIAVFIVMTQSVLLLWE 305
+S + L +L+ L G+T+ R + S + S S + ++ +T VLL++E
Sbjct: 245 LLFSSSFLIFLLMLILLGKGFTVTRGRISHA-----GSVKLSVYMTLY-TLTHVVLLIYE 298
Query: 306 -QFEDISHHSYHSHHNLAGILLIVLRICLALSLGCGLYQIITVERSTLKREFYITFAKGC 364
+F D Y ++ + AG LI L++ + + ++++ K+ FY+ F
Sbjct: 299 AEFFDPGQVLY-TYESPAGYGLIGLQVAAYVWFCYAV--LVSLRHFPEKQPFYVPFFAAY 355
Query: 365 ILWFLCHPVLACISVI-FSDYQRDKVI 390
LWF PV+A I+ + R+K++
Sbjct: 356 TLWFFAVPVMALIANFGIPKWAREKIV 382
>gi|219842346 NADPH oxidase 4 isoform b [Homo sapiens]
Length = 538
Score = 30.0 bits (66), Expect = 4.4
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 279 LQWDSTPASTGI---AVFIVMTQSVLLLWEQFEDISH-HSYHSHHNLAGILLIVLRICLA 334
+ W S A+ G+ +FI ++ +VLL W+ F + YH H + G+ L + R +
Sbjct: 3 VSWRSWLANEGVKHLCLFIWLSMNVLLFWKTFLLYNQGPEYHYLHQMLGLGLCLSRASAS 62
Query: 335 -LSLGCGL 341
L+L C L
Sbjct: 63 VLNLNCSL 70
>gi|8393843 NADPH oxidase 4 isoform a [Homo sapiens]
Length = 578
Score = 30.0 bits (66), Expect = 4.4
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 279 LQWDSTPASTGI---AVFIVMTQSVLLLWEQFEDISH-HSYHSHHNLAGILLIVLRICLA 334
+ W S A+ G+ +FI ++ +VLL W+ F + YH H + G+ L + R +
Sbjct: 3 VSWRSWLANEGVKHLCLFIWLSMNVLLFWKTFLLYNQGPEYHYLHQMLGLGLCLSRASAS 62
Query: 335 -LSLGCGL 341
L+L C L
Sbjct: 63 VLNLNCSL 70
>gi|239755407 PREDICTED: hypothetical protein [Homo sapiens]
Length = 123
Score = 29.6 bits (65), Expect = 5.7
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 279 LQWDSTPASTGIAVFIVMTQSVLLLWEQFEDISHHSYHSHHNLAGILLIVLRICLALSLG 338
++W+ + + + SVL+ + F+ + S + H L + L+VL +C + SL
Sbjct: 23 VRWNRRQPHSAFLIASHLFLSVLVWFNSFQGLELESENPRHLLWNVCLVVL-VCPSSSLA 81
Query: 339 C--GLYQ--IITVERSTLKREFYITFA 361
C +YQ +VE KR+ FA
Sbjct: 82 CRFQVYQRTFCSVESHRTKRKILQLFA 108
>gi|239749905 PREDICTED: hypothetical protein XP_002347200 [Homo
sapiens]
Length = 123
Score = 29.6 bits (65), Expect = 5.7
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 279 LQWDSTPASTGIAVFIVMTQSVLLLWEQFEDISHHSYHSHHNLAGILLIVLRICLALSLG 338
++W+ + + + SVL+ + F+ + S + H L + L+VL +C + SL
Sbjct: 23 VRWNRRQPHSAFLIASHLFLSVLVWFNSFQGLELESENPRHLLWNVCLVVL-VCPSSSLA 81
Query: 339 C--GLYQ--IITVERSTLKREFYITFA 361
C +YQ +VE KR+ FA
Sbjct: 82 CRFQVYQRTFCSVESHRTKRKILQLFA 108
>gi|239744205 PREDICTED: hypothetical protein XP_002343055 [Homo
sapiens]
Length = 123
Score = 29.6 bits (65), Expect = 5.7
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 279 LQWDSTPASTGIAVFIVMTQSVLLLWEQFEDISHHSYHSHHNLAGILLIVLRICLALSLG 338
++W+ + + + SVL+ + F+ + S + H L + L+VL +C + SL
Sbjct: 23 VRWNRRQPHSAFLIASHLFLSVLVWFNSFQGLELESENPRHLLWNVCLVVL-VCPSSSLA 81
Query: 339 C--GLYQ--IITVERSTLKREFYITFA 361
C +YQ +VE KR+ FA
Sbjct: 82 CRFQVYQRTFCSVESHRTKRKILQLFA 108
>gi|57164951 non imprinted in Prader-Willi/Angelman syndrome 2
isoform b [Homo sapiens]
Length = 341
Score = 29.6 bits (65), Expect = 5.7
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 13/118 (11%)
Query: 319 HNLAGILLIVLRICLALSLGCGLYQIITVERSTLKREFYITFAKGCILWFLCHPVLACIS 378
H LA ILL+ L +C++ + L + + + +++ Y F VL C +
Sbjct: 196 HPLAWILLLSLIVCVSTQINY-LNRALDIFNTSIVTPIYYV--------FFTTSVLTCSA 246
Query: 379 VIFSDYQRDKVITIGVILCQSVSMVILYRLFLSHSLYWEVSSLSSVTLPLTISSGHKS 436
++F ++Q V VI S I+ +FL H+ ++ S S +LP++ K+
Sbjct: 247 ILFKEWQDMPV--DDVIGTLSGFFTIIVGIFLLHA--FKDVSFSLASLPVSFRKDEKA 300
>gi|57013272 non imprinted in Prader-Willi/Angelman syndrome 2
isoform a [Homo sapiens]
Length = 360
Score = 29.6 bits (65), Expect = 5.7
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 13/118 (11%)
Query: 319 HNLAGILLIVLRICLALSLGCGLYQIITVERSTLKREFYITFAKGCILWFLCHPVLACIS 378
H LA ILL+ L +C++ + L + + + +++ Y F VL C +
Sbjct: 215 HPLAWILLLSLIVCVSTQINY-LNRALDIFNTSIVTPIYYV--------FFTTSVLTCSA 265
Query: 379 VIFSDYQRDKVITIGVILCQSVSMVILYRLFLSHSLYWEVSSLSSVTLPLTISSGHKS 436
++F ++Q V VI S I+ +FL H+ ++ S S +LP++ K+
Sbjct: 266 ILFKEWQDMPV--DDVIGTLSGFFTIIVGIFLLHA--FKDVSFSLASLPVSFRKDEKA 319
>gi|57164953 non imprinted in Prader-Willi/Angelman syndrome 2
isoform a [Homo sapiens]
Length = 360
Score = 29.6 bits (65), Expect = 5.7
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 13/118 (11%)
Query: 319 HNLAGILLIVLRICLALSLGCGLYQIITVERSTLKREFYITFAKGCILWFLCHPVLACIS 378
H LA ILL+ L +C++ + L + + + +++ Y F VL C +
Sbjct: 215 HPLAWILLLSLIVCVSTQINY-LNRALDIFNTSIVTPIYYV--------FFTTSVLTCSA 265
Query: 379 VIFSDYQRDKVITIGVILCQSVSMVILYRLFLSHSLYWEVSSLSSVTLPLTISSGHKS 436
++F ++Q V VI S I+ +FL H+ ++ S S +LP++ K+
Sbjct: 266 ILFKEWQDMPV--DDVIGTLSGFFTIIVGIFLLHA--FKDVSFSLASLPVSFRKDEKA 319
>gi|57013274 non imprinted in Prader-Willi/Angelman syndrome 2
isoform a [Homo sapiens]
Length = 360
Score = 29.6 bits (65), Expect = 5.7
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 13/118 (11%)
Query: 319 HNLAGILLIVLRICLALSLGCGLYQIITVERSTLKREFYITFAKGCILWFLCHPVLACIS 378
H LA ILL+ L +C++ + L + + + +++ Y F VL C +
Sbjct: 215 HPLAWILLLSLIVCVSTQINY-LNRALDIFNTSIVTPIYYV--------FFTTSVLTCSA 265
Query: 379 VIFSDYQRDKVITIGVILCQSVSMVILYRLFLSHSLYWEVSSLSSVTLPLTISSGHKS 436
++F ++Q V VI S I+ +FL H+ ++ S S +LP++ K+
Sbjct: 266 ILFKEWQDMPV--DDVIGTLSGFFTIIVGIFLLHA--FKDVSFSLASLPVSFRKDEKA 319
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.137 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,800,564
Number of Sequences: 37866
Number of extensions: 639050
Number of successful extensions: 2161
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2158
Number of HSP's gapped (non-prelim): 11
length of query: 440
length of database: 18,247,518
effective HSP length: 105
effective length of query: 335
effective length of database: 14,271,588
effective search space: 4780981980
effective search space used: 4780981980
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.