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Search of human proteins with 30425510
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30425510 zinc finger and BTB domain containing 8 opposite
strand [Homo sapiens]
(179 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30425510 zinc finger and BTB domain containing 8 opposite str... 366 e-102
gi|169164528 PREDICTED: similar to zinc finger and BTB domain co... 223 7e-59
gi|113414298 PREDICTED: similar to zinc finger and BTB domain co... 223 7e-59
gi|113413492 PREDICTED: similar to zinc finger and BTB domain co... 223 7e-59
gi|239748466 PREDICTED: similar to zinc finger and BTB domain co... 198 2e-51
gi|110238585 hypothetical protein LOC84734 [Homo sapiens] 32 0.38
gi|189409125 transcription factor Dp family, member 3 [Homo sapi... 30 1.1
gi|4559408 colony stimulating factor 2 receptor, beta precursor ... 28 3.2
gi|63252910 IQ motif and WD repeats 1 isoform b [Homo sapiens] 27 7.2
gi|63252908 IQ motif and WD repeats 1 isoform a [Homo sapiens] 27 7.2
gi|156564238 hypothetical protein LOC129293 [Homo sapiens] 27 7.2
gi|65508004 Wilms tumor 1 isoform D [Homo sapiens] 27 9.4
gi|65507908 Wilms tumor 1 isoform C [Homo sapiens] 27 9.4
gi|65507817 Wilms tumor 1 isoform B [Homo sapiens] 27 9.4
gi|65507714 Wilms tumor 1 isoform A [Homo sapiens] 27 9.4
>gi|30425510 zinc finger and BTB domain containing 8 opposite strand
[Homo sapiens]
Length = 179
Score = 366 bits (940), Expect = e-102
Identities = 179/179 (100%), Positives = 179/179 (100%)
Query: 1 MKGGSRVSNPAVMAQEEEDVRDYNLTEEQKAIKAKYPPVNRKYEYLDHTADVQLHAWGDT 60
MKGGSRVSNPAVMAQEEEDVRDYNLTEEQKAIKAKYPPVNRKYEYLDHTADVQLHAWGDT
Sbjct: 1 MKGGSRVSNPAVMAQEEEDVRDYNLTEEQKAIKAKYPPVNRKYEYLDHTADVQLHAWGDT 60
Query: 61 LEEAFEQCAMAMFGYMTDTGTVEPLQTVEVETQGDDLQSLLFHFLDEWLYKFSADEFFIP 120
LEEAFEQCAMAMFGYMTDTGTVEPLQTVEVETQGDDLQSLLFHFLDEWLYKFSADEFFIP
Sbjct: 61 LEEAFEQCAMAMFGYMTDTGTVEPLQTVEVETQGDDLQSLLFHFLDEWLYKFSADEFFIP 120
Query: 121 REVKVLSIDQRNFKLRSIGWGEEFSLSKHPQGTEVKAITYSAMQVYNEENPEVFVIIDI 179
REVKVLSIDQRNFKLRSIGWGEEFSLSKHPQGTEVKAITYSAMQVYNEENPEVFVIIDI
Sbjct: 121 REVKVLSIDQRNFKLRSIGWGEEFSLSKHPQGTEVKAITYSAMQVYNEENPEVFVIIDI 179
>gi|169164528 PREDICTED: similar to zinc finger and BTB domain
containing 8 opposite strand [Homo sapiens]
Length = 136
Score = 223 bits (568), Expect = 7e-59
Identities = 110/127 (86%), Positives = 115/127 (90%)
Query: 13 MAQEEEDVRDYNLTEEQKAIKAKYPPVNRKYEYLDHTADVQLHAWGDTLEEAFEQCAMAM 72
MAQ EEDVRDYNLTEEQKAIKAKYPPVNRKYEYLDHTADVQLHAWGDTLEEAFEQCAMAM
Sbjct: 1 MAQAEEDVRDYNLTEEQKAIKAKYPPVNRKYEYLDHTADVQLHAWGDTLEEAFEQCAMAM 60
Query: 73 FGYMTDTGTVEPLQTVEVETQGDDLQSLLFHFLDEWLYKFSADEFFIPREVKVLSIDQRN 132
FGYMTDTGTVEPL TVEVETQG+DLQ+LLFHFLDEWLYKFSADEFFIPR + + I Q +
Sbjct: 61 FGYMTDTGTVEPLPTVEVETQGNDLQTLLFHFLDEWLYKFSADEFFIPRVGRRVFIVQAS 120
Query: 133 FKLRSIG 139
RS G
Sbjct: 121 SGNRSQG 127
>gi|113414298 PREDICTED: similar to zinc finger and BTB domain
containing 8 opposite strand [Homo sapiens]
Length = 136
Score = 223 bits (568), Expect = 7e-59
Identities = 110/127 (86%), Positives = 115/127 (90%)
Query: 13 MAQEEEDVRDYNLTEEQKAIKAKYPPVNRKYEYLDHTADVQLHAWGDTLEEAFEQCAMAM 72
MAQ EEDVRDYNLTEEQKAIKAKYPPVNRKYEYLDHTADVQLHAWGDTLEEAFEQCAMAM
Sbjct: 1 MAQAEEDVRDYNLTEEQKAIKAKYPPVNRKYEYLDHTADVQLHAWGDTLEEAFEQCAMAM 60
Query: 73 FGYMTDTGTVEPLQTVEVETQGDDLQSLLFHFLDEWLYKFSADEFFIPREVKVLSIDQRN 132
FGYMTDTGTVEPL TVEVETQG+DLQ+LLFHFLDEWLYKFSADEFFIPR + + I Q +
Sbjct: 61 FGYMTDTGTVEPLPTVEVETQGNDLQTLLFHFLDEWLYKFSADEFFIPRVGRRVFIVQAS 120
Query: 133 FKLRSIG 139
RS G
Sbjct: 121 SGNRSQG 127
>gi|113413492 PREDICTED: similar to zinc finger and BTB domain
containing 8 opposite strand [Homo sapiens]
Length = 136
Score = 223 bits (568), Expect = 7e-59
Identities = 110/127 (86%), Positives = 115/127 (90%)
Query: 13 MAQEEEDVRDYNLTEEQKAIKAKYPPVNRKYEYLDHTADVQLHAWGDTLEEAFEQCAMAM 72
MAQ EEDVRDYNLTEEQKAIKAKYPPVNRKYEYLDHTADVQLHAWGDTLEEAFEQCAMAM
Sbjct: 1 MAQAEEDVRDYNLTEEQKAIKAKYPPVNRKYEYLDHTADVQLHAWGDTLEEAFEQCAMAM 60
Query: 73 FGYMTDTGTVEPLQTVEVETQGDDLQSLLFHFLDEWLYKFSADEFFIPREVKVLSIDQRN 132
FGYMTDTGTVEPL TVEVETQG+DLQ+LLFHFLDEWLYKFSADEFFIPR + + I Q +
Sbjct: 61 FGYMTDTGTVEPLPTVEVETQGNDLQTLLFHFLDEWLYKFSADEFFIPRVGRRVFIVQAS 120
Query: 133 FKLRSIG 139
RS G
Sbjct: 121 SGNRSQG 127
>gi|239748466 PREDICTED: similar to zinc finger and BTB domain
containing 8 opposite strand [Homo sapiens]
Length = 202
Score = 198 bits (504), Expect = 2e-51
Identities = 96/118 (81%), Positives = 105/118 (88%), Gaps = 2/118 (1%)
Query: 7 VSNPAVMAQEEEDVRDYNLTEEQKAIKAKYPPVNRKYEYLDHTADVQLHAWGDTLEEAFE 66
+S+ AVMAQ+E DVRDYNLTEEQKAIKA YPPVNR YEYLDHTADVQLH WGDTLEEAFE
Sbjct: 62 LSSKAVMAQKEGDVRDYNLTEEQKAIKANYPPVNRNYEYLDHTADVQLHTWGDTLEEAFE 121
Query: 67 QCAMAMFGYMTDTGTVEPLQTVEVETQGDDLQSLLFHFLDEWLYKFSADEFFIPREVK 124
QCAMA+FGYM DT TVEPLQT+EVETQ ++ + LFHFLDEWLYK +ADEFFIP EVK
Sbjct: 122 QCAMAIFGYMIDTRTVEPLQTIEVETQ--EVSTFLFHFLDEWLYKSNADEFFIPWEVK 177
>gi|110238585 hypothetical protein LOC84734 [Homo sapiens]
Length = 163
Score = 31.6 bits (70), Expect = 0.38
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 11 AVMAQEEEDVRDYNLTEEQKAIKAKYPPVNRKYEYLDHTADVQLHAW 57
AV ++EED +L + KA+ AK R+ YL+ TA VQ AW
Sbjct: 10 AVGEEDEEDEEGESL-DSVKALTAKLQLQTRRPSYLEWTAQVQSQAW 55
>gi|189409125 transcription factor Dp family, member 3 [Homo
sapiens]
Length = 405
Score = 30.0 bits (66), Expect = 1.1
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 4 GSRVSNPAVMAQEEEDVRDYNLTEEQK 30
GSRV PAV +EEED D +L+E +
Sbjct: 377 GSRVETPAVEEEEEEDNNDDDLSENDE 403
>gi|4559408 colony stimulating factor 2 receptor, beta precursor
[Homo sapiens]
Length = 897
Score = 28.5 bits (62), Expect = 3.2
Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 24 NLTEEQKAIKAKYPPVNRKYEYLDHTADVQLH----AWGDTLEEAFE 66
N+T++ + ++ + +YE++DHT ++Q W D+ E +
Sbjct: 346 NVTKDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQ 392
>gi|63252910 IQ motif and WD repeats 1 isoform b [Homo sapiens]
Length = 860
Score = 27.3 bits (59), Expect = 7.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 80 GTVEPLQTVEVETQGDDLQSLLFHFLDEW 108
GT EP+ ++ T+G ++ +F DEW
Sbjct: 471 GTGEPVLSLHYSTEGTTTSTIKLNFTDEW 499
>gi|63252908 IQ motif and WD repeats 1 isoform a [Homo sapiens]
Length = 880
Score = 27.3 bits (59), Expect = 7.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 80 GTVEPLQTVEVETQGDDLQSLLFHFLDEW 108
GT EP+ ++ T+G ++ +F DEW
Sbjct: 491 GTGEPVLSLHYSTEGTTTSTIKLNFTDEW 519
>gi|156564238 hypothetical protein LOC129293 [Homo sapiens]
Length = 456
Score = 27.3 bits (59), Expect = 7.2
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 59 DTLEEAFEQCAMAMFGY-MTDTGTVEPLQTVEVETQGDDLQSLL 101
D +EAF Q ++ F +TD T+ L + ++ QG++LQ +L
Sbjct: 72 DNSKEAFLQSSIVYFELDLTDPYTISALTSCQMLPQGENLQDVL 115
>gi|65508004 Wilms tumor 1 isoform D [Homo sapiens]
Length = 517
Score = 26.9 bits (58), Expect = 9.4
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 20 VRDYNLTEEQKAIKAKYPPVNRKYEYLDHTADVQLHAWGDTLEEAFE 66
VR + T E++ YP N++Y L H +Q+H+ T E+ ++
Sbjct: 379 VRSASETSEKRPFMCAYPGCNKRYFKLSH---LQMHSRKHTGEKPYQ 422
>gi|65507908 Wilms tumor 1 isoform C [Homo sapiens]
Length = 500
Score = 26.9 bits (58), Expect = 9.4
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 20 VRDYNLTEEQKAIKAKYPPVNRKYEYLDHTADVQLHAWGDTLEEAFE 66
VR + T E++ YP N++Y L H +Q+H+ T E+ ++
Sbjct: 362 VRSASETSEKRPFMCAYPGCNKRYFKLSH---LQMHSRKHTGEKPYQ 405
>gi|65507817 Wilms tumor 1 isoform B [Homo sapiens]
Length = 514
Score = 26.9 bits (58), Expect = 9.4
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 20 VRDYNLTEEQKAIKAKYPPVNRKYEYLDHTADVQLHAWGDTLEEAFE 66
VR + T E++ YP N++Y L H +Q+H+ T E+ ++
Sbjct: 379 VRSASETSEKRPFMCAYPGCNKRYFKLSH---LQMHSRKHTGEKPYQ 422
>gi|65507714 Wilms tumor 1 isoform A [Homo sapiens]
Length = 497
Score = 26.9 bits (58), Expect = 9.4
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 20 VRDYNLTEEQKAIKAKYPPVNRKYEYLDHTADVQLHAWGDTLEEAFE 66
VR + T E++ YP N++Y L H +Q+H+ T E+ ++
Sbjct: 362 VRSASETSEKRPFMCAYPGCNKRYFKLSH---LQMHSRKHTGEKPYQ 405
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,643,805
Number of Sequences: 37866
Number of extensions: 262822
Number of successful extensions: 605
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 594
Number of HSP's gapped (non-prelim): 15
length of query: 179
length of database: 18,247,518
effective HSP length: 96
effective length of query: 83
effective length of database: 14,612,382
effective search space: 1212827706
effective search space used: 1212827706
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.