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Search of human proteins with 122937384
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|122937384 transmembrane protein 218 [Homo sapiens]
(115 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|122937384 transmembrane protein 218 [Homo sapiens] 223 3e-59
gi|40316941 androgen-induced 1 [Homo sapiens] 30 0.31
gi|7705636 golgi transport 1 homolog B [Homo sapiens] 30 0.41
gi|196123591 cytochrome b [Homo sapiens neanderthalensis] 27 2.7
gi|239757849 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|239752365 PREDICTED: hypothetical protein XP_002348214 [Homo ... 27 2.7
gi|239746879 PREDICTED: hypothetical protein XP_002343873 [Homo ... 27 2.7
gi|10947061 adenylate cyclase 6 isoform b [Homo sapiens] 27 2.7
gi|148612887 choline transporter-like protein 4 [Homo sapiens] 27 2.7
gi|251831119 cytochrome b [Homo sapiens] 27 4.5
gi|40254478 excitatory amino acid transporter 2 [Homo sapiens] 27 4.5
gi|4502997 carboxypeptidase A1 precursor [Homo sapiens] 26 5.9
gi|117553619 solute carrier family 39, member 7 [Homo sapiens] 26 5.9
gi|117553608 solute carrier family 39, member 7 [Homo sapiens] 26 5.9
gi|57164951 non imprinted in Prader-Willi/Angelman syndrome 2 is... 26 5.9
gi|57013272 non imprinted in Prader-Willi/Angelman syndrome 2 is... 26 5.9
gi|57164953 non imprinted in Prader-Willi/Angelman syndrome 2 is... 26 5.9
gi|57013274 non imprinted in Prader-Willi/Angelman syndrome 2 is... 26 5.9
gi|10181096 adenylate cyclase 6 isoform a [Homo sapiens] 26 7.7
gi|52353342 olfactory receptor, family 6, subfamily K, member 6 ... 26 7.7
>gi|122937384 transmembrane protein 218 [Homo sapiens]
Length = 115
Score = 223 bits (568), Expect = 3e-59
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MAGTVLGVGAGVFILALLWVAVLLLCVLLSRASGAARFSVIFLFFGAVIITSVLLLFPRA 60
MAGTVLGVGAGVFILALLWVAVLLLCVLLSRASGAARFSVIFLFFGAVIITSVLLLFPRA
Sbjct: 1 MAGTVLGVGAGVFILALLWVAVLLLCVLLSRASGAARFSVIFLFFGAVIITSVLLLFPRA 60
Query: 61 GEFPAPEVEVKIVDDFFIGRYVLLAFLSAIFLGGLFLVLIHYVLEPIYAKPLHSY 115
GEFPAPEVEVKIVDDFFIGRYVLLAFLSAIFLGGLFLVLIHYVLEPIYAKPLHSY
Sbjct: 61 GEFPAPEVEVKIVDDFFIGRYVLLAFLSAIFLGGLFLVLIHYVLEPIYAKPLHSY 115
>gi|40316941 androgen-induced 1 [Homo sapiens]
Length = 238
Score = 30.4 bits (67), Expect = 0.31
Identities = 19/73 (26%), Positives = 34/73 (46%)
Query: 43 LFFGAVIITSVLLLFPRAGEFPAPEVEVKIVDDFFIGRYVLLAFLSAIFLGGLFLVLIHY 102
+FFG ++T + L R E ++K + +LAF +F+ +F ++ Y
Sbjct: 52 VFFGICVLTDLSSLLTRGSGNQEQERQLKKLISLRDWMLAVLAFPVGVFVVAVFWIIYAY 111
Query: 103 VLEPIYAKPLHSY 115
E IY K L ++
Sbjct: 112 DREMIYPKLLDNF 124
>gi|7705636 golgi transport 1 homolog B [Homo sapiens]
Length = 138
Score = 30.0 bits (66), Expect = 0.41
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 34 GAARFSVIFLFFGAVIITSVLLLFPRAGEFPAP---EVEVKIVDDFFIGRYVLLAFLSAI 90
G F V FLFFG ++ LL F A + ++ FF ++ + A +
Sbjct: 13 GLTGFGVFFLFFGMILFFDKALLAIGNVLFVAGLAFVIGLERTFRFFFQKHKMKA--TGF 70
Query: 91 FLGGLFLVLIHYVL 104
FLGG+F+VLI + L
Sbjct: 71 FLGGVFVVLIGWPL 84
>gi|196123591 cytochrome b [Homo sapiens neanderthalensis]
Length = 378
Score = 27.3 bits (59), Expect = 2.7
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 14/108 (12%)
Query: 6 LGVGAGVFILALLWVAVLLLCVLLSRASGAARFSVIFL------FFGAVIITSVLLLFPR 59
L +G G++ + L+ + ++L A+ A F L F+GA +IT++L P
Sbjct: 96 LHIGRGLYYGSFLYSKTWNIGIILLLATMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 155
Query: 60 AGE------FPAPEVEVKIVDDFFIGRYVLLAFLSAIFLGGLFLVLIH 101
G + V+ + FF ++L ++A L L L+ +H
Sbjct: 156 IGTDLVQWIWGGYSVDSPTLTRFFTFHFILPFIIAA--LAALHLLFLH 201
>gi|239757849 PREDICTED: hypothetical protein [Homo sapiens]
Length = 183
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 83 LLAFLSAIFLGGLFLVLIHYVLEPIYAKPLH 113
LL FLSA+FL L L+ +++VLE +A H
Sbjct: 45 LLLFLSALFLPQLRLLRLYWVLEFSFAGSPH 75
>gi|239752365 PREDICTED: hypothetical protein XP_002348214 [Homo
sapiens]
Length = 183
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 83 LLAFLSAIFLGGLFLVLIHYVLEPIYAKPLH 113
LL FLSA+FL L L+ +++VLE +A H
Sbjct: 45 LLLFLSALFLPQLRLLRLYWVLEFSFAGSPH 75
>gi|239746879 PREDICTED: hypothetical protein XP_002343873 [Homo
sapiens]
Length = 183
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 83 LLAFLSAIFLGGLFLVLIHYVLEPIYAKPLH 113
LL FLSA+FL L L+ +++VLE +A H
Sbjct: 45 LLLFLSALFLPQLRLLRLYWVLEFSFAGSPH 75
>gi|10947061 adenylate cyclase 6 isoform b [Homo sapiens]
Length = 1115
Score = 27.3 bits (59), Expect = 2.7
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 22/96 (22%)
Query: 5 VLGVGAGVFILALLWVAVLLLCVLLSRAS----GAARFSVIFL----FFGAVIITSVLLL 56
+LG+ A +F+L L+ V L+C + S S R S + AV I SVLL+
Sbjct: 697 MLGIYASIFLLLLITV---LICAVYSCGSLFPKALQRLSRSIVRSRAHSTAVGIFSVLLV 753
Query: 57 FPRAGEFPAPEVEVKIVDDFFIGRYVLLAFLSAIFL 92
F A I + +FIG +L S++FL
Sbjct: 754 FTSA-----------IANMYFIGNMLLSLLASSVFL 778
Score = 25.8 bits (55), Expect = 7.7
Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 36/105 (34%)
Query: 39 SVIFLFFGAVIITSVLLLFPRAGEFPAPE------------VEVKIV--------DDFFI 78
S+ L V++T+VLL F A P P V + +V D ++
Sbjct: 151 SLTLLMAVLVLLTAVLLAFHAAPARPQPAYVALLACAAALFVGLMVVCNRHSFRQDSMWV 210
Query: 79 GRYVLLAFLSAIFLGG----------------LFLVLIHYVLEPI 107
YV+L L+A+ +GG +F V I Y L PI
Sbjct: 211 VSYVVLGILAAVQVGGALAADPRSPSAGLWCPVFFVYIAYTLLPI 255
>gi|148612887 choline transporter-like protein 4 [Homo sapiens]
Length = 710
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 65 APEVEVKIVDDFFIGRY-VLLAFLSAIFLGGLFLVLIHYVLEPI 107
A ++ VKI +DF Y +L+A A+ L LF++L+ V P+
Sbjct: 214 ARDISVKIFEDFAQSWYWILVALGVALVLSLLFILLLRLVAGPL 257
>gi|251831119 cytochrome b [Homo sapiens]
Length = 380
Score = 26.6 bits (57), Expect = 4.5
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 14/108 (12%)
Query: 6 LGVGAGVFILALLWVAVLLLCVLLSRASGAARFSVIFL------FFGAVIITSVLLLFPR 59
L +G G++ + L+ + ++L A+ A F L F+GA +IT++L P
Sbjct: 96 LHIGRGLYYGSFLYSETWNIGIILLLATMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 155
Query: 60 AGE------FPAPEVEVKIVDDFFIGRYVLLAFLSAIFLGGLFLVLIH 101
G + V+ + FF ++L ++A L L L+ +H
Sbjct: 156 IGTDLVQWIWGGYSVDSPTLTRFFTFHFILPFIIAA--LATLHLLFLH 201
>gi|40254478 excitatory amino acid transporter 2 [Homo sapiens]
Length = 574
Score = 26.6 bits (57), Expect = 4.5
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 78 IGRYVLLAFLSAIFLGGLFLVLIHYVL 104
+G Y++ + I GG+FL LI++V+
Sbjct: 313 LGMYMVTVIIGLIIHGGIFLPLIYFVV 339
>gi|4502997 carboxypeptidase A1 precursor [Homo sapiens]
Length = 419
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 61 GEFPAPEVEVKIVDDFFIGRYVLLAFLSAIFLGGLFLVLIHYVLEPI 107
G+F EVEVK + DF + AF+S L + Y EP+
Sbjct: 277 GKFANSEVEVKSIVDFVKDHGNIKAFISIHSYSQLLMYPYGYKTEPV 323
>gi|117553619 solute carrier family 39, member 7 [Homo sapiens]
Length = 469
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 82 VLLAFLSAIFLGGLFLVLIHYVLEP 106
+LL+F S LG FL LI + LEP
Sbjct: 171 ILLSFASGGLLGDAFLHLIPHALEP 195
>gi|117553608 solute carrier family 39, member 7 [Homo sapiens]
Length = 469
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 82 VLLAFLSAIFLGGLFLVLIHYVLEP 106
+LL+F S LG FL LI + LEP
Sbjct: 171 ILLSFASGGLLGDAFLHLIPHALEP 195
>gi|57164951 non imprinted in Prader-Willi/Angelman syndrome 2
isoform b [Homo sapiens]
Length = 341
Score = 26.2 bits (56), Expect = 5.9
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 15/100 (15%)
Query: 6 LGVGAGVFILALLWVAVLLLCVLLS-------RASGAARFSVI----FLFFGAVIITSVL 54
L G V L W+ +L L V +S RA S++ ++FF ++T
Sbjct: 187 LFAGKPVLRHPLAWILLLSLIVCVSTQINYLNRALDIFNTSIVTPIYYVFFTTSVLTCSA 246
Query: 55 LLFPRAGEFPAPEVEVKIVDDFF---IGRYVLLAFLSAIF 91
+LF + P +V + + FF +G ++L AF F
Sbjct: 247 ILFKEWQDMPVDDV-IGTLSGFFTIIVGIFLLHAFKDVSF 285
>gi|57013272 non imprinted in Prader-Willi/Angelman syndrome 2
isoform a [Homo sapiens]
Length = 360
Score = 26.2 bits (56), Expect = 5.9
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 15/100 (15%)
Query: 6 LGVGAGVFILALLWVAVLLLCVLLS-------RASGAARFSVI----FLFFGAVIITSVL 54
L G V L W+ +L L V +S RA S++ ++FF ++T
Sbjct: 206 LFAGKPVLRHPLAWILLLSLIVCVSTQINYLNRALDIFNTSIVTPIYYVFFTTSVLTCSA 265
Query: 55 LLFPRAGEFPAPEVEVKIVDDFF---IGRYVLLAFLSAIF 91
+LF + P +V + + FF +G ++L AF F
Sbjct: 266 ILFKEWQDMPVDDV-IGTLSGFFTIIVGIFLLHAFKDVSF 304
>gi|57164953 non imprinted in Prader-Willi/Angelman syndrome 2
isoform a [Homo sapiens]
Length = 360
Score = 26.2 bits (56), Expect = 5.9
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 15/100 (15%)
Query: 6 LGVGAGVFILALLWVAVLLLCVLLS-------RASGAARFSVI----FLFFGAVIITSVL 54
L G V L W+ +L L V +S RA S++ ++FF ++T
Sbjct: 206 LFAGKPVLRHPLAWILLLSLIVCVSTQINYLNRALDIFNTSIVTPIYYVFFTTSVLTCSA 265
Query: 55 LLFPRAGEFPAPEVEVKIVDDFF---IGRYVLLAFLSAIF 91
+LF + P +V + + FF +G ++L AF F
Sbjct: 266 ILFKEWQDMPVDDV-IGTLSGFFTIIVGIFLLHAFKDVSF 304
>gi|57013274 non imprinted in Prader-Willi/Angelman syndrome 2
isoform a [Homo sapiens]
Length = 360
Score = 26.2 bits (56), Expect = 5.9
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 15/100 (15%)
Query: 6 LGVGAGVFILALLWVAVLLLCVLLS-------RASGAARFSVI----FLFFGAVIITSVL 54
L G V L W+ +L L V +S RA S++ ++FF ++T
Sbjct: 206 LFAGKPVLRHPLAWILLLSLIVCVSTQINYLNRALDIFNTSIVTPIYYVFFTTSVLTCSA 265
Query: 55 LLFPRAGEFPAPEVEVKIVDDFF---IGRYVLLAFLSAIF 91
+LF + P +V + + FF +G ++L AF F
Sbjct: 266 ILFKEWQDMPVDDV-IGTLSGFFTIIVGIFLLHAFKDVSF 304
>gi|10181096 adenylate cyclase 6 isoform a [Homo sapiens]
Length = 1168
Score = 25.8 bits (55), Expect = 7.7
Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 36/105 (34%)
Query: 39 SVIFLFFGAVIITSVLLLFPRAGEFPAPE------------VEVKIV--------DDFFI 78
S+ L V++T+VLL F A P P V + +V D ++
Sbjct: 151 SLTLLMAVLVLLTAVLLAFHAAPARPQPAYVALLACAAALFVGLMVVCNRHSFRQDSMWV 210
Query: 79 GRYVLLAFLSAIFLGG----------------LFLVLIHYVLEPI 107
YV+L L+A+ +GG +F V I Y L PI
Sbjct: 211 VSYVVLGILAAVQVGGALAADPRSPSAGLWCPVFFVYIAYTLLPI 255
>gi|52353342 olfactory receptor, family 6, subfamily K, member 6
[Homo sapiens]
Length = 343
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
Query: 10 AGVFILALLWVAVLLLCVLLSRASG--------AARFSVIFLFFGAVII 50
A ++AL ++ ++++ + + A G AA +V LFFG+V +
Sbjct: 236 ASFLVIALSYIRIIIVILGMHSAEGHHKAFSTCAAHLAVFLLFFGSVAV 284
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.336 0.152 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,695,078
Number of Sequences: 37866
Number of extensions: 129344
Number of successful extensions: 697
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 679
Number of HSP's gapped (non-prelim): 30
length of query: 115
length of database: 18,247,518
effective HSP length: 85
effective length of query: 30
effective length of database: 15,028,908
effective search space: 450867240
effective search space used: 450867240
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.