Search of human proteins with 12232457

Search of human proteins with 12232457

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|12232457 defects in morphology 1 homolog [Homo sapiens]
         (373 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|12232457 defects in morphology 1 homolog [Homo sapiens]            747   0.0  
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa...    32   1.2  
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa...    31   1.6  
gi|32481206 lactase-phlorizin hydrolase preproprotein [Homo sapi...    30   2.7  
gi|56549696 E1A binding protein p400 [Homo sapiens]                    30   3.5  
gi|21362052 carbohydrate (N-acetylglucosamine 6-O) sulfotransfer...    30   4.6  
gi|34452173 integrin alpha X precursor [Homo sapiens]                  29   6.0  
gi|15559211 RE1-silencing transcription factor [Homo sapiens]          29   7.8  

>gi|12232457 defects in morphology 1 homolog [Homo sapiens]
          Length = 373

 Score =  747 bits (1928), Expect = 0.0
 Identities = 373/373 (100%), Positives = 373/373 (100%)

Query: 1   MAETREEETVSAEASGFSDLSDSEFLEFLDLEDAQESKALVNMPGPSSESLGKDDKPISL 60
           MAETREEETVSAEASGFSDLSDSEFLEFLDLEDAQESKALVNMPGPSSESLGKDDKPISL
Sbjct: 1   MAETREEETVSAEASGFSDLSDSEFLEFLDLEDAQESKALVNMPGPSSESLGKDDKPISL 60

Query: 61  QNWKRGLDILSPMERFHLKYLYVTDLATQNWCELQTAYGKELPGFLAPEKAAVLDTGASI 120
           QNWKRGLDILSPMERFHLKYLYVTDLATQNWCELQTAYGKELPGFLAPEKAAVLDTGASI
Sbjct: 61  QNWKRGLDILSPMERFHLKYLYVTDLATQNWCELQTAYGKELPGFLAPEKAAVLDTGASI 120

Query: 121 HLARELELHDLVTVPVTTKEDAWAIKFLNILLLIPTLQSEGHIREFPVFGEGEGVLLVGV 180
           HLARELELHDLVTVPVTTKEDAWAIKFLNILLLIPTLQSEGHIREFPVFGEGEGVLLVGV
Sbjct: 121 HLARELELHDLVTVPVTTKEDAWAIKFLNILLLIPTLQSEGHIREFPVFGEGEGVLLVGV 180

Query: 181 IDELHYTAKGELELAELKTRRRPMLPLEAQKKKDCFQVSLYKYIFDAMVQGKVTPASLIH 240
           IDELHYTAKGELELAELKTRRRPMLPLEAQKKKDCFQVSLYKYIFDAMVQGKVTPASLIH
Sbjct: 181 IDELHYTAKGELELAELKTRRRPMLPLEAQKKKDCFQVSLYKYIFDAMVQGKVTPASLIH 240

Query: 241 HTKLCLEKPLGPSVLRHAQQGGFSVKSLGDLMELVFLSLTLSDLPVIDILKIEYIHQETA 300
           HTKLCLEKPLGPSVLRHAQQGGFSVKSLGDLMELVFLSLTLSDLPVIDILKIEYIHQETA
Sbjct: 241 HTKLCLEKPLGPSVLRHAQQGGFSVKSLGDLMELVFLSLTLSDLPVIDILKIEYIHQETA 300

Query: 301 TVLGTEIVAFKEKEVRAKVQHYMAYWMGHREPQGVDVEEAWKCRTCTYADICEWRKGSGV 360
           TVLGTEIVAFKEKEVRAKVQHYMAYWMGHREPQGVDVEEAWKCRTCTYADICEWRKGSGV
Sbjct: 301 TVLGTEIVAFKEKEVRAKVQHYMAYWMGHREPQGVDVEEAWKCRTCTYADICEWRKGSGV 360

Query: 361 LSSTLAPQVKKAK 373
           LSSTLAPQVKKAK
Sbjct: 361 LSSTLAPQVKKAK 373


>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
            sapiens]
          Length = 2997

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 17   FSDLSDSEFLEFLDLEDAQESKALVNMPGPSSESLG-------KDDKPISLQNWKRGLDI 69
            +S + + E +EF DLE   E K       P  +S G       + +K + +  W R  DI
Sbjct: 1565 YSAVKEDELMEFSDLESDSEEKPCAKPRRPQDKSQGYARSECFRVEKNLLVYGWGRWTDI 1624

Query: 70   LS 71
            LS
Sbjct: 1625 LS 1626


>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
            sapiens]
          Length = 2715

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 13/28 (46%), Positives = 20/28 (71%)

Query: 31   LEDAQESKALVNMPGPSSESLGKDDKPI 58
            LE A+E++ +V+ P PSSE  G +D P+
Sbjct: 1795 LEAAEENQTIVHSPAPSSEPPGGEDPPL 1822


>gi|32481206 lactase-phlorizin hydrolase preproprotein [Homo
           sapiens]
          Length = 1927

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 20/104 (19%)

Query: 204 MLPLEAQKKKDCFQVSLYKYIFDAMVQGKVTPASLIHHTKLCLEKPLGPSVLRH------ 257
           +LP  + +  D   V  Y+ +  A+   ++ P  ++HH      + L  S LR       
Sbjct: 96  LLPAGSTQNPDEKTVQCYRRLLKALKTARLQPMVILHH------QTLPASTLRRTEAFAD 149

Query: 258 --AQQGGFSVKSLGDLMELVFLSLTLSDLPVIDILKIEYIHQET 299
             A    F+  S GDL+ + F   T SDL   +++K E  HQE+
Sbjct: 150 LFADYATFAFHSFGDLVGIWF---TFSDLE--EVIK-ELPHQES 187


>gi|56549696 E1A binding protein p400 [Homo sapiens]
          Length = 3122

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 9/63 (14%)

Query: 26   LEFLDLEDAQESKALVNMPGPSSESLGKD-------DKPISLQNWKRGLDILSPMERFHL 78
            +E+L+ EDAQ+S A   + GP +++L  D       ++P  L+     ++ L+P+E++ L
Sbjct: 2073 IEYLE-EDAQKS-AQEGVLGPHTDALSSDSENMPCDEEPSQLEELADFMEQLTPIEKYAL 2130

Query: 79   KYL 81
             YL
Sbjct: 2131 NYL 2133


>gi|21362052 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase
           5 [Homo sapiens]
          Length = 411

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 40  LVNMPGPSSESLGKDD-KPISLQNWKRGLDILSPMERFHLKYLYVTDLATQNWCEL 94
           +++ PGPSS + G+D    + L +W+ G   L  +   H    Y+ + A   W  L
Sbjct: 47  IISRPGPSSPAGGEDRVHVLVLSSWRSGSSFLGQLFSQHPDVFYLMEPAWHVWTTL 102


>gi|34452173 integrin alpha X precursor [Homo sapiens]
          Length = 1163

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 12/43 (27%), Positives = 25/43 (58%)

Query: 21  SDSEFLEFLDLEDAQESKALVNMPGPSSESLGKDDKPISLQNW 63
           S  +F ++L+  +++E ++ V M      +LG+ D P+S+  W
Sbjct: 930 SHEQFTKYLNFSESEEKESHVAMHRYQVNNLGQRDLPVSINFW 972


>gi|15559211 RE1-silencing transcription factor [Homo sapiens]
          Length = 1097

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 318 KVQHYMAYWMGHREPQGVDVEEAWKCRTCTYADICE--WRK 356
           +  HY A+   H   +  D E  +KC  CTY  + E  WRK
Sbjct: 227 RYDHYTAHLKHHT--RAGDNERVYKCIICTYTTVSEYHWRK 265


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,252,039
Number of Sequences: 37866
Number of extensions: 634471
Number of successful extensions: 1437
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1433
Number of HSP's gapped (non-prelim): 9
length of query: 373
length of database: 18,247,518
effective HSP length: 104
effective length of query: 269
effective length of database: 14,309,454
effective search space: 3849243126
effective search space used: 3849243126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.