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Search of human proteins with 28557709
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28557709 phosphoribosyl pyrophosphate synthetase 1-like 1
[Homo sapiens]
(318 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28557709 phosphoribosyl pyrophosphate synthetase 1-like 1 [Ho... 628 e-180
gi|4506127 phosphoribosyl pyrophosphate synthetase 1 [Homo sapiens] 593 e-170
gi|4506129 phosphoribosyl pyrophosphate synthetase 2 isoform 2 [... 577 e-165
gi|84875539 phosphoribosyl pyrophosphate synthetase 2 isoform 1 ... 572 e-163
gi|4506133 phosphoribosyl pyrophosphate synthetase-associated pr... 280 2e-75
gi|194018537 phosphoribosyl pyrophosphate synthetase-associated ... 263 2e-70
gi|169171357 PREDICTED: similar to hCG1804306 [Homo sapiens] 107 2e-23
gi|169172220 PREDICTED: similar to hCG1804306 [Homo sapiens] 107 2e-23
gi|169170962 PREDICTED: similar to hCG1804306 [Homo sapiens] 107 2e-23
gi|239508768 PREDICTED: similar to hCG1804306 [Homo sapiens] 107 2e-23
gi|116805342 human immunodeficiency virus type I enhancer bindin... 33 0.44
>gi|28557709 phosphoribosyl pyrophosphate synthetase 1-like 1 [Homo
sapiens]
Length = 318
Score = 628 bits (1619), Expect = e-180
Identities = 318/318 (100%), Positives = 318/318 (100%)
Query: 1 MPNIKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIDESVRGEDVYIVQSGC 60
MPNIKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIDESVRGEDVYIVQSGC
Sbjct: 1 MPNIKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIDESVRGEDVYIVQSGC 60
Query: 61 GEINDSLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRSPISAKLVANMLSIAG 120
GEINDSLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRSPISAKLVANMLSIAG
Sbjct: 61 GEINDSLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRSPISAKLVANMLSIAG 120
Query: 121 ADHIITMDLHASQIQGFFDIPVDNLYAEPTVLKWIRENIPEWKNCIIVSPDAGGAKRVTS 180
ADHIITMDLHASQIQGFFDIPVDNLYAEPTVLKWIRENIPEWKNCIIVSPDAGGAKRVTS
Sbjct: 121 ADHIITMDLHASQIQGFFDIPVDNLYAEPTVLKWIRENIPEWKNCIIVSPDAGGAKRVTS 180
Query: 181 IADQLNVDFALIHKERKKANEVDCIVLVGDVNDRVAILVDDMADTCVTICLAADKLLSAG 240
IADQLNVDFALIHKERKKANEVDCIVLVGDVNDRVAILVDDMADTCVTICLAADKLLSAG
Sbjct: 181 IADQLNVDFALIHKERKKANEVDCIVLVGDVNDRVAILVDDMADTCVTICLAADKLLSAG 240
Query: 241 ATRVYAILTHGIFSGPAISRINTACFEAVVVTNTIPQDEKMKHCSKIRVIDISMILAEAI 300
ATRVYAILTHGIFSGPAISRINTACFEAVVVTNTIPQDEKMKHCSKIRVIDISMILAEAI
Sbjct: 241 ATRVYAILTHGIFSGPAISRINTACFEAVVVTNTIPQDEKMKHCSKIRVIDISMILAEAI 300
Query: 301 RRTHNGESVSYLFSHVPL 318
RRTHNGESVSYLFSHVPL
Sbjct: 301 RRTHNGESVSYLFSHVPL 318
>gi|4506127 phosphoribosyl pyrophosphate synthetase 1 [Homo sapiens]
Length = 318
Score = 593 bits (1529), Expect = e-170
Identities = 300/318 (94%), Positives = 309/318 (97%)
Query: 1 MPNIKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIDESVRGEDVYIVQSGC 60
MPNIKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEI ESVRGEDVYIVQSGC
Sbjct: 1 MPNIKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGC 60
Query: 61 GEINDSLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRSPISAKLVANMLSIAG 120
GEIND+LMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSR+PISAKLVANMLS+AG
Sbjct: 61 GEINDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAG 120
Query: 121 ADHIITMDLHASQIQGFFDIPVDNLYAEPTVLKWIRENIPEWKNCIIVSPDAGGAKRVTS 180
ADHIITMDLHASQIQGFFDIPVDNLYAEP VLKWIRENI EW+NC IVSPDAGGAKRVTS
Sbjct: 121 ADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTS 180
Query: 181 IADQLNVDFALIHKERKKANEVDCIVLVGDVNDRVAILVDDMADTCVTICLAADKLLSAG 240
IAD+LNVDFALIHKERKKANEVD +VLVGDV DRVAILVDDMADTC TIC AADKLLSAG
Sbjct: 181 IADRLNVDFALIHKERKKANEVDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAG 240
Query: 241 ATRVYAILTHGIFSGPAISRINTACFEAVVVTNTIPQDEKMKHCSKIRVIDISMILAEAI 300
ATRVYAILTHGIFSGPAISRIN ACFEAVVVTNTIPQ++KMKHCSKI+VIDISMILAEAI
Sbjct: 241 ATRVYAILTHGIFSGPAISRINNACFEAVVVTNTIPQEDKMKHCSKIQVIDISMILAEAI 300
Query: 301 RRTHNGESVSYLFSHVPL 318
RRTHNGESVSYLFSHVPL
Sbjct: 301 RRTHNGESVSYLFSHVPL 318
>gi|4506129 phosphoribosyl pyrophosphate synthetase 2 isoform 2
[Homo sapiens]
Length = 318
Score = 577 bits (1487), Expect = e-165
Identities = 290/318 (91%), Positives = 307/318 (96%)
Query: 1 MPNIKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIDESVRGEDVYIVQSGC 60
MPNI +FSGSSHQDLSQ++ADRLGLELGKVVTKKFSNQET VEI ESVRGEDVYI+QSGC
Sbjct: 1 MPNIVLFSGSSHQDLSQRVADRLGLELGKVVTKKFSNQETSVEIGESVRGEDVYIIQSGC 60
Query: 61 GEINDSLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRSPISAKLVANMLSIAG 120
GEIND+LMELLIMINACKIAS+SRVTAVIPCFPYARQDKKDKSR+PISAKLVANMLS+AG
Sbjct: 61 GEINDNLMELLIMINACKIASSSRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAG 120
Query: 121 ADHIITMDLHASQIQGFFDIPVDNLYAEPTVLKWIRENIPEWKNCIIVSPDAGGAKRVTS 180
ADHIITMDLHASQIQGFFDIPVDNLYAEP VL+WIRENI EWKNCIIVSPDAGGAKRVTS
Sbjct: 121 ADHIITMDLHASQIQGFFDIPVDNLYAEPAVLQWIRENIAEWKNCIIVSPDAGGAKRVTS 180
Query: 181 IADQLNVDFALIHKERKKANEVDCIVLVGDVNDRVAILVDDMADTCVTICLAADKLLSAG 240
IAD+LNV+FALIHKERKKANEVD +VLVGDV DRVAILVDDMADTC TIC AADKLLSAG
Sbjct: 181 IADRLNVEFALIHKERKKANEVDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAG 240
Query: 241 ATRVYAILTHGIFSGPAISRINTACFEAVVVTNTIPQDEKMKHCSKIRVIDISMILAEAI 300
AT+VYAILTHGIFSGPAISRIN A FEAVVVTNTIPQ++KMKHC+KI+VIDISMILAEAI
Sbjct: 241 ATKVYAILTHGIFSGPAISRINNAAFEAVVVTNTIPQEDKMKHCTKIQVIDISMILAEAI 300
Query: 301 RRTHNGESVSYLFSHVPL 318
RRTHNGESVSYLFSHVPL
Sbjct: 301 RRTHNGESVSYLFSHVPL 318
>gi|84875539 phosphoribosyl pyrophosphate synthetase 2 isoform 1
[Homo sapiens]
Length = 321
Score = 572 bits (1473), Expect = e-163
Identities = 290/321 (90%), Positives = 307/321 (95%), Gaps = 3/321 (0%)
Query: 1 MPNIKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIDESVRGEDVYIVQSGC 60
MPNI +FSGSSHQDLSQ++ADRLGLELGKVVTKKFSNQET VEI ESVRGEDVYI+QSGC
Sbjct: 1 MPNIVLFSGSSHQDLSQRVADRLGLELGKVVTKKFSNQETSVEIGESVRGEDVYIIQSGC 60
Query: 61 GEINDSLMELLIMINACKIASASRVTAVIPCFPYARQDKKDK---SRSPISAKLVANMLS 117
GEIND+LMELLIMINACKIAS+SRVTAVIPCFPYARQDKKDK SR+PISAKLVANMLS
Sbjct: 61 GEINDNLMELLIMINACKIASSSRVTAVIPCFPYARQDKKDKVGESRAPISAKLVANMLS 120
Query: 118 IAGADHIITMDLHASQIQGFFDIPVDNLYAEPTVLKWIRENIPEWKNCIIVSPDAGGAKR 177
+AGADHIITMDLHASQIQGFFDIPVDNLYAEP VL+WIRENI EWKNCIIVSPDAGGAKR
Sbjct: 121 VAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLQWIRENIAEWKNCIIVSPDAGGAKR 180
Query: 178 VTSIADQLNVDFALIHKERKKANEVDCIVLVGDVNDRVAILVDDMADTCVTICLAADKLL 237
VTSIAD+LNV+FALIHKERKKANEVD +VLVGDV DRVAILVDDMADTC TIC AADKLL
Sbjct: 181 VTSIADRLNVEFALIHKERKKANEVDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLL 240
Query: 238 SAGATRVYAILTHGIFSGPAISRINTACFEAVVVTNTIPQDEKMKHCSKIRVIDISMILA 297
SAGAT+VYAILTHGIFSGPAISRIN A FEAVVVTNTIPQ++KMKHC+KI+VIDISMILA
Sbjct: 241 SAGATKVYAILTHGIFSGPAISRINNAAFEAVVVTNTIPQEDKMKHCTKIQVIDISMILA 300
Query: 298 EAIRRTHNGESVSYLFSHVPL 318
EAIRRTHNGESVSYLFSHVPL
Sbjct: 301 EAIRRTHNGESVSYLFSHVPL 321
>gi|4506133 phosphoribosyl pyrophosphate synthetase-associated
protein 2 [Homo sapiens]
Length = 369
Score = 280 bits (715), Expect = 2e-75
Identities = 153/342 (44%), Positives = 216/342 (63%), Gaps = 32/342 (9%)
Query: 8 SGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIDESVRGEDVYIVQSGCGEINDSL 67
S SS +LS+KIA+RLG+E+GKV + N+ET V+I ESVRG+DV+I+Q+ ++N ++
Sbjct: 27 SNSSCMELSKKIAERLGVEMGKVQVYQEPNRETRVQIQESVRGKDVFIIQTVSKDVNTTI 86
Query: 68 MELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRSPISAKLVANMLSIAGADHIITM 127
MELLIM+ ACK + A + VIP FPY++Q K K R I +KL+A+M+ AG H+ITM
Sbjct: 87 MELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMRK-RGSIVSKLLASMMCKAGLTHLITM 145
Query: 128 DLHASQIQGFFDIPVDNLYAEPTVLKWIRENIPEWKNCIIVSPDAGGAKRVTSIADQLNV 187
DLH +IQGFF+IPVDNL A P +L++I+E IP+++N +IV+ AKR S A++L +
Sbjct: 146 DLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRL 205
Query: 188 DFALIHKERKKA-------------------------------NEVDCIVLVGDVNDRVA 216
A+IH E + A E I +VGDV R+A
Sbjct: 206 GIAVIHGEAQDAESDLVDGRHSPPMVRSVAAIHPSLEIPMLIPKEKPPITVVGDVGGRIA 265
Query: 217 ILVDDMADTCVTICLAADKLLSAGATRVYAILTHGIFSGPAISRINTACFEAVVVTNTIP 276
I+VDD+ D + AA+ L GA +++ + THG+ S A RI + + VVVTNTIP
Sbjct: 266 IIVDDIIDDVDSFLAAAETLKERGAYKIFVMATHGLLSSDAPRRIEESAIDEVVVTNTIP 325
Query: 277 QDEKMKHCSKIRVIDISMILAEAIRRTHNGESVSYLFSHVPL 318
+ + C KI+ +DISMIL+EAIRR HNGES+SYLF ++ L
Sbjct: 326 HEVQKLQCPKIKTVDISMILSEAIRRIHNGESMSYLFRNIGL 367
>gi|194018537 phosphoribosyl pyrophosphate synthetase-associated
protein 1 [Homo sapiens]
Length = 385
Score = 263 bits (672), Expect = 2e-70
Identities = 149/345 (43%), Positives = 210/345 (60%), Gaps = 34/345 (9%)
Query: 5 KIFSGSSHQ---DLSQKIADRLGLELGKVVTKKFSNQETCVEIDESVRGEDVYIVQSGCG 61
++FS +S +L+++I +RLG ELGK V + +N ET VEI ESVRG+D++I+Q+
Sbjct: 38 RVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDIFIIQTIPR 97
Query: 62 EINDSLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRSPISAKLVANMLSIAGA 121
++N ++MELLIM A K A A + VIP FPY++Q K K R I KL+A+ML+ AG
Sbjct: 98 DVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRK-RGSIVCKLLASMLAKAGL 156
Query: 122 DHIITMDLHASQIQGFFDIPVDNLYAEPTVLKWIRENIPEWKNCIIVSPDAGGAKRVTSI 181
HIITMDLH +IQGFF PVDNL A P +L++I+E IP ++N +IV+ AKR S
Sbjct: 157 THIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSY 216
Query: 182 ADQLNVDFALIHKERK------------------------------KANEVDCIVLVGDV 211
A++L + A+IH E + A E I +VGDV
Sbjct: 217 AERLRLGLAVIHGEAQCTELDMDDGRHSPPMVKNATVHPGLELPLMMAKEKPPITVVGDV 276
Query: 212 NDRVAILVDDMADTCVTICLAADKLLSAGATRVYAILTHGIFSGPAISRINTACFEAVVV 271
R+AI+VDD+ D + AA+ L GA ++Y + THGI S A I + + VVV
Sbjct: 277 GGRIAIIVDDIIDDVESFVAAAEILKERGAYKIYVMATHGILSAEAPRLIEESSVDEVVV 336
Query: 272 TNTIPQDEKMKHCSKIRVIDISMILAEAIRRTHNGESVSYLFSHV 316
TNT+P + + C KI+ +DIS+IL+EAIRR HNGES++YLF ++
Sbjct: 337 TNTVPHEVQKLQCPKIKTVDISLILSEAIRRIHNGESMAYLFRNI 381
>gi|169171357 PREDICTED: similar to hCG1804306 [Homo sapiens]
Length = 271
Score = 107 bits (266), Expect = 2e-23
Identities = 61/140 (43%), Positives = 85/140 (60%), Gaps = 5/140 (3%)
Query: 6 IFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIDESVRGEDVYIVQSGCGEIND 65
+ GSS L+QK+ R GLELGKVVTKKFSNQE + E +R + Y++ +IND
Sbjct: 46 VLLGSSSLGLAQKVVKRWGLELGKVVTKKFSNQEVSIVSGERMRDQAAYVIV----KIND 101
Query: 66 SLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRSPISAKLVANMLSIAGADHII 125
+L L M N CK +S + AV+ C PYA+QD+KDKS +SAKLVAN+ S+AG +
Sbjct: 102 TLTSLA-MTNVCKATWSSGMKAVLSCSPYAQQDQKDKSHPAVSAKLVANVFSVAGRSVGV 160
Query: 126 TMDLHASQIQGFFDIPVDNL 145
I+ + + VD++
Sbjct: 161 DRMFLVGDIKDWVAVLVDDI 180
Score = 40.0 bits (92), Expect = 0.003
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 202 VDCIVLVGDVNDRVAILVDDMADTCVTICLAADKLL 237
VD + LVGD+ D VA+LVDD+ + C T +ADKLL
Sbjct: 160 VDRMFLVGDIKDWVAVLVDDIPNACGTTHDSADKLL 195
>gi|169172220 PREDICTED: similar to hCG1804306 [Homo sapiens]
Length = 271
Score = 107 bits (266), Expect = 2e-23
Identities = 61/140 (43%), Positives = 85/140 (60%), Gaps = 5/140 (3%)
Query: 6 IFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIDESVRGEDVYIVQSGCGEIND 65
+ GSS L+QK+ R GLELGKVVTKKFSNQE + E +R + Y++ +IND
Sbjct: 46 VLLGSSSLGLAQKVVKRWGLELGKVVTKKFSNQEVSIVSGERMRDQAAYVIV----KIND 101
Query: 66 SLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRSPISAKLVANMLSIAGADHII 125
+L L M N CK +S + AV+ C PYA+QD+KDKS +SAKLVAN+ S+AG +
Sbjct: 102 TLTSLA-MTNVCKATWSSGMKAVLSCSPYAQQDQKDKSHPAVSAKLVANVFSVAGRSVGV 160
Query: 126 TMDLHASQIQGFFDIPVDNL 145
I+ + + VD++
Sbjct: 161 DRMFLVGDIKDWVAVLVDDI 180
Score = 40.0 bits (92), Expect = 0.003
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 202 VDCIVLVGDVNDRVAILVDDMADTCVTICLAADKLL 237
VD + LVGD+ D VA+LVDD+ + C T +ADKLL
Sbjct: 160 VDRMFLVGDIKDWVAVLVDDIPNACGTTHDSADKLL 195
>gi|169170962 PREDICTED: similar to hCG1804306 [Homo sapiens]
Length = 271
Score = 107 bits (266), Expect = 2e-23
Identities = 61/140 (43%), Positives = 85/140 (60%), Gaps = 5/140 (3%)
Query: 6 IFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIDESVRGEDVYIVQSGCGEIND 65
+ GSS L+QK+ R GLELGKVVTKKFSNQE + E +R + Y++ +IND
Sbjct: 46 VLLGSSSLGLAQKVVKRWGLELGKVVTKKFSNQEVSIVSGERMRDQAAYVIV----KIND 101
Query: 66 SLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRSPISAKLVANMLSIAGADHII 125
+L L M N CK +S + AV+ C PYA+QD+KDKS +SAKLVAN+ S+AG +
Sbjct: 102 TLTSLA-MTNVCKATWSSGMKAVLSCSPYAQQDQKDKSHPAVSAKLVANVFSVAGRSVGV 160
Query: 126 TMDLHASQIQGFFDIPVDNL 145
I+ + + VD++
Sbjct: 161 DRMFLVGDIKDWVAVLVDDI 180
Score = 40.0 bits (92), Expect = 0.003
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 202 VDCIVLVGDVNDRVAILVDDMADTCVTICLAADKLL 237
VD + LVGD+ D VA+LVDD+ + C T +ADKLL
Sbjct: 160 VDRMFLVGDIKDWVAVLVDDIPNACGTTHDSADKLL 195
>gi|239508768 PREDICTED: similar to hCG1804306 [Homo sapiens]
Length = 271
Score = 107 bits (266), Expect = 2e-23
Identities = 61/140 (43%), Positives = 85/140 (60%), Gaps = 5/140 (3%)
Query: 6 IFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIDESVRGEDVYIVQSGCGEIND 65
+ GSS L+QK+ R GLELGKVVTKKFSNQE + E +R + Y++ +IND
Sbjct: 46 VLLGSSSLGLAQKVVKRWGLELGKVVTKKFSNQEVSIVSGERMRDQAAYVIV----KIND 101
Query: 66 SLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRSPISAKLVANMLSIAGADHII 125
+L L M N CK +S + AV+ C PYA+QD+KDKS +SAKLVAN+ S+AG +
Sbjct: 102 TLTSLA-MTNVCKATWSSGMKAVLSCSPYAQQDQKDKSHPAVSAKLVANVFSVAGRSVGV 160
Query: 126 TMDLHASQIQGFFDIPVDNL 145
I+ + + VD++
Sbjct: 161 DRMFLVGDIKDWVAVLVDDI 180
Score = 40.0 bits (92), Expect = 0.003
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 202 VDCIVLVGDVNDRVAILVDDMADTCVTICLAADKLL 237
VD + LVGD+ D VA+LVDD+ + C T +ADKLL
Sbjct: 160 VDRMFLVGDIKDWVAVLVDDIPNACGTTHDSADKLL 195
>gi|116805342 human immunodeficiency virus type I enhancer binding
protein 1 [Homo sapiens]
Length = 2718
Score = 32.7 bits (73), Expect = 0.44
Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 19/156 (12%)
Query: 143 DNLYAEPTVLKWIRENIPEWKNCII--VSPD---AGGAKRVTSIADQLNVDFALIHKERK 197
+N+++E + + E++P + + +SP + +KR+ S A+ L++ + K +K
Sbjct: 1707 ENVFSEMSQNSSLSESLPITQKISVGRLSPQQESSASSKRMLSPANSLDI---AMEKHQK 1763
Query: 198 KANEVDCIVLVGDVNDRVAIL--VDDMADTCVTICLAADKLLSAGATRVYAILTHGIFSG 255
+A + + V DV A+ V++ + I + + + +L +FS
Sbjct: 1764 RAKDENGAVCATDVRPLEALSSRVNEASKQKKPILV---RQVCTTEPLDGVMLEKDVFSQ 1820
Query: 256 PAISRINTACFEAVVVTNTIPQDEKMKHCSKIRVID 291
P IS EAV +TN +P D CSK VI+
Sbjct: 1821 PEISN------EAVNLTNVLPADNSSTGCSKFVVIE 1850
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,400,939
Number of Sequences: 37866
Number of extensions: 393995
Number of successful extensions: 827
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 804
Number of HSP's gapped (non-prelim): 17
length of query: 318
length of database: 18,247,518
effective HSP length: 102
effective length of query: 216
effective length of database: 14,385,186
effective search space: 3107200176
effective search space used: 3107200176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.