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Search of human proteins with 28373084
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28373084 sialyltransferase 6 isoform h [Homo sapiens]
(139 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28373084 sialyltransferase 6 isoform h [Homo sapiens] 285 6e-78
gi|28373076 sialyltransferase 6 isoform e [Homo sapiens] 273 3e-74
gi|28373072 sialyltransferase 6 isoform c [Homo sapiens] 268 1e-72
gi|28373082 sialyltransferase 6 isoform g [Homo sapiens] 240 2e-64
gi|28373074 sialyltransferase 6 isoform d [Homo sapiens] 228 9e-61
gi|5454060 sialyltransferase 6 isoform j [Homo sapiens] 228 9e-61
gi|28373070 sialyltransferase 6 isoform b [Homo sapiens] 223 5e-59
gi|28373078 sialyltransferase 6 isoform f [Homo sapiens] 197 2e-51
gi|28373068 sialyltransferase 6 isoform a [Homo sapiens] 192 1e-49
gi|28373086 sialyltransferase 6 isoform i [Homo sapiens] 144 3e-35
gi|161019170 mucin 5AC [Homo sapiens] 29 1.4
gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens] 29 1.4
gi|27262638 sperm associated antigen 1 [Homo sapiens] 28 3.1
gi|27262636 sperm associated antigen 1 [Homo sapiens] 28 3.1
gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein ... 27 4.1
gi|4507043 solute carrier family 6 member 4 [Homo sapiens] 27 5.4
gi|4502809 chitotriosidase [Homo sapiens] 27 5.4
gi|7657465 podocalyxin-like 2 [Homo sapiens] 27 7.0
gi|40254871 transmembrane protease, serine 11E [Homo sapiens] 27 7.0
gi|153791781 transmembrane protease, serine 11E2 [Homo sapiens] 27 7.0
>gi|28373084 sialyltransferase 6 isoform h [Homo sapiens]
Length = 139
Score = 285 bits (730), Expect = 6e-78
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSKYDRLGFLLNLDSKLPAELAT 60
MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSKYDRLGFLLNLDSKLPAELAT
Sbjct: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSKYDRLGFLLNLDSKLPAELAT 60
Query: 61 KYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIREFVPPFGIKGQVLDA 120
KYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIREFVPPFGIKGQVLDA
Sbjct: 61 KYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIREFVPPFGIKGQVLDA 120
Query: 121 QYPARERVSAEAGESSRHH 139
QYPARERVSAEAGESSRHH
Sbjct: 121 QYPARERVSAEAGESSRHH 139
>gi|28373076 sialyltransferase 6 isoform e [Homo sapiens]
Length = 155
Score = 273 bits (699), Expect = 3e-74
Identities = 138/155 (89%), Positives = 139/155 (89%), Gaps = 16/155 (10%)
Query: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDS----------------KYDRL 44
MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDS +YDRL
Sbjct: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSNSVVLSFDSAGQTLGSEYDRL 60
Query: 45 GFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARI 104
GFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARI
Sbjct: 61 GFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARI 120
Query: 105 REFVPPFGIKGQVLDAQYPARERVSAEAGESSRHH 139
REFVPPFGIKGQVLDAQYPARERVSAEAGESSRHH
Sbjct: 121 REFVPPFGIKGQVLDAQYPARERVSAEAGESSRHH 155
>gi|28373072 sialyltransferase 6 isoform c [Homo sapiens]
Length = 170
Score = 268 bits (684), Expect = 1e-72
Identities = 138/170 (81%), Positives = 139/170 (81%), Gaps = 31/170 (18%)
Query: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEED---------------------- 38
MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEED
Sbjct: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSSKYSHSSSPQEKPVADSVVLS 60
Query: 39 ---------SKYDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP 89
S+YDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP
Sbjct: 61 FDSAGQTLGSEYDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP 120
Query: 90 APMFLDDSFRKWARIREFVPPFGIKGQVLDAQYPARERVSAEAGESSRHH 139
APMFLDDSFRKWARIREFVPPFGIKGQVLDAQYPARERVSAEAGESSRHH
Sbjct: 121 APMFLDDSFRKWARIREFVPPFGIKGQVLDAQYPARERVSAEAGESSRHH 170
>gi|28373082 sialyltransferase 6 isoform g [Homo sapiens]
Length = 359
Score = 240 bits (613), Expect = 2e-64
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSKYDRLGFLLNLDSKLPAELAT 60
MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSKYDRLGFLLNLDSKLPAELAT
Sbjct: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSKYDRLGFLLNLDSKLPAELAT 60
Query: 61 KYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIREFVPPFGIKGQ 116
KYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIREFVPPFGIKGQ
Sbjct: 61 KYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIREFVPPFGIKGQ 116
>gi|28373074 sialyltransferase 6 isoform d [Homo sapiens]
Length = 277
Score = 228 bits (582), Expect = 9e-61
Identities = 115/132 (87%), Positives = 116/132 (87%), Gaps = 16/132 (12%)
Query: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDS----------------KYDRL 44
MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDS +YDRL
Sbjct: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSNSVVLSFDSAGQTLGSEYDRL 60
Query: 45 GFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARI 104
GFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARI
Sbjct: 61 GFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARI 120
Query: 105 REFVPPFGIKGQ 116
REFVPPFGIKGQ
Sbjct: 121 REFVPPFGIKGQ 132
>gi|5454060 sialyltransferase 6 isoform j [Homo sapiens]
Length = 375
Score = 228 bits (582), Expect = 9e-61
Identities = 115/132 (87%), Positives = 116/132 (87%), Gaps = 16/132 (12%)
Query: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDS----------------KYDRL 44
MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDS +YDRL
Sbjct: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSNSVVLSFDSAGQTLGSEYDRL 60
Query: 45 GFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARI 104
GFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARI
Sbjct: 61 GFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARI 120
Query: 105 REFVPPFGIKGQ 116
REFVPPFGIKGQ
Sbjct: 121 REFVPPFGIKGQ 132
>gi|28373070 sialyltransferase 6 isoform b [Homo sapiens]
Length = 390
Score = 223 bits (567), Expect = 5e-59
Identities = 115/147 (78%), Positives = 116/147 (78%), Gaps = 31/147 (21%)
Query: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEED---------------------- 38
MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEED
Sbjct: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSSKYSHSSSPQEKPVADSVVLS 60
Query: 39 ---------SKYDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP 89
S+YDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP
Sbjct: 61 FDSAGQTLGSEYDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP 120
Query: 90 APMFLDDSFRKWARIREFVPPFGIKGQ 116
APMFLDDSFRKWARIREFVPPFGIKGQ
Sbjct: 121 APMFLDDSFRKWARIREFVPPFGIKGQ 147
>gi|28373078 sialyltransferase 6 isoform f [Homo sapiens]
Length = 429
Score = 197 bits (502), Expect = 2e-51
Identities = 114/186 (61%), Positives = 115/186 (61%), Gaps = 70/186 (37%)
Query: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEED----------------SKYDRL 44
MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEED S+YDRL
Sbjct: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSNSVVLSFDSAGQTLGSEYDRL 60
Query: 45 GFLLNLDSKL------------------PAE----------------------------- 57
GFLLNLDSKL P E
Sbjct: 61 GFLLNLDSKLSPRTLCTVVFGLDCILESPGEPKKLLMPASHPLEILKSLSEDAAFALGFL 120
Query: 58 -------LATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIREFVPP 110
LATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIREFVPP
Sbjct: 121 KLPRPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIREFVPP 180
Query: 111 FGIKGQ 116
FGIKGQ
Sbjct: 181 FGIKGQ 186
>gi|28373068 sialyltransferase 6 isoform a [Homo sapiens]
Length = 444
Score = 192 bits (487), Expect = 1e-49
Identities = 114/201 (56%), Positives = 115/201 (57%), Gaps = 85/201 (42%)
Query: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEED---------------------- 38
MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEED
Sbjct: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSSKYSHSSSPQEKPVADSVVLS 60
Query: 39 ---------SKYDRLGFLLNLDSKL------------------PAE-------------- 57
S+YDRLGFLLNLDSKL P E
Sbjct: 61 FDSAGQTLGSEYDRLGFLLNLDSKLSPRTLCTVVFGLDCILESPGEPKKLLMPASHPLEI 120
Query: 58 ----------------------LATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLD 95
LATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLD
Sbjct: 121 LKSLSEDAAFALGFLKLPRPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLD 180
Query: 96 DSFRKWARIREFVPPFGIKGQ 116
DSFRKWARIREFVPPFGIKGQ
Sbjct: 181 DSFRKWARIREFVPPFGIKGQ 201
>gi|28373086 sialyltransferase 6 isoform i [Homo sapiens]
Length = 413
Score = 144 bits (362), Expect = 3e-35
Identities = 96/176 (54%), Positives = 98/176 (55%), Gaps = 66/176 (37%)
Query: 1 MGLLVFVRNLLLALCLFLV------------------------LGFLYYSAWKLH----- 31
MGLLVFVRNLLLALCLFLV LGFL KL
Sbjct: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSKYDRLGFLLNLDSKLSPRTLC 60
Query: 32 -----------------------------LLQWEEDSKYDRLGFLLNLDSKLP--AELAT 60
L ED+ + LGFL KLP AELAT
Sbjct: 61 TVVFGLDCILESPGEPKKLLMPASHPLEILKSLSEDAAF-ALGFL-----KLPRPAELAT 114
Query: 61 KYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIREFVPPFGIKGQ 116
KYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIREFVPPFGIKGQ
Sbjct: 115 KYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIREFVPPFGIKGQ 170
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 28.9 bits (63), Expect = 1.4
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 43 RLGFLL--NLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPM 92
RLG +L N D L EL TKYAN + G C +++ + +K PM
Sbjct: 182 RLGLVLMWNHDDSLLLELDTKYANKTCGLCGDFNGMPVVSELLSHNTKLTPM 233
>gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens]
Length = 2013
Score = 28.9 bits (63), Expect = 1.4
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 43 RLGFLL--NLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPM 92
RLG +L N D L EL TKYAN + G C +++ + +K PM
Sbjct: 182 RLGLVLMWNHDDSLLLELDTKYANKTCGLCGDFNGMPVVSELLSHNTKLTPM 233
>gi|27262638 sperm associated antigen 1 [Homo sapiens]
Length = 926
Score = 27.7 bits (60), Expect = 3.1
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 118 LDAQYPARERVSAEAGESSRH 138
L A +PA+E +S +AG+SS H
Sbjct: 592 LQAWHPAKEMISKQAGDSSSH 612
>gi|27262636 sperm associated antigen 1 [Homo sapiens]
Length = 926
Score = 27.7 bits (60), Expect = 3.1
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 118 LDAQYPARERVSAEAGESSRH 138
L A +PA+E +S +AG+SS H
Sbjct: 592 LQAWHPAKEMISKQAGDSSSH 612
>gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein
[Homo sapiens]
Length = 593
Score = 27.3 bits (59), Expect = 4.1
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 67 EGACKPGYASALMTAIFPRFSKPAPMFLDD 96
EG PG AS TA+FPR ++P F D
Sbjct: 157 EGLGPPGPASLGTTALFPRKAQPPQAFRGD 186
>gi|4507043 solute carrier family 6 member 4 [Homo sapiens]
Length = 630
Score = 26.9 bits (58), Expect = 5.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 12 LALCLFLVLGFLYYSAWK 29
LALC+ L+ +Y+S WK
Sbjct: 255 LALCIMLIFTVIYFSIWK 272
>gi|4502809 chitotriosidase [Homo sapiens]
Length = 466
Score = 26.9 bits (58), Expect = 5.4
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 13 ALCLFLVLGFLYYSAWKLHLLQWEEDSKYDRLGFLLNLDSKLPAELATKYANF 65
+LC L+ F + +L +W +++ Y L ++ KL LA NF
Sbjct: 49 SLCTHLIYAFAGMTNHQLSTTEWNDETLYQEFNGLKKMNPKLKTLLAIGGWNF 101
>gi|7657465 podocalyxin-like 2 [Homo sapiens]
Length = 605
Score = 26.6 bits (57), Expect = 7.0
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 2 GLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSKYDRLGFL---------LNLDS 52
G L V ++ A+C+ ++ L Y+ W+ L + + S + L F+ L++ S
Sbjct: 499 GTLFVVLVVIGAICIIIIALGLLYNCWQRRLPKLKHVSHGEELRFVENGCHDNPTLDVAS 558
Query: 53 KLPAELATKYANFSEGAC--KPGYASALM 79
+E+ K+ + + G PG ALM
Sbjct: 559 DSQSEMQEKHPSLNGGGALNGPGSWGALM 587
>gi|40254871 transmembrane protease, serine 11E [Homo sapiens]
Length = 423
Score = 26.6 bits (57), Expect = 7.0
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLH----LLQWEEDSKYDRLG 45
+GL++F+ ++LA+C+ L + ++ Y+ K + L + D Y G
Sbjct: 21 IGLVIFISLIVLAVCIGLTVHYVRYNQKKTYNYYSTLSFTTDKLYAEFG 69
>gi|153791781 transmembrane protease, serine 11E2 [Homo sapiens]
Length = 423
Score = 26.6 bits (57), Expect = 7.0
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLH----LLQWEEDSKYDRLG 45
+GL++F+ ++LA+C+ L + ++ Y+ K + L + D Y G
Sbjct: 21 IGLVIFISLIVLAVCIGLTVHYVRYNQKKTYNYYSTLSFTTDKLYAEFG 69
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.140 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,341,045
Number of Sequences: 37866
Number of extensions: 215596
Number of successful extensions: 583
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 554
Number of HSP's gapped (non-prelim): 28
length of query: 139
length of database: 18,247,518
effective HSP length: 92
effective length of query: 47
effective length of database: 14,763,846
effective search space: 693900762
effective search space used: 693900762
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.