Search of human proteins with 28372547

Search of human proteins with 28372547

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|28372547 N-6 adenine-specific DNA methyltransferase 2
(putative) [Homo sapiens]
         (214 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|28372547 N-6 adenine-specific DNA methyltransferase 2 (putati...   439   e-123
gi|41350212 bromodomain containing 7 [Homo sapiens]                    30   1.5  
gi|70887780 sperm associated antigen 16 isoform 2 [Homo sapiens]       29   3.4  
gi|70909324 sperm associated antigen 16 isoform 1 [Homo sapiens]       29   3.4  
gi|5803225 tyrosine 3/tryptophan 5 -monooxygenase activation pro...    28   4.5  
gi|145312241 differentially expressed in FDCP 6 homolog [Homo sa...    28   5.8  
gi|222418587 hypothetical protein LOC57495 [Homo sapiens]              28   7.6  
gi|27754773 protocadherin 1 isoform 2 precursor [Homo sapiens]         27   10.0 
gi|27754771 protocadherin 1 isoform 1 precursor [Homo sapiens]         27   10.0 

>gi|28372547 N-6 adenine-specific DNA methyltransferase 2 (putative)
           [Homo sapiens]
          Length = 214

 Score =  439 bits (1128), Expect = e-123
 Identities = 214/214 (100%), Positives = 214/214 (100%)

Query: 1   MSDLEDDETPQLSAHALAALQEFYAEQKQQIEPGEDDKYNIGIIEENWQLSQFWYSQETA 60
           MSDLEDDETPQLSAHALAALQEFYAEQKQQIEPGEDDKYNIGIIEENWQLSQFWYSQETA
Sbjct: 1   MSDLEDDETPQLSAHALAALQEFYAEQKQQIEPGEDDKYNIGIIEENWQLSQFWYSQETA 60

Query: 61  LQLAQEAIAAVGEGGRIACVSAPSVYQKLRELCRENFSIYIFEYDKRFAMYGEEFIFYDY 120
           LQLAQEAIAAVGEGGRIACVSAPSVYQKLRELCRENFSIYIFEYDKRFAMYGEEFIFYDY
Sbjct: 61  LQLAQEAIAAVGEGGRIACVSAPSVYQKLRELCRENFSIYIFEYDKRFAMYGEEFIFYDY 120

Query: 121 NNPLDLPERIAAHSFDIVIADPPYLSEECLRKTSETVKYLTRGKILLCTGAIMEEQAAEL 180
           NNPLDLPERIAAHSFDIVIADPPYLSEECLRKTSETVKYLTRGKILLCTGAIMEEQAAEL
Sbjct: 121 NNPLDLPERIAAHSFDIVIADPPYLSEECLRKTSETVKYLTRGKILLCTGAIMEEQAAEL 180

Query: 181 LGVKMCTFVPRHTRNLANEFRCYVNYDSGLDCGI 214
           LGVKMCTFVPRHTRNLANEFRCYVNYDSGLDCGI
Sbjct: 181 LGVKMCTFVPRHTRNLANEFRCYVNYDSGLDCGI 214


>gi|41350212 bromodomain containing 7 [Homo sapiens]
          Length = 651

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 97  FSIYIFEYDKRFAMYGEE---FIFYDYNNPLDLPERIAAHSFDIVIADPPYLSEECL 150
           +S Y   YD  FA   ++    I+  Y    DLP   + H F     D PY+  + L
Sbjct: 407 YSSYAPHYDSTFANISKDDSDLIYSTYGEDSDLPSDFSIHEFLATCQDYPYVMADSL 463


>gi|70887780 sperm associated antigen 16 isoform 2 [Homo sapiens]
          Length = 183

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 18/54 (33%), Positives = 28/54 (51%)

Query: 13 SAHALAALQEFYAEQKQQIEPGEDDKYNIGIIEENWQLSQFWYSQETALQLAQE 66
          +A A+AA   +Y EQ    E  EDD     I ++N+ + +       A+Q+AQE
Sbjct: 32 TADAVAAEGAYYLEQVTITEASEDDYEYEEIPDDNFSIPEGEEDLAKAIQMAQE 85


>gi|70909324 sperm associated antigen 16 isoform 1 [Homo sapiens]
          Length = 631

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 18/54 (33%), Positives = 28/54 (51%)

Query: 13 SAHALAALQEFYAEQKQQIEPGEDDKYNIGIIEENWQLSQFWYSQETALQLAQE 66
          +A A+AA   +Y EQ    E  EDD     I ++N+ + +       A+Q+AQE
Sbjct: 32 TADAVAAEGAYYLEQVTITEASEDDYEYEEIPDDNFSIPEGEEDLAKAIQMAQE 85


>gi|5803225 tyrosine 3/tryptophan 5 -monooxygenase activation
           protein, epsilon polypeptide [Homo sapiens]
          Length = 255

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 117 FYDYNNPLDLPERIAAHSFDIVIADPPYLSEECLRKTSETVKYLTRGKILLCTGAIM--- 173
           +Y+  N  D   R+A  +FD  IA+   LSEE   K S  +  L R  + L T  +    
Sbjct: 181 YYEILNSPDRACRLAKAAFDDAIAELDTLSEESY-KDSTLIMQLLRDNLTLWTSDMQGDG 239

Query: 174 EEQAAELL 181
           EEQ  E L
Sbjct: 240 EEQNKEAL 247


>gi|145312241 differentially expressed in FDCP 6 homolog [Homo
           sapiens]
          Length = 631

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 6   DDETPQLSAHALAALQEFYAEQKQQIEPGEDDKYNIGIIEENWQLSQFWYSQETALQLAQ 65
           D+E+ +++   L   +E   +Q  Q++  E ++Y     +E  +L Q    Q  +LQ AQ
Sbjct: 451 DEESVRIAQTRLLEEEEEKLKQLMQLKE-EQERYIERAQQEKEELQQEMAQQSRSLQQAQ 509

Query: 66  EAIAAVGEGGRIACVSAPSVYQKLRE 91
           + +  V +  + A     +  +KLR+
Sbjct: 510 QQLEEVRQNRQRADEDVEAAQRKLRQ 535


>gi|222418587 hypothetical protein LOC57495 [Homo sapiens]
          Length = 1742

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)

Query: 84 SVYQKLRELCRENFSI 99
          +VY KLRE CREN+ +
Sbjct: 62 NVYPKLREFCRENYGL 77


>gi|27754773 protocadherin 1 isoform 2 precursor [Homo sapiens]
          Length = 1237

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 17/99 (17%)

Query: 56  SQETALQLAQEAIAAVGEGGRIACVSAPSVYQKLRELCRENFSIYIFEYDKRFAMYGEEF 115
           ++ETA+ L Q +    GE   + CV A  V  +LR+                     ++ 
Sbjct: 409 AEETAVALVQVSDRDEGENAAVTCVVAGDVPFQLRQASETGSD-------------SKKK 455

Query: 116 IFYDYNNPLDLPERIAAHSFDIVIAD---PPYLSEECLR 151
            F     PLD  E++  ++ +IV  D   PP  S   L+
Sbjct: 456 YFLQTTTPLDY-EKVKDYTIEIVAVDSGNPPLSSTNSLK 493


>gi|27754771 protocadherin 1 isoform 1 precursor [Homo sapiens]
          Length = 1060

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 17/99 (17%)

Query: 56  SQETALQLAQEAIAAVGEGGRIACVSAPSVYQKLRELCRENFSIYIFEYDKRFAMYGEEF 115
           ++ETA+ L Q +    GE   + CV A  V  +LR+                     ++ 
Sbjct: 409 AEETAVALVQVSDRDEGENAAVTCVVAGDVPFQLRQASETGSD-------------SKKK 455

Query: 116 IFYDYNNPLDLPERIAAHSFDIVIAD---PPYLSEECLR 151
            F     PLD  E++  ++ +IV  D   PP  S   L+
Sbjct: 456 YFLQTTTPLDY-EKVKDYTIEIVAVDSGNPPLSSTNSLK 493


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,414,692
Number of Sequences: 37866
Number of extensions: 353139
Number of successful extensions: 765
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 761
Number of HSP's gapped (non-prelim): 9
length of query: 214
length of database: 18,247,518
effective HSP length: 98
effective length of query: 116
effective length of database: 14,536,650
effective search space: 1686251400
effective search space used: 1686251400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.