Search of human proteins with 27544939

Search of human proteins with 27544939

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|27544939 chromosome 3 open reading frame 10 [Homo sapiens]
         (75 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|27544939 chromosome 3 open reading frame 10 [Homo sapiens]         150   3e-37
gi|239753482 PREDICTED: similar to HSPC300 [Homo sapiens]             137   2e-33
gi|51479152 ATP synthase, H+ transporting, mitochondrial F0 comp...    29   0.94 
gi|5453559 ATP synthase, H+ transporting, mitochondrial F0 compl...    29   0.94 
gi|13775238 plasmalemma vesicle associated protein [Homo sapiens]      28   1.6  
gi|10835133 Fc fragment of IgG, high affinity Ia, receptor (CD64...    27   4.6  
gi|63055063 Fc fragment of IgG, high affinity Ib, receptor (CD64...    27   4.6  
gi|14249704 RAS-like, estrogen-regulated, growth inhibitor [Homo...    26   6.1  
gi|134152674 rabaptin, RAB GTPase binding effector protein 1 iso...    26   6.1  
gi|31377798 rabaptin, RAB GTPase binding effector protein 1 isof...    26   6.1  

>gi|27544939 chromosome 3 open reading frame 10 [Homo sapiens]
          Length = 75

 Score =  150 bits (378), Expect = 3e-37
 Identities = 75/75 (100%), Positives = 75/75 (100%)

Query: 1  MAGQEDPVQREIHQDWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERR 60
          MAGQEDPVQREIHQDWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERR
Sbjct: 1  MAGQEDPVQREIHQDWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERR 60

Query: 61 IEYIEARVTKGETLT 75
          IEYIEARVTKGETLT
Sbjct: 61 IEYIEARVTKGETLT 75


>gi|239753482 PREDICTED: similar to HSPC300 [Homo sapiens]
          Length = 85

 Score =  137 bits (344), Expect = 2e-33
 Identities = 68/69 (98%), Positives = 69/69 (100%)

Query: 1  MAGQEDPVQREIHQDWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERR 60
          MAGQEDPVQREIHQDWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERR
Sbjct: 1  MAGQEDPVQREIHQDWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERR 60

Query: 61 IEYIEARVT 69
          IEYIEARV+
Sbjct: 61 IEYIEARVS 69


>gi|51479152 ATP synthase, H+ transporting, mitochondrial F0
          complex, subunit d isoform b [Homo sapiens]
          Length = 137

 Score = 28.9 bits (63), Expect = 0.94
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 15 DWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEARVTK 70
          DW    + EII  + K IA  L S++ +  SRLA L E   A++    Y +A V K
Sbjct: 12 DWV--AFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAID--WAYYKANVAK 63


>gi|5453559 ATP synthase, H+ transporting, mitochondrial F0
          complex, subunit d isoform a [Homo sapiens]
          Length = 161

 Score = 28.9 bits (63), Expect = 0.94
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 15 DWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEARVTK 70
          DW    + EII  + K IA  L S++ +  SRLA L E   A++    Y +A V K
Sbjct: 12 DWV--AFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAID--WAYYKANVAK 63


>gi|13775238 plasmalemma vesicle associated protein [Homo sapiens]
          Length = 442

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 17/53 (32%), Positives = 25/53 (47%)

Query: 18  NREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEARVTK 70
           N+ Y+  I  S K+  D     + SC + L  LN+K+  LE  I   +   TK
Sbjct: 129 NQRYMAAIILSEKQCRDQFKDMNKSCDALLFMLNQKVKTLEVEIAKEKTICTK 181


>gi|10835133 Fc fragment of IgG, high affinity Ia, receptor (CD64)
           [Homo sapiens]
          Length = 374

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)

Query: 1   MAGQEDPVQREIHQDW 16
           ++G+ DP+Q EIH+ W
Sbjct: 89  LSGRSDPIQLEIHRGW 104


>gi|63055063 Fc fragment of IgG, high affinity Ib, receptor (CD64)
           isoform a [Homo sapiens]
          Length = 280

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)

Query: 1   MAGQEDPVQREIHQDW 16
           ++G+ DP+Q EIH+ W
Sbjct: 89  LSGRSDPIQLEIHRGW 104


>gi|14249704 RAS-like, estrogen-regulated, growth inhibitor [Homo
          sapiens]
          Length = 199

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 10/15 (66%), Positives = 11/15 (73%)

Query: 2  AGQEDPVQREIHQDW 16
          AGQED +QRE H  W
Sbjct: 62 AGQEDTIQREGHMRW 76


>gi|134152674 rabaptin, RAB GTPase binding effector protein 1
           isoform 2 [Homo sapiens]
          Length = 829

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 16/51 (31%), Positives = 25/51 (49%)

Query: 20  EYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEARVTK 70
           E +E      ++ A+ L S  M     +A L +KLT  E +I+ +EA   K
Sbjct: 168 ENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEASKVK 218


>gi|31377798 rabaptin, RAB GTPase binding effector protein 1 isoform
           1 [Homo sapiens]
          Length = 862

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 16/51 (31%), Positives = 25/51 (49%)

Query: 20  EYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEARVTK 70
           E +E      ++ A+ L S  M     +A L +KLT  E +I+ +EA   K
Sbjct: 168 ENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEASKVK 218


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.131    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,292,992
Number of Sequences: 37866
Number of extensions: 62230
Number of successful extensions: 301
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 10
length of query: 75
length of database: 18,247,518
effective HSP length: 47
effective length of query: 28
effective length of database: 16,467,816
effective search space: 461098848
effective search space used: 461098848
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.