Search of human proteins with 253314453

Search of human proteins with 253314453

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|253314453 RAD52 motif 1 isoform 7 [Homo sapiens]
         (116 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|253314453 RAD52 motif 1 isoform 7 [Homo sapiens]                   241   9e-65
gi|253314472 RAD52 motif 1 isoform 8 [Homo sapiens]                   227   2e-60
gi|253314451 RAD52 motif 1 isoform 6 [Homo sapiens]                   227   2e-60
gi|253314447 RAD52 motif 1 isoform 5 [Homo sapiens]                   227   2e-60
gi|77873934 RAD52 motif 1 isoform 2 [Homo sapiens]                    207   1e-54
gi|21717826 RAD52 motif 1 isoform 1 [Homo sapiens]                    207   1e-54
gi|253314445 RAD52 motif 1 isoform 4 [Homo sapiens]                   207   1e-54
gi|253314443 RAD52 motif 1 isoform 3 [Homo sapiens]                   207   1e-54
gi|239745785 PREDICTED: similar to hCG2007264 [Homo sapiens]           98   1e-21
gi|54607124 RNA binding motif protein 15B [Homo sapiens]               32   0.083
gi|4505941 DNA directed RNA polymerase II polypeptide B [Homo sa...    27   3.5  
gi|34740339 dead end homolog 1 [Homo sapiens]                          27   4.5  
gi|100816407 Bardet-Biedl syndrome 10 [Homo sapiens]                   26   5.9  

>gi|253314453 RAD52 motif 1 isoform 7 [Homo sapiens]
          Length = 116

 Score =  241 bits (615), Expect = 9e-65
 Identities = 116/116 (100%), Positives = 116/116 (100%)

Query: 1   MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK 60
           MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK
Sbjct: 1   MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK 60

Query: 61  QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKDHYHSL 116
           QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKDHYHSL
Sbjct: 61  QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKDHYHSL 116


>gi|253314472 RAD52 motif 1 isoform 8 [Homo sapiens]
          Length = 261

 Score =  227 bits (578), Expect = 2e-60
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK 60
           MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK
Sbjct: 1   MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK 60

Query: 61  QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK 110
           QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK
Sbjct: 61  QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK 110


>gi|253314451 RAD52 motif 1 isoform 6 [Homo sapiens]
          Length = 143

 Score =  227 bits (578), Expect = 2e-60
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK 60
           MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK
Sbjct: 1   MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK 60

Query: 61  QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK 110
           QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK
Sbjct: 61  QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK 110


>gi|253314447 RAD52 motif 1 isoform 5 [Homo sapiens]
          Length = 228

 Score =  227 bits (578), Expect = 2e-60
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK 60
           MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK
Sbjct: 1   MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK 60

Query: 61  QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK 110
           QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK
Sbjct: 61  QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK 110


>gi|77873934 RAD52 motif 1 isoform 2 [Homo sapiens]
          Length = 236

 Score =  207 bits (527), Expect = 1e-54
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 10  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 69
           HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK
Sbjct: 33  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 92

Query: 70  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK 110
           VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK
Sbjct: 93  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK 133


>gi|21717826 RAD52 motif 1 isoform 1 [Homo sapiens]
          Length = 284

 Score =  207 bits (527), Expect = 1e-54
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 10  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 69
           HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK
Sbjct: 33  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 92

Query: 70  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK 110
           VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK
Sbjct: 93  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK 133


>gi|253314445 RAD52 motif 1 isoform 4 [Homo sapiens]
          Length = 251

 Score =  207 bits (527), Expect = 1e-54
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 10  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 69
           HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK
Sbjct: 33  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 92

Query: 70  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK 110
           VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK
Sbjct: 93  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK 133


>gi|253314443 RAD52 motif 1 isoform 3 [Homo sapiens]
          Length = 166

 Score =  207 bits (527), Expect = 1e-54
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 10  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 69
           HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK
Sbjct: 33  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 92

Query: 70  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK 110
           VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK
Sbjct: 93  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK 133


>gi|239745785 PREDICTED: similar to hCG2007264 [Homo sapiens]
          Length = 175

 Score = 98.2 bits (243), Expect = 1e-21
 Identities = 50/60 (83%), Positives = 50/60 (83%)

Query: 11  SLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVKV 70
           SL  AFSQF LLYSVRVFPNAAVAH GFY VIKFYSA A H AQKAC RKQLFQ SPVKV
Sbjct: 105 SLGQAFSQFDLLYSVRVFPNAAVAHSGFYGVIKFYSAMAVHGAQKACHRKQLFQTSPVKV 164


>gi|54607124 RNA binding motif protein 15B [Homo sapiens]
          Length = 890

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 15  AFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLG 73
           AF ++G++  V V    A    G YA +KF +   AHRA+ A   + +  ++P+K+  G
Sbjct: 356 AFEKYGIIEEV-VIKRPARGQGGAYAFLKFQNLDMAHRAKVAMSGR-VIGRNPIKIGYG 412


>gi|4505941 DNA directed RNA polymerase II polypeptide B [Homo
           sapiens]
          Length = 1174

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 5   VPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQ 64
           +P   +S+    S  G      V  N +    GF+  + FY +     ++K  D++++F+
Sbjct: 772 LPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSV-FYRSYKEQESKKGFDQEEVFE 830

Query: 65  KSPVKVRLGTRH 76
           K   +   G RH
Sbjct: 831 KPTRETCQGMRH 842


>gi|34740339 dead end homolog 1 [Homo sapiens]
          Length = 353

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 22  LYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKA 56
           L   R+ P+   A PG  A++KF S RAA  A+KA
Sbjct: 165 LQEARLLPSPGPA-PGQIALLKFSSHRAAAMAKKA 198


>gi|100816407 Bardet-Biedl syndrome 10 [Homo sapiens]
          Length = 723

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 69  KVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCS 105
           K +   +H   Q+  L ++S K  +L +YY G NG S
Sbjct: 293 KTKAIMKHLHSQNVKLLISSVKQPDLVSYYAGVNGIS 329


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.327    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,571,457
Number of Sequences: 37866
Number of extensions: 151088
Number of successful extensions: 382
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 371
Number of HSP's gapped (non-prelim): 14
length of query: 116
length of database: 18,247,518
effective HSP length: 86
effective length of query: 30
effective length of database: 14,991,042
effective search space: 449731260
effective search space used: 449731260
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.