Search of human proteins with 251831109

Search of human proteins with 251831109

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|251831109 cytochrome c oxidase subunit I [Homo sapiens]
         (513 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|196123581 cytochrome c oxidase subunit I [Homo sapiens neande...  1056   0.0  
gi|251831109 cytochrome c oxidase subunit I [Homo sapiens]           1056   0.0  
gi|28558982 thyroid peroxidase isoform a [Homo sapiens]                31   3.1  
gi|28558988 thyroid peroxidase isoform d [Homo sapiens]                31   3.1  
gi|28558990 thyroid peroxidase isoform e [Homo sapiens]                31   3.1  
gi|4758326 coagulation factor II (thrombin) receptor-like 2 prec...    30   5.3  
gi|19557691 surfeit 4 [Homo sapiens]                                   30   6.9  
gi|22749509 hypothetical protein LOC255119 [Homo sapiens]              30   6.9  

>gi|196123581 cytochrome c oxidase subunit I [Homo sapiens
           neanderthalensis]
          Length = 513

 Score = 1056 bits (2732), Expect = 0.0
 Identities = 513/513 (100%), Positives = 513/513 (100%)

Query: 1   MFADRWLFSTNHKDIGTLYLLFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTA 60
           MFADRWLFSTNHKDIGTLYLLFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTA
Sbjct: 1   MFADRWLFSTNHKDIGTLYLLFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTA 60

Query: 61  HAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASAMVEA 120
           HAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASAMVEA
Sbjct: 61  HAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASAMVEA 120

Query: 121 GAGTGWTVYPPLAGNYSHPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQ 180
           GAGTGWTVYPPLAGNYSHPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQ
Sbjct: 121 GAGTGWTVYPPLAGNYSHPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQ 180

Query: 181 TPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGH 240
           TPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGH
Sbjct: 181 TPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGH 240

Query: 241 PEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVD 300
           PEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVD
Sbjct: 241 PEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVD 300

Query: 301 TRAYFTSATMIIAIPTGVKVFSWLATLHGSNMKWSAAVLWALGFIFLFTVGGLTGIVLAN 360
           TRAYFTSATMIIAIPTGVKVFSWLATLHGSNMKWSAAVLWALGFIFLFTVGGLTGIVLAN
Sbjct: 301 TRAYFTSATMIIAIPTGVKVFSWLATLHGSNMKWSAAVLWALGFIFLFTVGGLTGIVLAN 360

Query: 361 SSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFIHWFPLFSGYTLDQTYAKIHFTIMFIG 420
           SSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFIHWFPLFSGYTLDQTYAKIHFTIMFIG
Sbjct: 361 SSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFIHWFPLFSGYTLDQTYAKIHFTIMFIG 420

Query: 421 VNLTFFPQHFLGLSGMPRRYSDYPDAYTTWNILSSVGSFISLTAVMLMIFMIWEAFASKR 480
           VNLTFFPQHFLGLSGMPRRYSDYPDAYTTWNILSSVGSFISLTAVMLMIFMIWEAFASKR
Sbjct: 421 VNLTFFPQHFLGLSGMPRRYSDYPDAYTTWNILSSVGSFISLTAVMLMIFMIWEAFASKR 480

Query: 481 KVLMVEEPSMNLEWLYGCPPPYHTFEEPVYMKS 513
           KVLMVEEPSMNLEWLYGCPPPYHTFEEPVYMKS
Sbjct: 481 KVLMVEEPSMNLEWLYGCPPPYHTFEEPVYMKS 513


>gi|251831109 cytochrome c oxidase subunit I [Homo sapiens]
          Length = 513

 Score = 1056 bits (2732), Expect = 0.0
 Identities = 513/513 (100%), Positives = 513/513 (100%)

Query: 1   MFADRWLFSTNHKDIGTLYLLFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTA 60
           MFADRWLFSTNHKDIGTLYLLFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTA
Sbjct: 1   MFADRWLFSTNHKDIGTLYLLFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTA 60

Query: 61  HAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASAMVEA 120
           HAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASAMVEA
Sbjct: 61  HAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASAMVEA 120

Query: 121 GAGTGWTVYPPLAGNYSHPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQ 180
           GAGTGWTVYPPLAGNYSHPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQ
Sbjct: 121 GAGTGWTVYPPLAGNYSHPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQ 180

Query: 181 TPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGH 240
           TPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGH
Sbjct: 181 TPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGH 240

Query: 241 PEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVD 300
           PEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVD
Sbjct: 241 PEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVD 300

Query: 301 TRAYFTSATMIIAIPTGVKVFSWLATLHGSNMKWSAAVLWALGFIFLFTVGGLTGIVLAN 360
           TRAYFTSATMIIAIPTGVKVFSWLATLHGSNMKWSAAVLWALGFIFLFTVGGLTGIVLAN
Sbjct: 301 TRAYFTSATMIIAIPTGVKVFSWLATLHGSNMKWSAAVLWALGFIFLFTVGGLTGIVLAN 360

Query: 361 SSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFIHWFPLFSGYTLDQTYAKIHFTIMFIG 420
           SSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFIHWFPLFSGYTLDQTYAKIHFTIMFIG
Sbjct: 361 SSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFIHWFPLFSGYTLDQTYAKIHFTIMFIG 420

Query: 421 VNLTFFPQHFLGLSGMPRRYSDYPDAYTTWNILSSVGSFISLTAVMLMIFMIWEAFASKR 480
           VNLTFFPQHFLGLSGMPRRYSDYPDAYTTWNILSSVGSFISLTAVMLMIFMIWEAFASKR
Sbjct: 421 VNLTFFPQHFLGLSGMPRRYSDYPDAYTTWNILSSVGSFISLTAVMLMIFMIWEAFASKR 480

Query: 481 KVLMVEEPSMNLEWLYGCPPPYHTFEEPVYMKS 513
           KVLMVEEPSMNLEWLYGCPPPYHTFEEPVYMKS
Sbjct: 481 KVLMVEEPSMNLEWLYGCPPPYHTFEEPVYMKS 513


>gi|28558982 thyroid peroxidase isoform a [Homo sapiens]
          Length = 933

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 12  HKDIGTLYL---LFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTAHAFVM 65
           H D+  L+L    F  W  + G  L  LIR  L +P  L   D + N  +T   FV+
Sbjct: 511 HPDLPGLWLHQAFFSPWTLLRGGGLDPLIRGLLARPAKLQVQDQLMNEELTERLFVL 567


>gi|28558988 thyroid peroxidase isoform d [Homo sapiens]
          Length = 889

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 12  HKDIGTLYL---LFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTAHAFVM 65
           H D+  L+L    F  W  + G  L  LIR  L +P  L   D + N  +T   FV+
Sbjct: 511 HPDLPGLWLHQAFFSPWTLLRGGGLDPLIRGLLARPAKLQVQDQLMNEELTERLFVL 567


>gi|28558990 thyroid peroxidase isoform e [Homo sapiens]
          Length = 760

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 12  HKDIGTLYL---LFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTAHAFVM 65
           H D+  L+L    F  W  + G  L  LIR  L +P  L   D + N  +T   FV+
Sbjct: 338 HPDLPGLWLHQAFFSPWTLLRGGGLDPLIRGLLARPAKLQVQDQLMNEELTERLFVL 394


>gi|4758326 coagulation factor II (thrombin) receptor-like 2
           precursor [Homo sapiens]
          Length = 374

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 42/193 (21%), Positives = 79/193 (40%), Gaps = 39/193 (20%)

Query: 237 FFGHPEVYILILPGFGM-----ISHIVTYYSGKKEPFGYM--GMVWAMMSIGFLGFIVWA 289
           F+G+    IL+L    +     I H  TY    K  +  +  G+VWA + +  L F +  
Sbjct: 173 FYGNMYCSILLLACISINRYLAIVHPFTYRGLPKHTYALVTCGLVWATVFLYMLPFFILK 232

Query: 290 HHMFTVGMDVDT---------------RAYFTSATMI-IAIPTGVKVFSWLA---TLHGS 330
              + V  D+ T                 YF S       IP  + ++ + A   TL+  
Sbjct: 233 QEYYLVQPDITTCHDVHNTCESSSPFQLYYFISLAFFGFLIPFVLIIYCYAAIIRTLNAY 292

Query: 331 NMKWSAAVLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVV-----AHFHYV--LSM 383
           + +W   V  +L  + +FT      I  A S++ +++H   Y        +F Y+  L +
Sbjct: 293 DHRWLWYVKASLLILVIFT------ICFAPSNIILIIHHANYYYNNTDGLYFIYLIALCL 346

Query: 384 GAVFAIMGGFIHW 396
           G++ + +  F+++
Sbjct: 347 GSLNSCLDPFLYF 359


>gi|19557691 surfeit 4 [Homo sapiens]
          Length = 269

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 301 TRAYFTSATMIIAIPT----GVKV-FSWLATLHGSNMKWSAAVLWALGFIFLFTVGGLTG 355
           T+ Y      +  I T    G+++ F W       +  W+   L A  F+FL  +G LTG
Sbjct: 21  TKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWNCGYLLASSFVFLNLLGQLTG 80

Query: 356 IVLANS 361
            VL  S
Sbjct: 81  CVLVLS 86


>gi|22749509 hypothetical protein LOC255119 [Homo sapiens]
          Length = 233

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 284 GFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGSN 331
           G+I +AH + T   +V    YFT    ++  PT +  ++W A +  SN
Sbjct: 128 GYIDYAHRLKTEDFEV----YFTGKKRLLPRPTDISFYNWDADIAVSN 171


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.329    0.143    0.466 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,576,148
Number of Sequences: 37866
Number of extensions: 827843
Number of successful extensions: 2076
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2074
Number of HSP's gapped (non-prelim): 8
length of query: 513
length of database: 18,247,518
effective HSP length: 107
effective length of query: 406
effective length of database: 14,195,856
effective search space: 5763517536
effective search space used: 5763517536
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.