Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 244790353
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|244790353 hypothetical protein LOC100130933 [Homo sapiens]
(62 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|244790353 hypothetical protein LOC100130933 [Homo sapiens] 129 5e-31
gi|169209671 PREDICTED: hypothetical protein isoform 1 [Homo sap... 29 0.93
gi|89040598 PREDICTED: hypothetical protein isoform 4 [Homo sapi... 29 0.93
gi|89039658 PREDICTED: hypothetical protein isoform 2 [Homo sapi... 29 0.93
gi|4503677 membrane-spanning 4-domains, subfamily A, member 2 is... 28 1.6
gi|50301236 forkhead box J1 [Homo sapiens] 28 2.1
gi|239756470 PREDICTED: hypothetical protein isoform 2 [Homo sap... 27 2.7
gi|239756468 PREDICTED: hypothetical protein isoform 3 [Homo sap... 27 2.7
gi|239750996 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|239750994 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|239745397 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|239745395 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|238624188 diffuse panbronchiolitis critical region 1 protein ... 26 6.0
gi|115387102 adenylate cyclase 2 [Homo sapiens] 26 6.0
>gi|244790353 hypothetical protein LOC100130933 [Homo sapiens]
Length = 62
Score = 129 bits (324), Expect = 5e-31
Identities = 62/62 (100%), Positives = 62/62 (100%)
Query: 1 MDQLVFKETIWNDAFWQNPWDQGGLAVIILFITAVLLLILFAIVFGLLTSTENTQCEAGE 60
MDQLVFKETIWNDAFWQNPWDQGGLAVIILFITAVLLLILFAIVFGLLTSTENTQCEAGE
Sbjct: 1 MDQLVFKETIWNDAFWQNPWDQGGLAVIILFITAVLLLILFAIVFGLLTSTENTQCEAGE 60
Query: 61 EE 62
EE
Sbjct: 61 EE 62
>gi|169209671 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 83
Score = 28.9 bits (63), Expect = 0.93
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 15 FWQNPWDQGGLAVIILFITAVLLLILFAIVFGLLTSTENTQCEAGEEE 62
F+Q+ WD V + F+ VLLL+L + S+ + E+ +E
Sbjct: 24 FFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSSPGPRRESPRKE 71
>gi|89040598 PREDICTED: hypothetical protein isoform 4 [Homo
sapiens]
Length = 83
Score = 28.9 bits (63), Expect = 0.93
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 15 FWQNPWDQGGLAVIILFITAVLLLILFAIVFGLLTSTENTQCEAGEEE 62
F+Q+ WD V + F+ VLLL+L + S+ + E+ +E
Sbjct: 24 FFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSSPGPRRESPRKE 71
>gi|89039658 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 83
Score = 28.9 bits (63), Expect = 0.93
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 15 FWQNPWDQGGLAVIILFITAVLLLILFAIVFGLLTSTENTQCEAGEEE 62
F+Q+ WD V + F+ VLLL+L + S+ + E+ +E
Sbjct: 24 FFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSSPGPRRESPRKE 71
>gi|4503677 membrane-spanning 4-domains, subfamily A, member 2
isoform 1 [Homo sapiens]
Length = 244
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 31 FITAVLLLILFAIVFGLLTSTENTQCEAGEE 61
F T +++++LF + GL ++ T C AGEE
Sbjct: 177 FSTEIVVMMLFLTILGLGSAVSLTICGAGEE 207
>gi|50301236 forkhead box J1 [Homo sapiens]
Length = 421
Score = 27.7 bits (60), Expect = 2.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 2 DQLVFKETIWNDAFWQNPWDQGG 24
D L F ET +F Q+PWD+ G
Sbjct: 368 DSLDFDETFLATSFLQHPWDESG 390
>gi|239756470 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 88
Score = 27.3 bits (59), Expect = 2.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 15 FWQNPWDQGGLAVIILFITAVLLLILFAI 43
F+Q+ WD V + F+ VLLL+L +
Sbjct: 24 FFQSTWDTVAFIVFLTFMGTVLLLLLLVV 52
>gi|239756468 PREDICTED: hypothetical protein isoform 3 [Homo
sapiens]
Length = 135
Score = 27.3 bits (59), Expect = 2.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 15 FWQNPWDQGGLAVIILFITAVLLLILFAI 43
F+Q+ WD V + F+ VLLL+L +
Sbjct: 24 FFQSTWDTVAFIVFLTFMGTVLLLLLLVV 52
>gi|239750996 PREDICTED: hypothetical protein [Homo sapiens]
Length = 88
Score = 27.3 bits (59), Expect = 2.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 15 FWQNPWDQGGLAVIILFITAVLLLILFAI 43
F+Q+ WD V + F+ VLLL+L +
Sbjct: 24 FFQSTWDTVAFIVFLTFMGTVLLLLLLVV 52
>gi|239750994 PREDICTED: hypothetical protein [Homo sapiens]
Length = 135
Score = 27.3 bits (59), Expect = 2.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 15 FWQNPWDQGGLAVIILFITAVLLLILFAI 43
F+Q+ WD V + F+ VLLL+L +
Sbjct: 24 FFQSTWDTVAFIVFLTFMGTVLLLLLLVV 52
>gi|239745397 PREDICTED: hypothetical protein [Homo sapiens]
Length = 88
Score = 27.3 bits (59), Expect = 2.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 15 FWQNPWDQGGLAVIILFITAVLLLILFAI 43
F+Q+ WD V + F+ VLLL+L +
Sbjct: 24 FFQSTWDTVAFIVFLTFMGTVLLLLLLVV 52
>gi|239745395 PREDICTED: hypothetical protein [Homo sapiens]
Length = 135
Score = 27.3 bits (59), Expect = 2.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 15 FWQNPWDQGGLAVIILFITAVLLLILFAI 43
F+Q+ WD V + F+ VLLL+L +
Sbjct: 24 FFQSTWDTVAFIVFLTFMGTVLLLLLLVV 52
>gi|238624188 diffuse panbronchiolitis critical region 1 protein [Homo
sapiens]
Length = 1393
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 8/45 (17%)
Query: 26 AVIILFITAVLLLILFAIVFGLL--------TSTENTQCEAGEEE 62
A++I+ + AV+LL++F + L+ T T+NTQ E+E
Sbjct: 1324 AIVIVVLVAVILLLVFLGLIFLVSYMMRTRRTLTQNTQYNDAEDE 1368
>gi|115387102 adenylate cyclase 2 [Homo sapiens]
Length = 1091
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 18 NPWDQGGLAVIILFITAVLLLILF--AIVFGLLTSTENT 54
+PWDQ + I+F+ +L AI+ +LTS+ +T
Sbjct: 132 SPWDQVSFFLFIIFVVYTMLPFNMRDAIIASVLTSSSHT 170
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.140 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,051,514
Number of Sequences: 37866
Number of extensions: 52540
Number of successful extensions: 305
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 14
length of query: 62
length of database: 18,247,518
effective HSP length: 35
effective length of query: 27
effective length of database: 16,922,208
effective search space: 456899616
effective search space used: 456899616
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.