Search of human proteins with 24475849

Search of human proteins with 24475849

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|24475849 hypothetical protein LOC203228 isoform b [Homo
sapiens]
         (222 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|24475849 hypothetical protein LOC203228 isoform b [Homo sapiens]   447   e-126
gi|37039612 hypothetical protein LOC203228 isoform a [Homo sapiens]   446   e-125
gi|42558246 lysocardiolipin acyltransferase 1 isoform 1 [Homo sa...    31   0.74 
gi|50659059 lysocardiolipin acyltransferase 1 isoform 2 [Homo sa...    31   0.74 
gi|110224476 prosaposin isoform b preproprotein [Homo sapiens]         31   0.96 
gi|94536864 hypothetical protein LOC138724 isoform D [Homo sapiens]    30   1.6  
gi|94536862 hypothetical protein LOC138724 isoform C [Homo sapiens]    30   1.6  
gi|94536860 hypothetical protein LOC138724 isoform B [Homo sapiens]    30   1.6  
gi|94681096 hypothetical protein LOC138724 isoform A [Homo sapiens]    30   1.6  
gi|110224479 prosaposin isoform c preproprotein [Homo sapiens]         29   2.8  
gi|110735439 Werner syndrome protein [Homo sapiens]                    29   2.8  
gi|169218196 PREDICTED: similar to Werner syndrome ATP-dependent...    29   2.8  
gi|11386147 prosaposin isoform a preproprotein [Homo sapiens]          28   4.8  
gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo ...    28   8.2  
gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo ...    28   8.2  
gi|75677345 transmembrane protein 98 [Homo sapiens]                    28   8.2  
gi|75677343 transmembrane protein 98 [Homo sapiens]                    28   8.2  

>gi|24475849 hypothetical protein LOC203228 isoform b [Homo sapiens]
          Length = 222

 Score =  447 bits (1151), Expect = e-126
 Identities = 222/222 (100%), Positives = 222/222 (100%)

Query: 1   MSTLCPPPSPAVAKTEIALSGKSPLLAATFAYWDNILGPRVRHIWAPKTEQVLLSDGEIT 60
           MSTLCPPPSPAVAKTEIALSGKSPLLAATFAYWDNILGPRVRHIWAPKTEQVLLSDGEIT
Sbjct: 1   MSTLCPPPSPAVAKTEIALSGKSPLLAATFAYWDNILGPRVRHIWAPKTEQVLLSDGEIT 60

Query: 61  FLANHTLNGEILRNAESGAIDVKFFVLSEKGVIIVSLIFDGNWNGDRSTYGLSIILPQTE 120
           FLANHTLNGEILRNAESGAIDVKFFVLSEKGVIIVSLIFDGNWNGDRSTYGLSIILPQTE
Sbjct: 61  FLANHTLNGEILRNAESGAIDVKFFVLSEKGVIIVSLIFDGNWNGDRSTYGLSIILPQTE 120

Query: 121 LSFYLPLHRVCVDRLTHIIRKGRIWMHKERQENVQKIILEGTERMEDQGQSIIPMLTGEV 180
           LSFYLPLHRVCVDRLTHIIRKGRIWMHKERQENVQKIILEGTERMEDQGQSIIPMLTGEV
Sbjct: 121 LSFYLPLHRVCVDRLTHIIRKGRIWMHKERQENVQKIILEGTERMEDQGQSIIPMLTGEV 180

Query: 181 IPVMELLSSMKSHSVPEEIDIADTVLNDDDIGDSCHEGFLLK 222
           IPVMELLSSMKSHSVPEEIDIADTVLNDDDIGDSCHEGFLLK
Sbjct: 181 IPVMELLSSMKSHSVPEEIDIADTVLNDDDIGDSCHEGFLLK 222


>gi|37039612 hypothetical protein LOC203228 isoform a [Homo sapiens]
          Length = 481

 Score =  446 bits (1146), Expect = e-125
 Identities = 221/221 (100%), Positives = 221/221 (100%)

Query: 1   MSTLCPPPSPAVAKTEIALSGKSPLLAATFAYWDNILGPRVRHIWAPKTEQVLLSDGEIT 60
           MSTLCPPPSPAVAKTEIALSGKSPLLAATFAYWDNILGPRVRHIWAPKTEQVLLSDGEIT
Sbjct: 1   MSTLCPPPSPAVAKTEIALSGKSPLLAATFAYWDNILGPRVRHIWAPKTEQVLLSDGEIT 60

Query: 61  FLANHTLNGEILRNAESGAIDVKFFVLSEKGVIIVSLIFDGNWNGDRSTYGLSIILPQTE 120
           FLANHTLNGEILRNAESGAIDVKFFVLSEKGVIIVSLIFDGNWNGDRSTYGLSIILPQTE
Sbjct: 61  FLANHTLNGEILRNAESGAIDVKFFVLSEKGVIIVSLIFDGNWNGDRSTYGLSIILPQTE 120

Query: 121 LSFYLPLHRVCVDRLTHIIRKGRIWMHKERQENVQKIILEGTERMEDQGQSIIPMLTGEV 180
           LSFYLPLHRVCVDRLTHIIRKGRIWMHKERQENVQKIILEGTERMEDQGQSIIPMLTGEV
Sbjct: 121 LSFYLPLHRVCVDRLTHIIRKGRIWMHKERQENVQKIILEGTERMEDQGQSIIPMLTGEV 180

Query: 181 IPVMELLSSMKSHSVPEEIDIADTVLNDDDIGDSCHEGFLL 221
           IPVMELLSSMKSHSVPEEIDIADTVLNDDDIGDSCHEGFLL
Sbjct: 181 IPVMELLSSMKSHSVPEEIDIADTVLNDDDIGDSCHEGFLL 221


>gi|42558246 lysocardiolipin acyltransferase 1 isoform 1 [Homo
           sapiens]
          Length = 414

 Score = 31.2 bits (69), Expect = 0.74
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 5/72 (6%)

Query: 120 ELSFYLPLHRVCVDRLTHIIRKGRIWMHKERQENVQKI--ILEGTERMEDQGQSIIPMLT 177
           E+ F++  HR  +D L       ++W HK  +E  +++    +G +     GQS+IP   
Sbjct: 280 EIHFHV--HRYPIDTLPTSKEDLQLWCHKRWEEKEERLRSFYQGEKNFYFTGQSVIPPCK 337

Query: 178 GEV-IPVMELLS 188
            E+ + V++LLS
Sbjct: 338 SELRVLVVKLLS 349


>gi|50659059 lysocardiolipin acyltransferase 1 isoform 2 [Homo
           sapiens]
          Length = 376

 Score = 31.2 bits (69), Expect = 0.74
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 5/72 (6%)

Query: 120 ELSFYLPLHRVCVDRLTHIIRKGRIWMHKERQENVQKI--ILEGTERMEDQGQSIIPMLT 177
           E+ F++  HR  +D L       ++W HK  +E  +++    +G +     GQS+IP   
Sbjct: 242 EIHFHV--HRYPIDTLPTSKEDLQLWCHKRWEEKEERLRSFYQGEKNFYFTGQSVIPPCK 299

Query: 178 GEV-IPVMELLS 188
            E+ + V++LLS
Sbjct: 300 SELRVLVVKLLS 311


>gi|110224476 prosaposin isoform b preproprotein [Homo sapiens]
          Length = 527

 Score = 30.8 bits (68), Expect = 0.96
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 143 RIWMHKERQENVQKIILEG--TERMEDQGQSIIP--MLTGEVIPVMELLSSMKSHSVPEE 198
           ++ MH + Q+  +   L G   E  E   Q+++P  + +  VIP +EL+  +K H VP +
Sbjct: 254 QMMMHMQDQQPKEICALVGFCDEVKEMPMQTLVPAKVASKNVIPALELVEPIKKHEVPAK 313

Query: 199 IDI 201
            D+
Sbjct: 314 SDV 316


>gi|94536864 hypothetical protein LOC138724 isoform D [Homo sapiens]
          Length = 1031

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 6   PPPSPAVAKTEIALSGKSPLLAATFAYWDNILGPRVRHIWAPKTEQVLLSDGEITFLANH 65
           PP  P+V   E  + G   +L+ + A W+ +   +  ++WA  +   + S    T +  H
Sbjct: 423 PPSLPSVPLLESLVMGPQGVLSESKALWETM--GQKENLWASDSPDPVHSTPPTTLMEPH 480

Query: 66  TLN-GEILRNAES 77
            +N GE L  +E+
Sbjct: 481 RINPGECLATSEA 493


>gi|94536862 hypothetical protein LOC138724 isoform C [Homo sapiens]
          Length = 1006

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 6   PPPSPAVAKTEIALSGKSPLLAATFAYWDNILGPRVRHIWAPKTEQVLLSDGEITFLANH 65
           PP  P+V   E  + G   +L+ + A W+ +   +  ++WA  +   + S    T +  H
Sbjct: 398 PPSLPSVPLLESLVMGPQGVLSESKALWETM--GQKENLWASDSPDPVHSTPPTTLMEPH 455

Query: 66  TLN-GEILRNAES 77
            +N GE L  +E+
Sbjct: 456 RINPGECLATSEA 468


>gi|94536860 hypothetical protein LOC138724 isoform B [Homo sapiens]
          Length = 1044

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 6   PPPSPAVAKTEIALSGKSPLLAATFAYWDNILGPRVRHIWAPKTEQVLLSDGEITFLANH 65
           PP  P+V   E  + G   +L+ + A W+ +   +  ++WA  +   + S    T +  H
Sbjct: 436 PPSLPSVPLLESLVMGPQGVLSESKALWETM--GQKENLWASDSPDPVHSTPPTTLMEPH 493

Query: 66  TLN-GEILRNAES 77
            +N GE L  +E+
Sbjct: 494 RINPGECLATSEA 506


>gi|94681096 hypothetical protein LOC138724 isoform A [Homo sapiens]
          Length = 1079

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 6   PPPSPAVAKTEIALSGKSPLLAATFAYWDNILGPRVRHIWAPKTEQVLLSDGEITFLANH 65
           PP  P+V   E  + G   +L+ + A W+ +   +  ++WA  +   + S    T +  H
Sbjct: 471 PPSLPSVPLLESLVMGPQGVLSESKALWETM--GQKENLWASDSPDPVHSTPPTTLMEPH 528

Query: 66  TLN-GEILRNAES 77
            +N GE L  +E+
Sbjct: 529 RINPGECLATSEA 541


>gi|110224479 prosaposin isoform c preproprotein [Homo sapiens]
          Length = 526

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 143 RIWMHKERQ-ENVQKIILEGTERMEDQGQSIIP--MLTGEVIPVMELLSSMKSHSVPEEI 199
           ++ MH ++Q + +  ++    E  E   Q+++P  + +  VIP +EL+  +K H VP + 
Sbjct: 254 QMMMHMDQQPKEICALVGFCDEVKEMPMQTLVPAKVASKNVIPALELVEPIKKHEVPAKS 313

Query: 200 DI 201
           D+
Sbjct: 314 DV 315


>gi|110735439 Werner syndrome protein [Homo sapiens]
          Length = 1432

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 6/46 (13%)

Query: 120  ELSFYLPLHRVCVDRLTHIIRKGRIWMHKERQENVQKIILEGTERM 165
            E+S Y    ++C      + +KGR W+HK   E+ Q +IL+  E +
Sbjct: 1030 EVSRYNKFMKICA-----LTKKGRNWLHKANTES-QSLILQANEEL 1069


>gi|169218196 PREDICTED: similar to Werner syndrome ATP-dependent
           helicase, partial [Homo sapiens]
          Length = 1140

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 6/46 (13%)

Query: 120 ELSFYLPLHRVCVDRLTHIIRKGRIWMHKERQENVQKIILEGTERM 165
           E+S Y    ++C      + +KGR W+HK   E+ Q +IL+  E +
Sbjct: 738 EVSRYNKFMKICA-----LTKKGRNWLHKANTES-QSLILQANEEL 777


>gi|11386147 prosaposin isoform a preproprotein [Homo sapiens]
          Length = 524

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 2/34 (5%)

Query: 170 QSIIP--MLTGEVIPVMELLSSMKSHSVPEEIDI 201
           Q+++P  + +  VIP +EL+  +K H VP + D+
Sbjct: 280 QTLVPAKVASKNVIPALELVEPIKKHEVPAKSDV 313


>gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo
            sapiens]
          Length = 2134

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 9/71 (12%)

Query: 44   IWAPKTEQVLLSDGEITFL-ANHTLNGEILRNAES-GAIDVKFFVLSEKGVIIV------ 95
            I A + + ++L DG++T + +  +   E+  NA S   + +   +  + G+I++      
Sbjct: 1376 IVAFQDQNIVLQDGKVTAVKSTESKKCELNANAYSIHTVGLYLILKFQNGIIVIWDKNTR 1435

Query: 96   -SLIFDGNWNG 105
             S+I D NWNG
Sbjct: 1436 LSVILDPNWNG 1446


>gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo
            sapiens]
          Length = 2134

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 9/71 (12%)

Query: 44   IWAPKTEQVLLSDGEITFL-ANHTLNGEILRNAES-GAIDVKFFVLSEKGVIIV------ 95
            I A + + ++L DG++T + +  +   E+  NA S   + +   +  + G+I++      
Sbjct: 1376 IVAFQDQNIVLQDGKVTAVKSTESKKCELNANAYSIHTVGLYLILKFQNGIIVIWDKNTR 1435

Query: 96   -SLIFDGNWNG 105
             S+I D NWNG
Sbjct: 1436 LSVILDPNWNG 1446


>gi|75677345 transmembrane protein 98 [Homo sapiens]
          Length = 226

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 9/30 (30%), Positives = 21/30 (70%)

Query: 182 PVMELLSSMKSHSVPEEIDIADTVLNDDDI 211
           P+++L+ +M++ S P E+++ D V+ +  I
Sbjct: 45  PIVDLIGAMETQSEPSELELDDVVITNPHI 74


>gi|75677343 transmembrane protein 98 [Homo sapiens]
          Length = 226

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 9/30 (30%), Positives = 21/30 (70%)

Query: 182 PVMELLSSMKSHSVPEEIDIADTVLNDDDI 211
           P+++L+ +M++ S P E+++ D V+ +  I
Sbjct: 45  PIVDLIGAMETQSEPSELELDDVVITNPHI 74


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.138    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,532,102
Number of Sequences: 37866
Number of extensions: 353101
Number of successful extensions: 810
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 806
Number of HSP's gapped (non-prelim): 17
length of query: 222
length of database: 18,247,518
effective HSP length: 98
effective length of query: 124
effective length of database: 14,536,650
effective search space: 1802544600
effective search space used: 1802544600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.