Search of human proteins with 239758019

Search of human proteins with 239758019

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239758019 PREDICTED: hypothetical protein [Homo sapiens]
         (86 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239758019 PREDICTED: hypothetical protein [Homo sapiens]           182   5e-47
gi|239758005 PREDICTED: hypothetical protein XP_002346265 [Homo ...   160   2e-40
gi|239758003 PREDICTED: hypothetical protein XP_002346264 [Homo ...   157   1e-39
gi|239758079 PREDICTED: hypothetical protein [Homo sapiens]           154   1e-38
gi|239758025 PREDICTED: hypothetical protein [Homo sapiens]           150   2e-37
gi|239755284 PREDICTED: hypothetical protein [Homo sapiens]           119   7e-28
gi|239758117 PREDICTED: hypothetical protein [Homo sapiens]            60   5e-10
gi|239755286 PREDICTED: similar to hCG1742442 [Homo sapiens]           55   1e-08
gi|9945320 cyclin L1 [Homo sapiens]                                    29   0.70 
gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]    26   5.9  
gi|87196347 zinc finger, B-box domain containing [Homo sapiens]        26   7.7  

>gi|239758019 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 86

 Score =  182 bits (462), Expect = 5e-47
 Identities = 86/86 (100%), Positives = 86/86 (100%)

Query: 1  MESTSNGIKRNYRMESKRIIEWTRMESSNGMEWNNTRTRKQSSSYRIEWNHRMDSNGIII 60
          MESTSNGIKRNYRMESKRIIEWTRMESSNGMEWNNTRTRKQSSSYRIEWNHRMDSNGIII
Sbjct: 1  MESTSNGIKRNYRMESKRIIEWTRMESSNGMEWNNTRTRKQSSSYRIEWNHRMDSNGIII 60

Query: 61 ERNRMESSSDGNEWNHHRMEMKGVII 86
          ERNRMESSSDGNEWNHHRMEMKGVII
Sbjct: 61 ERNRMESSSDGNEWNHHRMEMKGVII 86


>gi|239758005 PREDICTED: hypothetical protein XP_002346265 [Homo
           sapiens]
          Length = 127

 Score =  160 bits (406), Expect = 2e-40
 Identities = 76/86 (88%), Positives = 80/86 (93%)

Query: 1   MESTSNGIKRNYRMESKRIIEWTRMESSNGMEWNNTRTRKQSSSYRIEWNHRMDSNGIII 60
           MESTSNG KRNYRMESKRIIEWTRMESSNGMEWNN  T+ QSSS+ IEWNHRMDSNGIII
Sbjct: 42  MESTSNGKKRNYRMESKRIIEWTRMESSNGMEWNNPWTQMQSSSHSIEWNHRMDSNGIII 101

Query: 61  ERNRMESSSDGNEWNHHRMEMKGVII 86
           ERNRME SS+GNEWNHH+MEMKGVII
Sbjct: 102 ERNRMEPSSNGNEWNHHQMEMKGVII 127



 Score = 64.7 bits (156), Expect = 2e-11
 Identities = 42/86 (48%), Positives = 52/86 (60%), Gaps = 26/86 (30%)

Query: 1  MESTSNGIKRNYRMESKRIIEWTRMESS-NGMEWNNTRTRKQSSSYRIEWNHRMDSNGII 59
          MES+SN        E   +IEW+RMESS NGMEW                NHR++SNGII
Sbjct: 1  MESSSN--------ELNAVIEWSRMESSSNGMEW----------------NHRIESNGII 36

Query: 60 IERNRMESSSDGNEWNHHRMEMKGVI 85
          IE NRMES+S+G + N +RME K +I
Sbjct: 37 IEWNRMESTSNGKKRN-YRMESKRII 61


>gi|239758003 PREDICTED: hypothetical protein XP_002346264 [Homo
           sapiens]
          Length = 135

 Score =  157 bits (398), Expect = 1e-39
 Identities = 75/86 (87%), Positives = 79/86 (91%)

Query: 1   MESTSNGIKRNYRMESKRIIEWTRMESSNGMEWNNTRTRKQSSSYRIEWNHRMDSNGIII 60
           MESTSNGIKRNYRMESKR IEWTRMESSNGMEWNN RTR QSSSYRIEWNHRMDSNGII 
Sbjct: 42  MESTSNGIKRNYRMESKRSIEWTRMESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIIT 101

Query: 61  ERNRMESSSDGNEWNHHRMEMKGVII 86
           ERNRMESSS+GNE +HH ME+ G+II
Sbjct: 102 ERNRMESSSNGNERSHHLMELHGIII 127



 Score = 53.5 bits (127), Expect = 3e-08
 Identities = 36/82 (43%), Positives = 47/82 (57%), Gaps = 24/82 (29%)

Query: 1  MESTSNGIKRNYRMESKRIIEWTRMESSNGMEWNNTRTRKQSSSYRIEWNHRMDSNGIII 60
          MES+SN        E   IIEW+RMESS+  +               EWNHR++SNGI I
Sbjct: 1  MESSSN--------ELNAIIEWSRMESSSNGK---------------EWNHRIESNGINI 37

Query: 61 ERNRMESSSDGNEWNHHRMEMK 82
          +  RMES+S+G + N +RME K
Sbjct: 38 KWTRMESTSNGIKRN-YRMESK 58


>gi|239758079 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 127

 Score =  154 bits (389), Expect = 1e-38
 Identities = 76/86 (88%), Positives = 76/86 (88%)

Query: 1   MESTSNGIKRNYRMESKRIIEWTRMESSNGMEWNNTRTRKQSSSYRIEWNHRMDSNGIII 60
           M ST NG KRNYRMESKRI E TRMESSNGMEWNN  TR QSSS  IEWNHRMDSNGIII
Sbjct: 42  MVSTPNGKKRNYRMESKRIFERTRMESSNGMEWNNPWTRMQSSSNGIEWNHRMDSNGIII 101

Query: 61  ERNRMESSSDGNEWNHHRMEMKGVII 86
           ERNRMESSSDGNEWNHHRMEMKGVII
Sbjct: 102 ERNRMESSSDGNEWNHHRMEMKGVII 127



 Score = 57.0 bits (136), Expect = 3e-09
 Identities = 37/84 (44%), Positives = 48/84 (57%), Gaps = 24/84 (28%)

Query: 1  MESTSNGIKRNYRMESKRIIEWTRMESSNGMEWNNTRTRKQSSSYRIEWNHRMDSNGIII 60
          MES+SN        E   IIEW+RMESS+  +               EWNHR++SNGIII
Sbjct: 1  MESSSN--------ELNAIIEWSRMESSSNGK---------------EWNHRIESNGIII 37

Query: 61 ERNRMESSSDGNEWNHHRMEMKGV 84
          E NRM S+ +G + N +RME K +
Sbjct: 38 EWNRMVSTPNGKKRN-YRMESKRI 60


>gi|239758025 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 121

 Score =  150 bits (379), Expect = 2e-37
 Identities = 71/74 (95%), Positives = 71/74 (95%)

Query: 1   MESTSNGIKRNYRMESKRIIEWTRMESSNGMEWNNTRTRKQSSSYRIEWNHRMDSNGIII 60
           MESTSNGIKRNYRMESKRIIEWTRMESSNGMEWNN RTR QSSSYRIEWNHRMDSNGIII
Sbjct: 42  MESTSNGIKRNYRMESKRIIEWTRMESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIII 101

Query: 61  ERNRMESSSDGNEW 74
           ERNRMESS DGNEW
Sbjct: 102 ERNRMESSLDGNEW 115



 Score = 56.6 bits (135), Expect = 4e-09
 Identities = 40/86 (46%), Positives = 49/86 (56%), Gaps = 26/86 (30%)

Query: 1  MESTSNGIKRNYRMESKRIIEWTRMESS-NGMEWNNTRTRKQSSSYRIEWNHRMDSNGII 59
          MES+SN        E   IIEW+RMESS NG EWN                HR++SNGI 
Sbjct: 1  MESSSN--------ELNAIIEWSRMESSANGKEWN----------------HRIESNGIN 36

Query: 60 IERNRMESSSDGNEWNHHRMEMKGVI 85
          IE  RMES+S+G + N +RME K +I
Sbjct: 37 IEWTRMESTSNGIKRN-YRMESKRII 61


>gi|239755284 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 62

 Score =  119 bits (297), Expect = 7e-28
 Identities = 56/62 (90%), Positives = 57/62 (91%)

Query: 25 MESSNGMEWNNTRTRKQSSSYRIEWNHRMDSNGIIIERNRMESSSDGNEWNHHRMEMKGV 84
          MESSNGMEWNN  TR QSS  RIEWNHRMDSNGIIIERNRMESSS+GNEWNHHRMEMKGV
Sbjct: 1  MESSNGMEWNNPCTRMQSSLNRIEWNHRMDSNGIIIERNRMESSSNGNEWNHHRMEMKGV 60

Query: 85 II 86
          II
Sbjct: 61 II 62



 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 17/62 (27%)

Query: 1  MESTSNGIKRNYRMESKR-IIEWTRME-SSNGMEWNNTRTRKQSSSYRIEWNHRMDSNGI 58
          M+S+ N I+ N+RM+S   IIE  RME SSNG EWN               +HRM+  G+
Sbjct: 16 MQSSLNRIEWNHRMDSNGIIIERNRMESSSNGNEWN---------------HHRMEMKGV 60

Query: 59 II 60
          II
Sbjct: 61 II 62


>gi|239758117 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 465

 Score = 59.7 bits (143), Expect = 5e-10
 Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 16/69 (23%)

Query: 19  IIEWTRME-SSNGMEWNNTRTRKQSSSYRIEWNHRMDSNGIIIERNRMESSSDGNEWNHH 77
           IIEW RME SSNG+  ++               HRM+ NG+IIE NR  SS +G EW+H 
Sbjct: 411 IIEWNRMELSSNGINRDH---------------HRMEPNGVIIEWNRKASSCNGIEWHHQ 455

Query: 78  RMEMKGVII 86
           RM+ KG+II
Sbjct: 456 RMDSKGIII 464



 Score = 46.2 bits (108), Expect = 6e-06
 Identities = 23/35 (65%), Positives = 27/35 (77%)

Query: 52  RMDSNGIIIERNRMESSSDGNEWNHHRMEMKGVII 86
           +M+ NGIIIE NRME SS+G   +HHRME  GVII
Sbjct: 404 KMEWNGIIIEWNRMELSSNGINRDHHRMEPNGVII 438


>gi|239755286 PREDICTED: similar to hCG1742442 [Homo sapiens]
          Length = 296

 Score = 55.1 bits (131), Expect = 1e-08
 Identities = 27/40 (67%), Positives = 32/40 (80%), Gaps = 3/40 (7%)

Query: 47 IEWN-HRMDSNGIIIERNRMESSSDGNEWNHHRMEMKGVI 85
          IEWN HRM+SN III+ NRMES+  G EWNHH+ME  G+I
Sbjct: 7  IEWNRHRMESNAIIIKWNRMESN--GVEWNHHQMESSGII 44



 Score = 36.2 bits (82), Expect = 0.006
 Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 5/50 (10%)

Query: 1  MESTSNGIKRNYRMESKRII-EWTRMESSNGMEWNNTRTRKQSSSYRIEW 49
          MES +      +RMES  II +W RMES NG+EWN+    +  SS  IEW
Sbjct: 1  MESNAIIEWNRHRMESNAIIIKWNRMES-NGVEWNH---HQMESSGIIEW 46



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 5  SNGIKRNY-RMESKRIIEWTRMESSNGM 31
          SNG++ N+ +MES  IIEW R+     M
Sbjct: 28 SNGVEWNHHQMESSGIIEWIRVSVQTAM 55



 Score = 26.2 bits (56), Expect = 5.9
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 13/34 (38%)

Query: 53 MDSNGIIIERNRMESSSDGNEWNHHRMEMKGVII 86
          M+SN II             EWN HRME   +II
Sbjct: 1  MESNAII-------------EWNRHRMESNAIII 21


>gi|9945320 cyclin L1 [Homo sapiens]
          Length = 526

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 8/76 (10%)

Query: 2   ESTSNGIKRNYRMESKRIIEWTRMESSNGMEWNNTRTRKQSSSYRIEWNHRMDSNGIIIE 61
           +S  NG+++    +SKR    +R   S     + TR+R +S + R  +N+R   +G    
Sbjct: 373 KSPYNGVRK----DSKR----SRNSRSASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYSS 424

Query: 62  RNRMESSSDGNEWNHH 77
           R+R  S S       H
Sbjct: 425 RSRSRSRSHSESPRRH 440


>gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]
          Length = 1462

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 6/37 (16%)

Query: 33   WNNTRTRKQSSSYRIEWNHRMDSNGIIIERNRMESSS 69
            ++  RTR +SSSYR   +HR  S      R+R  SSS
Sbjct: 1362 YSRGRTRSRSSSYRSYKSHRTSS------RSRSRSSS 1392


>gi|87196347 zinc finger, B-box domain containing [Homo sapiens]
          Length = 800

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 6/73 (8%)

Query: 6  NGIKRNYRMESKRIIEWTRMESSNG------MEWNNTRTRKQSSSYRIEWNHRMDSNGII 59
          N +K  YR   +  +E  ++E  N        E+ +TR +++      E+  +    G +
Sbjct: 16 NSVKLKYRNAQELRMEKVQLEFENQEMEKKLQEFRSTRNKEKEDRESSEYYWKSGKVGKL 75

Query: 60 IERNRMESSSDGN 72
          + ++ M S + GN
Sbjct: 76 VNQSYMMSQNKGN 88


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.124    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,922,694
Number of Sequences: 37866
Number of extensions: 91380
Number of successful extensions: 261
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 197
Number of HSP's gapped (non-prelim): 25
length of query: 86
length of database: 18,247,518
effective HSP length: 58
effective length of query: 28
effective length of database: 16,051,290
effective search space: 449436120
effective search space used: 449436120
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.