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Search of human proteins with 239757747
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757747 PREDICTED: similar to Serine/threonine-protein
kinase PRKX (Protein kinase PKX1) [Homo sapiens]
(110 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757747 PREDICTED: similar to Serine/threonine-protein kina... 221 1e-58
gi|239746767 PREDICTED: hypothetical protein [Homo sapiens] 106 5e-24
gi|153251840 zinc finger protein 839 [Homo sapiens] 87 2e-18
gi|239754866 PREDICTED: hypothetical protein XP_002346136 [Homo ... 27 2.7
gi|239753832 PREDICTED: hypothetical protein XP_002345793 [Homo ... 27 2.7
gi|239749405 PREDICTED: hypothetical protein XP_002347012 [Homo ... 27 2.7
gi|239748395 PREDICTED: hypothetical protein XP_002346654 [Homo ... 27 2.7
gi|239743540 PREDICTED: hypothetical protein XP_002342872 [Homo ... 27 2.7
gi|239742323 PREDICTED: hypothetical protein XP_002342491 [Homo ... 27 2.7
gi|30025026 osteopetrosis associated transmembrane protein 1 [Ho... 27 4.6
gi|122937239 zinc finger CCCH-type domain containing 5 [Homo sap... 27 4.6
gi|116268109 nucleotide-binding oligomerization domains 27 [Homo... 27 4.6
gi|17017976 wingless-type MMTV integration site family, member 9... 26 6.0
gi|62952502 cytochrome P450, family 26, subfamily C, polypeptide... 26 6.0
>gi|239757747 PREDICTED: similar to Serine/threonine-protein kinase
PRKX (Protein kinase PKX1) [Homo sapiens]
Length = 110
Score = 221 bits (563), Expect = 1e-58
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MVLSEKANGSTLRGCTEERTLSLTFPGLSVPAAPREGGARSCLVRESARSGLQGYRVESP 60
MVLSEKANGSTLRGCTEERTLSLTFPGLSVPAAPREGGARSCLVRESARSGLQGYRVESP
Sbjct: 1 MVLSEKANGSTLRGCTEERTLSLTFPGLSVPAAPREGGARSCLVRESARSGLQGYRVESP 60
Query: 61 TIFFFSIFRKTLTSWRECKEGNACLYTVGELSPLQLSLQPALATSFPTLS 110
TIFFFSIFRKTLTSWRECKEGNACLYTVGELSPLQLSLQPALATSFPTLS
Sbjct: 61 TIFFFSIFRKTLTSWRECKEGNACLYTVGELSPLQLSLQPALATSFPTLS 110
>gi|239746767 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 106 bits (264), Expect = 5e-24
Identities = 54/59 (91%), Positives = 54/59 (91%)
Query: 1 MVLSEKANGSTLRGCTEERTLSLTFPGLSVPAAPREGGARSCLVRESARSGLQGYRVES 59
MVLSEKANGSTLRGCTEERTLSLTFPGLSVPAAPREGGARSCLVRESAR GLQ R S
Sbjct: 102 MVLSEKANGSTLRGCTEERTLSLTFPGLSVPAAPREGGARSCLVRESARGGLQAGRCMS 160
>gi|153251840 zinc finger protein 839 [Homo sapiens]
Length = 927
Score = 87.4 bits (215), Expect = 2e-18
Identities = 45/53 (84%), Positives = 47/53 (88%)
Query: 1 MVLSEKANGSTLRGCTEERTLSLTFPGLSVPAAPREGGARSCLVRESARSGLQ 53
MVLSEKA+GSTLRGCTEERTLSLT GLS+PA P EGGARSCLV ESAR GLQ
Sbjct: 345 MVLSEKASGSTLRGCTEERTLSLTSLGLSMPADPCEGGARSCLVTESARGGLQ 397
>gi|239754866 PREDICTED: hypothetical protein XP_002346136 [Homo
sapiens]
Length = 65
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 11 TLRGCTEERTLSLTFPGLSVPAAPREGGARSCLVRESAR 49
++R + R FP S P A R GGA C +R S R
Sbjct: 14 SVRAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGR 52
>gi|239753832 PREDICTED: hypothetical protein XP_002345793 [Homo
sapiens]
Length = 203
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 13 RGC--TEERTLSLTFPGLSVPAAPREGGARSCLVRESARSGL 52
RGC TEE L + P L V EGG + R +GL
Sbjct: 59 RGCELTEENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGL 100
>gi|239749405 PREDICTED: hypothetical protein XP_002347012 [Homo
sapiens]
Length = 65
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 11 TLRGCTEERTLSLTFPGLSVPAAPREGGARSCLVRESAR 49
++R + R FP S P A R GGA C +R S R
Sbjct: 14 SVRAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGR 52
>gi|239748395 PREDICTED: hypothetical protein XP_002346654 [Homo
sapiens]
Length = 203
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 13 RGC--TEERTLSLTFPGLSVPAAPREGGARSCLVRESARSGL 52
RGC TEE L + P L V EGG + R +GL
Sbjct: 59 RGCELTEENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGL 100
>gi|239743540 PREDICTED: hypothetical protein XP_002342872 [Homo
sapiens]
Length = 65
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 11 TLRGCTEERTLSLTFPGLSVPAAPREGGARSCLVRESAR 49
++R + R FP S P A R GGA C +R S R
Sbjct: 14 SVRAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGR 52
>gi|239742323 PREDICTED: hypothetical protein XP_002342491 [Homo
sapiens]
Length = 203
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 13 RGC--TEERTLSLTFPGLSVPAAPREGGARSCLVRESARSGL 52
RGC TEE L + P L V EGG + R +GL
Sbjct: 59 RGCELTEENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGL 100
>gi|30025026 osteopetrosis associated transmembrane protein 1 [Homo
sapiens]
Length = 334
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 35 REGGARSCLVRESARSGLQGYRVESPTIFFFSIFRKTLTSWRECKEGNA 83
+E +CL S + + T++F ++F TLT + +GNA
Sbjct: 167 QEANCANCLTNNSEE-------LSNSTVYFLNLFNHTLTCFEHNLQGNA 208
>gi|122937239 zinc finger CCCH-type domain containing 5 [Homo
sapiens]
Length = 886
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 78 CKEGNACLYTVGELSPLQLSLQPALATSFPT 108
C G C + E PL LQP+ A S PT
Sbjct: 384 CPRGPFCAFAHVEQPPLSDDLQPSSAVSSPT 414
>gi|116268109 nucleotide-binding oligomerization domains 27 [Homo
sapiens]
Length = 1866
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 26 PGLSVPAAPREGGARSCLVRESA---RSGLQGYRVESPTIFFFS 66
PG V A R G +CL E+A G G RVE FFS
Sbjct: 338 PGCRVMATSRPGKLPACLPAEAAMVHMLGFDGPRVEEYVNHFFS 381
>gi|17017976 wingless-type MMTV integration site family, member 9B
precursor [Homo sapiens]
Length = 357
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 2 VLSEKANGSTLRGCTEERTLSLTFPGLSVPAAPREGGA 39
+L+ A ++ G T L+ FPGL AAP +GGA
Sbjct: 14 LLALPAAAASYFGLTGREVLT-PFPGLGTAAAPAQGGA 50
>gi|62952502 cytochrome P450, family 26, subfamily C, polypeptide 1
[Homo sapiens]
Length = 522
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 34 PREGGARSCLVRESARSGLQGYRVE 58
P GGARSCL +E A++ LQ VE
Sbjct: 451 PFGGGARSCLGQELAQAVLQLLAVE 475
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.132 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,325,943
Number of Sequences: 37866
Number of extensions: 162830
Number of successful extensions: 442
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 432
Number of HSP's gapped (non-prelim): 15
length of query: 110
length of database: 18,247,518
effective HSP length: 80
effective length of query: 30
effective length of database: 15,218,238
effective search space: 456547140
effective search space used: 456547140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.