Search of human proteins with 11968051

Search of human proteins with 11968051

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|11968051 nuclear prelamin A recognition factor-like [Homo
sapiens]
         (476 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|11968051 nuclear prelamin A recognition factor-like [Homo sap...   968   0.0  
gi|6912524 nuclear prelamin A recognition factor isoform a [Homo...   434   e-122
gi|14165461 nuclear prelamin A recognition factor isoform b [Hom...   412   e-115
gi|84452151 nuclear prelamin A recognition factor isoform c [Hom...   408   e-114
gi|134284357 nuclear prelamin A recognition factor isoform d [Ho...   393   e-109
gi|224451082 cytospin A [Homo sapiens]                                 31   2.2  
gi|224451080 cytospin A [Homo sapiens]                                 31   2.2  
gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B ...    31   2.2  
gi|223890225 POU class 6 homeobox 1 [Homo sapiens]                     30   4.8  
gi|4826980 nuclear receptor subfamily 1, group H, member 4 [Homo...    29   8.2  
gi|45439370 TAO kinase 1 [Homo sapiens]                                29   8.2  
gi|215820652 StAR-related lipid transfer (START) domain containi...    29   8.2  
gi|215820650 StAR-related lipid transfer (START) domain containi...    29   8.2  
gi|31543659 StAR-related lipid transfer (START) domain containin...    29   8.2  
gi|41393579 PDZ domain protein GIPC2 [Homo sapiens]                    29   8.2  

>gi|11968051 nuclear prelamin A recognition factor-like [Homo
           sapiens]
          Length = 476

 Score =  968 bits (2502), Expect = 0.0
 Identities = 476/476 (100%), Positives = 476/476 (100%)

Query: 1   MASPFSGALQLTDLDDFIGPSQECIKPVKVEKRAGSGVAKIRIEDDGSYFQINQDGGTRR 60
           MASPFSGALQLTDLDDFIGPSQECIKPVKVEKRAGSGVAKIRIEDDGSYFQINQDGGTRR
Sbjct: 1   MASPFSGALQLTDLDDFIGPSQECIKPVKVEKRAGSGVAKIRIEDDGSYFQINQDGGTRR 60

Query: 61  LEKAKVSLNDCLACSGCITSAETVLITQQSHEELKKVLDANKMAAPSQQRLVVVSVSPQS 120
           LEKAKVSLNDCLACSGCITSAETVLITQQSHEELKKVLDANKMAAPSQQRLVVVSVSPQS
Sbjct: 61  LEKAKVSLNDCLACSGCITSAETVLITQQSHEELKKVLDANKMAAPSQQRLVVVSVSPQS 120

Query: 121 RASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREFVRRFRGQADCR 180
           RASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREFVRRFRGQADCR
Sbjct: 121 RASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREFVRRFRGQADCR 180

Query: 181 QALPLLASACPGWICYAEKTHGSFILPHISTARSPQQVMGSLVKDFFAQQQHLTPDKIYH 240
           QALPLLASACPGWICYAEKTHGSFILPHISTARSPQQVMGSLVKDFFAQQQHLTPDKIYH
Sbjct: 181 QALPLLASACPGWICYAEKTHGSFILPHISTARSPQQVMGSLVKDFFAQQQHLTPDKIYH 240

Query: 241 VTVMPCYDKKLEASRPDFFNQEHQTRDVDCVLTTGEVFRLLEEEGVSLPDLEPAPLDSLC 300
           VTVMPCYDKKLEASRPDFFNQEHQTRDVDCVLTTGEVFRLLEEEGVSLPDLEPAPLDSLC
Sbjct: 241 VTVMPCYDKKLEASRPDFFNQEHQTRDVDCVLTTGEVFRLLEEEGVSLPDLEPAPLDSLC 300

Query: 301 SGASAEEPTSHRGGGSGGYLEHVFRHAARELFGIHVAEVTYKPLRNKDFQEVTLEKEGQV 360
           SGASAEEPTSHRGGGSGGYLEHVFRHAARELFGIHVAEVTYKPLRNKDFQEVTLEKEGQV
Sbjct: 301 SGASAEEPTSHRGGGSGGYLEHVFRHAARELFGIHVAEVTYKPLRNKDFQEVTLEKEGQV 360

Query: 361 LLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEVMACPSGCLNGGGQLQAPDRPSRELLQHV 420
           LLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEVMACPSGCLNGGGQLQAPDRPSRELLQHV
Sbjct: 361 LLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEVMACPSGCLNGGGQLQAPDRPSRELLQHV 420

Query: 421 ERLYGMVRAEAPEDAPGVQELYTHWLQGTDSECAGRLLHTQYHAVEKASTGLGIRW 476
           ERLYGMVRAEAPEDAPGVQELYTHWLQGTDSECAGRLLHTQYHAVEKASTGLGIRW
Sbjct: 421 ERLYGMVRAEAPEDAPGVQELYTHWLQGTDSECAGRLLHTQYHAVEKASTGLGIRW 476


>gi|6912524 nuclear prelamin A recognition factor isoform a [Homo
           sapiens]
          Length = 456

 Score =  434 bits (1116), Expect = e-122
 Identities = 219/457 (47%), Positives = 307/457 (67%), Gaps = 11/457 (2%)

Query: 22  QECIKPVKVEKRAG-SGVAKIRIEDDGSYFQINQDGGTRRLEKAKVSLNDCLACSGCITS 80
           +EC K  K + +   S  A    +++G      + G   +L  AK+ L+DCLAC  C+T+
Sbjct: 9   KECSKKTKTDDQENVSADAPSPAQENG------EKGEFHKLADAKIFLSDCLACDSCMTA 62

Query: 81  AETVLITQQSHEELKKVLDANKMAAPSQQRLVVVSVSPQSRASLAARFQLNPTDTARKLT 140
            E V ++QQ+ ++  +VL+ NK    S+ +++VVSV PQS    AA+F L+ TD +R+L 
Sbjct: 63  EEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLC 122

Query: 141 SFFKKIGVHFVFDTAFSRHFSLLESQREFVRRFRGQADCRQALPLLASACPGWICYAEKT 200
            F K +GVH+VFDT  +  FS+LESQ+EFVRR+R  ++  + LP+L SACPGW+ YAE+ 
Sbjct: 123 GFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYAERV 182

Query: 201 HGSFILPHISTARSPQQVMGSLVKDFFAQQQHLTPDKIYHVTVMPCYDKKLEASRPDFFN 260
            G  I  H+ TA+SPQQVMGSLVKD+FA+QQ+L+P+KI+HV V PCYDKKLEA +     
Sbjct: 183 LGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESLPP 242

Query: 261 QEHQTRDVDCVLTTGEVFRLLEEEGVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYL 320
             H +R  DCVLT+GE+ +++E+  +S+ D   A +D+L      ++ T H G  S G+L
Sbjct: 243 ALHGSRGADCVLTSGEIAQIMEQGDLSVRD---AAVDTLFGDLKEDKVTRHDGASSDGHL 299

Query: 321 EHVFRHAARELFGIHVAEVTYKPLRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRL 380
            H+FRHAA+ELF   V EVTY+ LRNKDFQEVTLEK G+V+L FA AYGFRNIQN++ +L
Sbjct: 300 AHIFRHAAKELFNEDVEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKL 359

Query: 381 KRGRCPYHYVEVMACPSGCLNGGGQLQAPD-RPSRELLQHVERLYGMVRAEAPEDAPGVQ 439
           K+G+ P+H+VEV+AC  GCLNG GQ Q PD    + LL+ +E +Y  +    PE +  VQ
Sbjct: 360 KKGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQ 419

Query: 440 ELYTHWLQGTDSECAGRLLHTQYHAVEKASTGLGIRW 476
           ELY  WL+G +S  A  +LHT Y + E+ +  L I+W
Sbjct: 420 ELYQEWLEGINSPKAREVLHTTYQSQERGTHSLDIKW 456


>gi|14165461 nuclear prelamin A recognition factor isoform b [Homo
           sapiens]
          Length = 502

 Score =  412 bits (1059), Expect = e-115
 Identities = 219/503 (43%), Positives = 307/503 (61%), Gaps = 57/503 (11%)

Query: 22  QECIKPVKVEKRAG-SGVAKIRIEDDGSYFQINQDGGTRRLEKAKVSLNDCLACSGCITS 80
           +EC K  K + +   S  A    +++G      + G   +L  AK+ L+DCLAC  C+T+
Sbjct: 9   KECSKKTKTDDQENVSADAPSPAQENG------EKGEFHKLADAKIFLSDCLACDSCMTA 62

Query: 81  AETVLITQQSHEELKKVLDANKMAAPSQQRLVVVSVSPQSRASLAARFQLNPTDTARKLT 140
            E V ++QQ+ ++  +VL+ NK    S+ +++VVSV PQS    AA+F L+ TD +R+L 
Sbjct: 63  EEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLC 122

Query: 141 SFFKKIGVHFVFDTAFSRHFSLLESQREFVRRFRGQADCRQALPLLASACPGWICYAEKT 200
            F K +GVH+VFDT  +  FS+LESQ+EFVRR+R  ++  + LP+L SACPGW+ YAE+ 
Sbjct: 123 GFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYAERV 182

Query: 201 HGSFILPHISTARSPQQVMGSLVKDFFAQQQHLTPDKIYHVTVMPCYDKKLEASRPDFFN 260
            G  I  H+ TA+SPQQVMGSLVKD+FA+QQ+L+P+KI+HV V PCYDKKLEA +     
Sbjct: 183 LGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESLPP 242

Query: 261 QEHQTRDVDCVLTT---------------------------------------------- 274
             H +R  DCVLT+                                              
Sbjct: 243 ALHGSRGADCVLTSEISQAWWCTPVITATREAAARESLEPGRQRLQRDKIAPLDSSLGGG 302

Query: 275 GEVFRLLEEEGVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRHAARELFGI 334
           GE+ +++E+  +S+ D   A +D+L      ++ T H G  S G+L H+FRHAA+ELF  
Sbjct: 303 GEIAQIMEQGDLSVRD---AAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNE 359

Query: 335 HVAEVTYKPLRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEVMA 394
            V EVTY+ LRNKDFQEVTLEK G+V+L FA AYGFRNIQN++ +LK+G+ P+H+VEV+A
Sbjct: 360 DVEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLA 419

Query: 395 CPSGCLNGGGQLQAPD-RPSRELLQHVERLYGMVRAEAPEDAPGVQELYTHWLQGTDSEC 453
           C  GCLNG GQ Q PD    + LL+ +E +Y  +    PE +  VQELY  WL+G +S  
Sbjct: 420 CAGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQELYQEWLEGINSPK 479

Query: 454 AGRLLHTQYHAVEKASTGLGIRW 476
           A  +LHT Y + E+ +  L I+W
Sbjct: 480 AREVLHTTYQSQERGTHSLDIKW 502


>gi|84452151 nuclear prelamin A recognition factor isoform c [Homo
           sapiens]
          Length = 397

 Score =  408 bits (1049), Expect = e-114
 Identities = 201/400 (50%), Positives = 279/400 (69%), Gaps = 4/400 (1%)

Query: 78  ITSAETVLITQQSHEELKKVLDANKMAAPSQQRLVVVSVSPQSRASLAARFQLNPTDTAR 137
           +T+ E V ++QQ+ ++  +VL+ NK    S+ +++VVSV PQS    AA+F L+ TD +R
Sbjct: 1   MTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASR 60

Query: 138 KLTSFFKKIGVHFVFDTAFSRHFSLLESQREFVRRFRGQADCRQALPLLASACPGWICYA 197
           +L  F K +GVH+VFDT  +  FS+LESQ+EFVRR+R  ++  + LP+L SACPGW+ YA
Sbjct: 61  RLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYA 120

Query: 198 EKTHGSFILPHISTARSPQQVMGSLVKDFFAQQQHLTPDKIYHVTVMPCYDKKLEASRPD 257
           E+  G  I  H+ TA+SPQQVMGSLVKD+FA+QQ+L+P+KI+HV V PCYDKKLEA +  
Sbjct: 121 ERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQES 180

Query: 258 FFNQEHQTRDVDCVLTTGEVFRLLEEEGVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSG 317
                H +R  DCVLT+GE+ +++E+  +S+ D   A +D+L      ++ T H G  S 
Sbjct: 181 LPPALHGSRGADCVLTSGEIAQIMEQGDLSVRD---AAVDTLFGDLKEDKVTRHDGASSD 237

Query: 318 GYLEHVFRHAARELFGIHVAEVTYKPLRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLV 377
           G+L H+FRHAA+ELF   V EVTY+ LRNKDFQEVTLEK G+V+L FA AYGFRNIQN++
Sbjct: 238 GHLAHIFRHAAKELFNEDVEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMI 297

Query: 378 QRLKRGRCPYHYVEVMACPSGCLNGGGQLQAPD-RPSRELLQHVERLYGMVRAEAPEDAP 436
            +LK+G+ P+H+VEV+AC  GCLNG GQ Q PD    + LL+ +E +Y  +    PE + 
Sbjct: 298 LKLKKGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSA 357

Query: 437 GVQELYTHWLQGTDSECAGRLLHTQYHAVEKASTGLGIRW 476
            VQELY  WL+G +S  A  +LHT Y + E+ +  L I+W
Sbjct: 358 HVQELYQEWLEGINSPKAREVLHTTYQSQERGTHSLDIKW 397


>gi|134284357 nuclear prelamin A recognition factor isoform d [Homo
           sapiens]
          Length = 408

 Score =  393 bits (1009), Expect = e-109
 Identities = 192/371 (51%), Positives = 261/371 (70%), Gaps = 4/371 (1%)

Query: 107 SQQRLVVVSVSPQSRASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQ 166
           S+ +++VVSV PQS    AA+F L+ TD +R+L  F K +GVH+VFDT  +  FS+LESQ
Sbjct: 41  SKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQ 100

Query: 167 REFVRRFRGQADCRQALPLLASACPGWICYAEKTHGSFILPHISTARSPQQVMGSLVKDF 226
           +EFVRR+R  ++  + LP+L SACPGW+ YAE+  G  I  H+ TA+SPQQVMGSLVKD+
Sbjct: 101 KEFVRRYRQHSEEERTLPMLTSACPGWVRYAERVLGRPITAHLCTAKSPQQVMGSLVKDY 160

Query: 227 FAQQQHLTPDKIYHVTVMPCYDKKLEASRPDFFNQEHQTRDVDCVLTTGEVFRLLEEEGV 286
           FA+QQ+L+P+KI+HV V PCYDKKLEA +       H +R  DCVLT+GE+ +++E+  +
Sbjct: 161 FARQQNLSPEKIFHVIVAPCYDKKLEALQESLPPALHGSRGADCVLTSGEIAQIMEQGDL 220

Query: 287 SLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRHAARELFGIHVAEVTYKPLRN 346
           S+ D   A +D+L      ++ T H G  S G+L H+FRHAA+ELF   V EVTY+ LRN
Sbjct: 221 SVRD---AAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNEDVEEVTYRALRN 277

Query: 347 KDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEVMACPSGCLNGGGQL 406
           KDFQEVTLEK G+V+L FA AYGFRNIQN++ +LK+G+ P+H+VEV+AC  GCLNG GQ 
Sbjct: 278 KDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRGQA 337

Query: 407 QAPD-RPSRELLQHVERLYGMVRAEAPEDAPGVQELYTHWLQGTDSECAGRLLHTQYHAV 465
           Q PD    + LL+ +E +Y  +    PE +  VQELY  WL+G +S  A  +LHT Y + 
Sbjct: 338 QTPDGHADKALLRQMEGIYADIPVRRPESSAHVQELYQEWLEGINSPKAREVLHTTYQSQ 397

Query: 466 EKASTGLGIRW 476
           E+ +  L I+W
Sbjct: 398 ERGTHSLDIKW 408


>gi|224451082 cytospin A [Homo sapiens]
          Length = 1117

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 80  SAETVLITQQSHEELKKVLDANKMAAPSQQRLVVVSVSPQSRASLAARFQLNPTDTAR 137
           SA+T+ ++++S EE+K+ + A + A+P+   + + + SPQ   S +    + PT  +R
Sbjct: 937 SAKTLSVSRRSSEEVKRDISAQEGASPA-SLMAMGTTSPQLSLSSSPTASVTPTTRSR 993


>gi|224451080 cytospin A [Homo sapiens]
          Length = 1117

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 80  SAETVLITQQSHEELKKVLDANKMAAPSQQRLVVVSVSPQSRASLAARFQLNPTDTAR 137
           SA+T+ ++++S EE+K+ + A + A+P+   + + + SPQ   S +    + PT  +R
Sbjct: 937 SAKTLSVSRRSSEEVKRDISAQEGASPA-SLMAMGTTSPQLSLSSSPTASVTPTTRSR 993


>gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B
            subunit [Homo sapiens]
          Length = 2339

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 10/74 (13%)

Query: 300  CSGASAEEPTSHRGGGSGGYLE----------HVFRHAARELFGIHVAEVTYKPLRNKDF 349
            C+GA  E    HRGG   G  E          H  RH A+        E T K    K+ 
Sbjct: 947  CAGAKGERRARHRGGPRAGPREAESGEEPARRHRARHKAQPAHEAVEKETTEKEATEKEA 1006

Query: 350  QEVTLEKEGQVLLH 363
            + V  +KE ++  H
Sbjct: 1007 EIVEADKEKELRNH 1020


>gi|223890225 POU class 6 homeobox 1 [Homo sapiens]
          Length = 301

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 82  ETVLITQQSHEELKKVLDANKMAAPSQQRLVVVSVSPQSRASLAARFQLNPTDTARKLTS 141
           E  L  Q+  + L + +       PS++R    S +PQ+  +L A F+ NP  T +++T 
Sbjct: 211 EAELRNQEGQQNLMEFVGGE----PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITE 266

Query: 142 FFKKI 146
             K++
Sbjct: 267 IAKEL 271


>gi|4826980 nuclear receptor subfamily 1, group H, member 4 [Homo
           sapiens]
          Length = 472

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 7/64 (10%)

Query: 204 FILPHISTARSPQQVMGSLVKDFFAQQQH---LTPDKIYHVTVMPCYDKKLEASRPDFFN 260
           FI+   +  R PQ++   ++K+ F+ +++   LT     HV V+  + KKL    P F  
Sbjct: 255 FIMDSYNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKL----PGFQT 310

Query: 261 QEHQ 264
            +H+
Sbjct: 311 LDHE 314


>gi|45439370 TAO kinase 1 [Homo sapiens]
          Length = 1001

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 85  LITQQSHEELKKVLDANKMAAPSQQRLVVVSVSPQSRASLAARFQLNPT--DTARKLTSF 142
           LI  Q   EL   L+ NK      +R  V+ V  Q ++  +   Q+     DT +  T  
Sbjct: 677 LIRLQHQTELTNQLEYNKRRERELRRKHVMEVRQQPKSLKSKELQIKKQFQDTCKIQTRQ 736

Query: 143 FKKIGVHFVFDTAFSRHFSLLESQRE 168
           +K +  H +  T  S H ++L+  +E
Sbjct: 737 YKALRNHLLETTPKSEHKAVLKRLKE 762


>gi|215820652 StAR-related lipid transfer (START) domain containing
           8 isoform b [Homo sapiens]
          Length = 1023

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 287 SLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRH 326
           +LP+L PA  + +  GA AE+      GGS  +L+ + +H
Sbjct: 277 NLPELYPA--EPVMVGAEAEDEDDEESGGSYAHLDDILQH 314


>gi|215820650 StAR-related lipid transfer (START) domain containing
           8 isoform a [Homo sapiens]
          Length = 1103

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 287 SLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRH 326
           +LP+L PA  + +  GA AE+      GGS  +L+ + +H
Sbjct: 357 NLPELYPA--EPVMVGAEAEDEDDEESGGSYAHLDDILQH 394


>gi|31543659 StAR-related lipid transfer (START) domain containing 8
           isoform b [Homo sapiens]
          Length = 1023

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 287 SLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRH 326
           +LP+L PA  + +  GA AE+      GGS  +L+ + +H
Sbjct: 277 NLPELYPA--EPVMVGAEAEDEDDEESGGSYAHLDDILQH 314


>gi|41393579 PDZ domain protein GIPC2 [Homo sapiens]
          Length = 315

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 396 PSGCLNGGGQLQAPDRPSRELLQHVERLYGMVRAEAPEDAPGVQELY 442
           P+G   GGG L A   P+R L+ H +  +G       E    +QELY
Sbjct: 24  PTGA--GGGSLSASRAPARRLVFHAQLAHGSATGRV-EGFSSIQELY 67


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,844,132
Number of Sequences: 37866
Number of extensions: 874289
Number of successful extensions: 2304
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2289
Number of HSP's gapped (non-prelim): 16
length of query: 476
length of database: 18,247,518
effective HSP length: 106
effective length of query: 370
effective length of database: 14,233,722
effective search space: 5266477140
effective search space used: 5266477140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.