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Search of human proteins with 239756617
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756617 PREDICTED: hypothetical protein [Homo sapiens]
(63 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756617 PREDICTED: hypothetical protein [Homo sapiens] 131 1e-31
gi|239751105 PREDICTED: hypothetical protein XP_002347705 [Homo ... 128 1e-30
gi|239745592 PREDICTED: hypothetical protein XP_002344154 [Homo ... 128 1e-30
gi|239756489 PREDICTED: hypothetical protein [Homo sapiens] 125 6e-30
gi|239745465 PREDICTED: hypothetical protein XP_002343498 [Homo ... 107 2e-24
gi|112363080 microtubule associated serine/threonine kinase 2 [H... 30 0.32
gi|21314764 Fc receptor-like 3 precursor [Homo sapiens] 27 3.5
gi|125988395 jumonji domain containing 6 isoform 1 [Homo sapiens] 27 3.5
gi|125988389 jumonji domain containing 6 isoform 2 [Homo sapiens] 27 3.5
gi|42734375 ankyrin repeat and sterile alpha motif domain contai... 27 3.5
gi|46399200 testis-specific bromodomain protein [Homo sapiens] 27 4.6
gi|46399198 testis-specific bromodomain protein [Homo sapiens] 27 4.6
gi|21361101 MAP kinase-interacting serine/threonine kinase 1 iso... 26 7.8
>gi|239756617 PREDICTED: hypothetical protein [Homo sapiens]
Length = 63
Score = 131 bits (330), Expect = 1e-31
Identities = 63/63 (100%), Positives = 63/63 (100%)
Query: 1 MADLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYC 60
MADLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYC
Sbjct: 1 MADLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYC 60
Query: 61 TLP 63
TLP
Sbjct: 61 TLP 63
>gi|239751105 PREDICTED: hypothetical protein XP_002347705 [Homo
sapiens]
Length = 138
Score = 128 bits (321), Expect = 1e-30
Identities = 61/61 (100%), Positives = 61/61 (100%)
Query: 3 DLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTL 62
DLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTL
Sbjct: 78 DLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTL 137
Query: 63 P 63
P
Sbjct: 138 P 138
>gi|239745592 PREDICTED: hypothetical protein XP_002344154 [Homo
sapiens]
Length = 138
Score = 128 bits (321), Expect = 1e-30
Identities = 61/61 (100%), Positives = 61/61 (100%)
Query: 3 DLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTL 62
DLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTL
Sbjct: 78 DLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTL 137
Query: 63 P 63
P
Sbjct: 138 P 138
>gi|239756489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 77
Score = 125 bits (315), Expect = 6e-30
Identities = 60/61 (98%), Positives = 60/61 (98%)
Query: 3 DLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTL 62
DLTNSSQLTPSEAEDCSSSD SCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTL
Sbjct: 17 DLTNSSQLTPSEAEDCSSSDFSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTL 76
Query: 63 P 63
P
Sbjct: 77 P 77
>gi|239745465 PREDICTED: hypothetical protein XP_002343498 [Homo
sapiens]
Length = 58
Score = 107 bits (267), Expect = 2e-24
Identities = 50/50 (100%), Positives = 50/50 (100%)
Query: 14 EAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTLP 63
EAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTLP
Sbjct: 9 EAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTLP 58
>gi|112363080 microtubule associated serine/threonine kinase 2 [Homo
sapiens]
Length = 1798
Score = 30.4 bits (67), Expect = 0.32
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 2 ADLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAV 57
A T S L PSE CS +S + P SQS + ++ R+ LP G + P +
Sbjct: 1051 ASATALSLLIPSEHHTCSPL-ASPMSPHSQSSNPSSRDSSPSRDFLPALGSMRPPI 1105
>gi|21314764 Fc receptor-like 3 precursor [Homo sapiens]
Length = 734
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 5 TNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINP 55
T +S +PSE ++ SSS S + P + ++ ++ E+ P Y +NP
Sbjct: 609 TGTSSHSPSECQEPSSSRPSRIDPQEPTH----SKPLAPMELEPMYSNVNP 655
>gi|125988395 jumonji domain containing 6 isoform 1 [Homo sapiens]
Length = 414
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 3 DLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTE 39
DL S+ + + D SSS SS DS SE ++G+E
Sbjct: 331 DLQESTGIASDSSSDSSSSSSSS-SSDSDSECESGSE 366
>gi|125988389 jumonji domain containing 6 isoform 2 [Homo sapiens]
Length = 403
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 3 DLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTE 39
DL S+ + + D SSS SS DS SE ++G+E
Sbjct: 331 DLQESTGIASDSSSDSSSSSSSS-SSDSDSECESGSE 366
>gi|42734375 ankyrin repeat and sterile alpha motif domain
containing 3 [Homo sapiens]
Length = 656
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 4 LTNSSQLTPSEAEDCSSSDSSCVRPDSQ 31
L S +P + ED SSSD SC P Q
Sbjct: 228 LPKSLYRSPEKYEDLSSSDESCPAPQRQ 255
>gi|46399200 testis-specific bromodomain protein [Homo sapiens]
Length = 947
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 5 TNSSQLTPSEA--------EDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINP 55
T S + PS+A E SSS SS S S+ + + S E+ P++ + P
Sbjct: 620 TKSDKTQPSKAVENVSRLSESSSSSSSSSESESSSSDLSSSDSSDSESEMFPKFTEVKP 678
>gi|46399198 testis-specific bromodomain protein [Homo sapiens]
Length = 947
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 5 TNSSQLTPSEA--------EDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINP 55
T S + PS+A E SSS SS S S+ + + S E+ P++ + P
Sbjct: 620 TKSDKTQPSKAVENVSRLSESSSSSSSSSESESSSSDLSSSDSSDSESEMFPKFTEVKP 678
>gi|21361101 MAP kinase-interacting serine/threonine kinase 1
isoform 1 [Homo sapiens]
Length = 465
Score = 25.8 bits (55), Expect = 7.8
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 8 SQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHREILPE 49
S + PS +S S P S S+ AGT I+HR++ PE
Sbjct: 175 SAMAPSGLTAAPTSLGSSDPPTSASQV-AGTTGIAHRDLKPE 215
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.307 0.122 0.351
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,528,383
Number of Sequences: 37866
Number of extensions: 83498
Number of successful extensions: 350
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 336
Number of HSP's gapped (non-prelim): 17
length of query: 63
length of database: 18,247,518
effective HSP length: 36
effective length of query: 27
effective length of database: 16,884,342
effective search space: 455877234
effective search space used: 455877234
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.