BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239756462 PREDICTED: hypothetical protein isoform 1 [Homo sapiens] (68 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239756462 PREDICTED: hypothetical protein isoform 1 [Homo sap... 146 3e-36 gi|239750990 PREDICTED: hypothetical protein XP_002347623 isofor... 146 3e-36 gi|239756460 PREDICTED: hypothetical protein isoform 2 [Homo sap... 119 7e-28 gi|239750988 PREDICTED: hypothetical protein XP_002347624 isofor... 119 7e-28 gi|239745391 PREDICTED: hypothetical protein XP_002343487 [Homo ... 69 6e-13 gi|38569493 potassium voltage-gated channel, subfamily H (eag-re... 28 1.6 gi|5730081 T-box, brain, 1 [Homo sapiens] 27 3.5 >gi|239756462 PREDICTED: hypothetical protein isoform 1 [Homo sapiens] Length = 68 Score = 146 bits (369), Expect = 3e-36 Identities = 68/68 (100%), Positives = 68/68 (100%) Query: 1 MSKERVISAAGVGALVPMEWSISADGVGRRVGHYADGAGPMEWGAEWSISADGAGRQCRW 60 MSKERVISAAGVGALVPMEWSISADGVGRRVGHYADGAGPMEWGAEWSISADGAGRQCRW Sbjct: 1 MSKERVISAAGVGALVPMEWSISADGVGRRVGHYADGAGPMEWGAEWSISADGAGRQCRW 60 Query: 61 SRVPGPME 68 SRVPGPME Sbjct: 61 SRVPGPME 68 >gi|239750990 PREDICTED: hypothetical protein XP_002347623 isoform 1 [Homo sapiens] Length = 68 Score = 146 bits (369), Expect = 3e-36 Identities = 68/68 (100%), Positives = 68/68 (100%) Query: 1 MSKERVISAAGVGALVPMEWSISADGVGRRVGHYADGAGPMEWGAEWSISADGAGRQCRW 60 MSKERVISAAGVGALVPMEWSISADGVGRRVGHYADGAGPMEWGAEWSISADGAGRQCRW Sbjct: 1 MSKERVISAAGVGALVPMEWSISADGVGRRVGHYADGAGPMEWGAEWSISADGAGRQCRW 60 Query: 61 SRVPGPME 68 SRVPGPME Sbjct: 61 SRVPGPME 68 >gi|239756460 PREDICTED: hypothetical protein isoform 2 [Homo sapiens] Length = 68 Score = 119 bits (297), Expect = 7e-28 Identities = 58/68 (85%), Positives = 58/68 (85%) Query: 1 MSKERVISAAGVGALVPMEWSISADGVGRRVGHYADGAGPMEWGAEWSISADGAGRQCRW 60 MSKERVISAAGVGALVPMEWSI G G ADGAGPMEWGAEWSISADGAGRQCRW Sbjct: 1 MSKERVISAAGVGALVPMEWSIMLMEWGAEWGISADGAGPMEWGAEWSISADGAGRQCRW 60 Query: 61 SRVPGPME 68 SRVPGPME Sbjct: 61 SRVPGPME 68 >gi|239750988 PREDICTED: hypothetical protein XP_002347624 isoform 2 [Homo sapiens] Length = 68 Score = 119 bits (297), Expect = 7e-28 Identities = 58/68 (85%), Positives = 58/68 (85%) Query: 1 MSKERVISAAGVGALVPMEWSISADGVGRRVGHYADGAGPMEWGAEWSISADGAGRQCRW 60 MSKERVISAAGVGALVPMEWSI G G ADGAGPMEWGAEWSISADGAGRQCRW Sbjct: 1 MSKERVISAAGVGALVPMEWSIMLMEWGAEWGISADGAGPMEWGAEWSISADGAGRQCRW 60 Query: 61 SRVPGPME 68 SRVPGPME Sbjct: 61 SRVPGPME 68 >gi|239745391 PREDICTED: hypothetical protein XP_002343487 [Homo sapiens] Length = 417 Score = 69.3 bits (168), Expect = 6e-13 Identities = 33/45 (73%), Positives = 33/45 (73%), Gaps = 7/45 (15%) Query: 18 MEWSISADGVGRRVGHYADGAGPMEWGAEWSISADGAGRQCRWSR 62 MEW G G ADGAGPMEWGAEWSISADGAGRQCRWSR Sbjct: 1 MEW-------GAEWGISADGAGPMEWGAEWSISADGAGRQCRWSR 38 >gi|38569493 potassium voltage-gated channel, subfamily H (eag-related), member 3 [Homo sapiens] Length = 1083 Score = 28.1 bits (61), Expect = 1.6 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%) Query: 15 LVPMEWSISADGVGRRVGHYADGAGPMEWGAEWSISADGAGRQCRWSRVPGP 66 L PM W++ D R V DG G + ++S +G +C S PGP Sbjct: 809 LPPMPWNVPPDLSPRVVDGIEDGCGSDQ--PKFSFRVGQSGPECSSSPSPGP 858 >gi|5730081 T-box, brain, 1 [Homo sapiens] Length = 682 Score = 26.9 bits (58), Expect = 3.5 Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 7/38 (18%) Query: 8 SAAGVGALVPMEWSISADGVGRRVGHYADGAGPMEWGA 45 +AAGV AL P++ +A GR +G+YAD +G WGA Sbjct: 517 AAAGVKAL-PLQ---AAGCTGRPLGYYADPSG---WGA 547 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.316 0.133 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,291,958 Number of Sequences: 37866 Number of extensions: 126796 Number of successful extensions: 240 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 222 Number of HSP's gapped (non-prelim): 7 length of query: 68 length of database: 18,247,518 effective HSP length: 41 effective length of query: 27 effective length of database: 16,695,012 effective search space: 450765324 effective search space used: 450765324 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.