Search of human proteins with 239756239

Search of human proteins with 239756239

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239756239 PREDICTED: similar to hCG2006901 [Homo sapiens]
         (262 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756239 PREDICTED: similar to hCG2006901 [Homo sapiens]          525   e-149
gi|239750779 PREDICTED: similar to hCG2006901 [Homo sapiens]          120   9e-28
gi|126032348 hect domain and RLD 2 [Homo sapiens]                     114   7e-26
gi|239745529 PREDICTED: hypothetical protein XP_002343479 [Homo ...    91   1e-18
gi|149363656 SEC15-like 2 [Homo sapiens]                               33   0.25 
gi|148833506 obscurin, cytoskeletal calmodulin and titin-interac...    28   6.2  
gi|239753576 PREDICTED: hypothetical protein [Homo sapiens]            28   6.2  
gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo ...    28   8.1  
gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo ...    28   8.1  
gi|13376339 plasticity-related protein 2 [Homo sapiens]                28   8.1  

>gi|239756239 PREDICTED: similar to hCG2006901 [Homo sapiens]
          Length = 262

 Score =  525 bits (1351), Expect = e-149
 Identities = 262/262 (100%), Positives = 262/262 (100%)

Query: 1   MFTEYQALKGQNHPPTGPALGPGHPAGAGCAERHAEVRAGADRECFGEAPLQMLSAILLL 60
           MFTEYQALKGQNHPPTGPALGPGHPAGAGCAERHAEVRAGADRECFGEAPLQMLSAILLL
Sbjct: 1   MFTEYQALKGQNHPPTGPALGPGHPAGAGCAERHAEVRAGADRECFGEAPLQMLSAILLL 60

Query: 61  LQLWYSGAQETDNERSAQGTSAPLLPLLQRFQSIICRKDAPHSEGDMHCFSLVSVCLVVT 120
           LQLWYSGAQETDNERSAQGTSAPLLPLLQRFQSIICRKDAPHSEGDMHCFSLVSVCLVVT
Sbjct: 61  LQLWYSGAQETDNERSAQGTSAPLLPLLQRFQSIICRKDAPHSEGDMHCFSLVSVCLVVT 120

Query: 121 AASQMRQVWEATCLWRRLRSVRADFLVSTEPSLKHALLNQYQKRTTKIVACFVGPSFVLG 180
           AASQMRQVWEATCLWRRLRSVRADFLVSTEPSLKHALLNQYQKRTTKIVACFVGPSFVLG
Sbjct: 121 AASQMRQVWEATCLWRRLRSVRADFLVSTEPSLKHALLNQYQKRTTKIVACFVGPSFVLG 180

Query: 181 SVQGMSPELSLCLVPAPPLIGVDVFLNSLKQTVVTLASSADVLSTEQSASQAMLQSGWSM 240
           SVQGMSPELSLCLVPAPPLIGVDVFLNSLKQTVVTLASSADVLSTEQSASQAMLQSGWSM
Sbjct: 181 SVQGMSPELSLCLVPAPPLIGVDVFLNSLKQTVVTLASSADVLSTEQSASQAMLQSGWSM 240

Query: 241 LLPTAEKQARALCSPALRSFRQ 262
           LLPTAEKQARALCSPALRSFRQ
Sbjct: 241 LLPTAEKQARALCSPALRSFRQ 262


>gi|239750779 PREDICTED: similar to hCG2006901 [Homo sapiens]
          Length = 69

 Score =  120 bits (302), Expect = 9e-28
 Identities = 58/66 (87%), Positives = 62/66 (93%)

Query: 52  QMLSAILLLLQLWYSGAQETDNERSAQGTSAPLLPLLQRFQSIICRKDAPHSEGDMHCFS 111
           QMLSAILLLLQLWYSGAQETDNERSAQGTSAPLLPLLQRFQSIICRKDAPHSEGDMH   
Sbjct: 4   QMLSAILLLLQLWYSGAQETDNERSAQGTSAPLLPLLQRFQSIICRKDAPHSEGDMHVSV 63

Query: 112 LVSVCL 117
           ++ +C+
Sbjct: 64  MMELCV 69


>gi|126032348 hect domain and RLD 2 [Homo sapiens]
          Length = 4834

 Score =  114 bits (286), Expect = 7e-26
 Identities = 57/60 (95%), Positives = 57/60 (95%)

Query: 52  QMLSAILLLLQLWYSGAQETDNERSAQGTSAPLLPLLQRFQSIICRKDAPHSEGDMHCFS 111
           QMLSAILLLLQLW SGAQETDNERSAQGTSAPLLPLLQRFQSIICRKDAPHSEGDMH  S
Sbjct: 305 QMLSAILLLLQLWDSGAQETDNERSAQGTSAPLLPLLQRFQSIICRKDAPHSEGDMHLLS 364



 Score = 78.2 bits (191), Expect = 7e-15
 Identities = 42/59 (71%), Positives = 50/59 (84%), Gaps = 3/59 (5%)

Query: 197 PPLIGV---DVFLNSLKQTVVTLASSADVLSTEQSASQAMLQSGWSMLLPTAEKQARAL 252
           P  +G+    + LNSLKQTVVTLASSA VLST QSA+QA+LQSGWS+LLPTAE++ARAL
Sbjct: 850 PEFLGLGLGSILLNSLKQTVVTLASSAGVLSTVQSAAQAVLQSGWSVLLPTAEERARAL 908


>gi|239745529 PREDICTED: hypothetical protein XP_002343479 [Homo
           sapiens]
          Length = 138

 Score = 90.9 bits (224), Expect = 1e-18
 Identities = 48/60 (80%), Positives = 49/60 (81%)

Query: 52  QMLSAILLLLQLWYSGAQETDNERSAQGTSAPLLPLLQRFQSIICRKDAPHSEGDMHCFS 111
           QMLSAILLLLQLW S AQETDNERSAQGTS  LL LLQ FQSIIC KD P SEG+MH  S
Sbjct: 44  QMLSAILLLLQLWDSRAQETDNERSAQGTSTLLLSLLQTFQSIICGKDTPPSEGNMHLLS 103


>gi|149363656 SEC15-like 2 [Homo sapiens]
          Length = 811

 Score = 33.1 bits (74), Expect = 0.25
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 3/80 (3%)

Query: 106 DMHCFSLVSVCLVVTAASQMRQVWEATCLWRRLRSVRADFLVSTEPSLKHALLNQYQKRT 165
           D+  FS V  CL + +    R+ +E     +R +  R   LV   PS  H  L+ Y+K  
Sbjct: 288 DLVDFSPVYRCLHIYSVLGARETFENYYRKQRRKQAR---LVLQPPSNMHETLDGYRKYF 344

Query: 166 TKIVACFVGPSFVLGSVQGM 185
            +IV  FV    +L + QG+
Sbjct: 345 NQIVGFFVVEDHILHTTQGL 364


>gi|148833506 obscurin, cytoskeletal calmodulin and titin-interacting
            RhoGEF isoform b [Homo sapiens]
          Length = 7968

 Score = 28.5 bits (62), Expect = 6.2
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 14   PPTGPALGPGHPAGAGCAERHAEVRA 39
            PP  P  G G PA  GC  RH+ +R+
Sbjct: 6848 PPASPE-GAGPPAAQGCVPRHSVIRS 6872


>gi|239753576 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 423

 Score = 28.5 bits (62), Expect = 6.2
 Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 4/37 (10%)

Query: 11  QNHPPTGPALGPGHPAGAGCAERHAEVRAGADRECFG 47
           Q  PP G A GPGH    G  ER      GA R C G
Sbjct: 144 QGRPPDGYAGGPGH----GGQERIHACSLGAGRRCGG 176


>gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo
           sapiens]
          Length = 258

 Score = 28.1 bits (61), Expect = 8.1
 Identities = 13/26 (50%), Positives = 13/26 (50%)

Query: 15  PTGPALGPGHPAGAGCAERHAEVRAG 40
           P  PA  P HP GAGC  R     AG
Sbjct: 191 PHRPAGQPSHPGGAGCCPRVCGPAAG 216


>gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo
           sapiens]
          Length = 258

 Score = 28.1 bits (61), Expect = 8.1
 Identities = 13/26 (50%), Positives = 13/26 (50%)

Query: 15  PTGPALGPGHPAGAGCAERHAEVRAG 40
           P  PA  P HP GAGC  R     AG
Sbjct: 191 PHRPAGQPSHPGGAGCCPRVCGPAAG 216


>gi|13376339 plasticity-related protein 2 [Homo sapiens]
          Length = 746

 Score = 28.1 bits (61), Expect = 8.1
 Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 11/41 (26%)

Query: 10  GQNHPPTGPA---LGPG--------HPAGAGCAERHAEVRA 39
           G+  PP G A   LGPG        H  G G AER AE  A
Sbjct: 692 GEGLPPLGAADGALGPGSRESTLRRHAGGLGLAEREAEAEA 732


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.131    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,347,786
Number of Sequences: 37866
Number of extensions: 436309
Number of successful extensions: 1533
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1524
Number of HSP's gapped (non-prelim): 13
length of query: 262
length of database: 18,247,518
effective HSP length: 100
effective length of query: 162
effective length of database: 14,460,918
effective search space: 2342668716
effective search space used: 2342668716
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.