BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239756081 PREDICTED: hypothetical protein [Homo sapiens] (244 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239756081 PREDICTED: hypothetical protein [Homo sapiens] 508 e-144 gi|239750610 PREDICTED: hypothetical protein [Homo sapiens] 495 e-140 gi|239744917 PREDICTED: hypothetical protein XP_002343306 [Homo ... 495 e-140 gi|123701326 zinc finger protein 831 [Homo sapiens] 31 0.86 gi|158186614 transmembrane protein 118 isoform 1 [Homo sapiens] 29 3.3 gi|158186612 transmembrane protein 118 isoform 2 [Homo sapiens] 29 3.3 gi|38044112 restin isoform b [Homo sapiens] 29 4.3 gi|4506751 restin isoform a [Homo sapiens] 29 4.3 gi|4503659 ubiquitin-like protein fubi and ribosomal protein S30... 29 4.3 gi|55750053 atrophin-1 [Homo sapiens] 29 4.3 gi|55750041 atrophin-1 [Homo sapiens] 29 4.3 gi|38158015 mastermind-like 3 [Homo sapiens] 28 7.3 gi|55741655 anoctamin 8 [Homo sapiens] 28 9.5 >gi|239756081 PREDICTED: hypothetical protein [Homo sapiens] Length = 244 Score = 508 bits (1308), Expect = e-144 Identities = 244/244 (100%), Positives = 244/244 (100%) Query: 1 MASEEEDCKAHRQHQEQQQHGQHHGSRAHRPAALLVHLNDDHLRLLLSPLIRPASRWAAH 60 MASEEEDCKAHRQHQEQQQHGQHHGSRAHRPAALLVHLNDDHLRLLLSPLIRPASRWAAH Sbjct: 1 MASEEEDCKAHRQHQEQQQHGQHHGSRAHRPAALLVHLNDDHLRLLLSPLIRPASRWAAH 60 Query: 61 PAVLMDAGRPRQNWPMGIGYPSITWLFLTRQNQRSWKPVNAGKSIMSTKPVSKLLWVEVR 120 PAVLMDAGRPRQNWPMGIGYPSITWLFLTRQNQRSWKPVNAGKSIMSTKPVSKLLWVEVR Sbjct: 61 PAVLMDAGRPRQNWPMGIGYPSITWLFLTRQNQRSWKPVNAGKSIMSTKPVSKLLWVEVR 120 Query: 121 ECLEAGPRSREDLCPRLGRVKVGVSSNVGAWEVGMGQEAALTIEGRAVAMEALGKEDHDV 180 ECLEAGPRSREDLCPRLGRVKVGVSSNVGAWEVGMGQEAALTIEGRAVAMEALGKEDHDV Sbjct: 121 ECLEAGPRSREDLCPRLGRVKVGVSSNVGAWEVGMGQEAALTIEGRAVAMEALGKEDHDV 180 Query: 181 GLLLMALTDVGIGHLAEAQWCGTLPHAERLANGLVCGILAHLGGVILDAEKVISLCCHLR 240 GLLLMALTDVGIGHLAEAQWCGTLPHAERLANGLVCGILAHLGGVILDAEKVISLCCHLR Sbjct: 181 GLLLMALTDVGIGHLAEAQWCGTLPHAERLANGLVCGILAHLGGVILDAEKVISLCCHLR 240 Query: 241 PWMA 244 PWMA Sbjct: 241 PWMA 244 >gi|239750610 PREDICTED: hypothetical protein [Homo sapiens] Length = 248 Score = 495 bits (1274), Expect = e-140 Identities = 241/248 (97%), Positives = 241/248 (97%), Gaps = 4/248 (1%) Query: 1 MASEEEDCKAHRQHQEQQQHGQHHGSRAHRPAALLVHLNDDHLRLLLSPLIRPASRWAAH 60 MASEEEDCKAHRQHQEQQQHGQHHGSRAHRPAALLVHLNDDHLRLLLSPLIRPASRWAAH Sbjct: 1 MASEEEDCKAHRQHQEQQQHGQHHGSRAHRPAALLVHLNDDHLRLLLSPLIRPASRWAAH 60 Query: 61 PAVLMDAGRPRQNWPMGIGYPSITWLFLTRQNQRSWKPVNAGKSIM----STKPVSKLLW 116 PAVLMDAGRPRQNWPMGIGYPSITWLFLTRQNQRSWKPVNAGK STKPVSKLLW Sbjct: 61 PAVLMDAGRPRQNWPMGIGYPSITWLFLTRQNQRSWKPVNAGKVHYVLRPSTKPVSKLLW 120 Query: 117 VEVRECLEAGPRSREDLCPRLGRVKVGVSSNVGAWEVGMGQEAALTIEGRAVAMEALGKE 176 VEVRECLEAGPRSREDLCPRLGRVKVGVSSNVGAWEVGMGQEAALTIEGRAVAMEALGKE Sbjct: 121 VEVRECLEAGPRSREDLCPRLGRVKVGVSSNVGAWEVGMGQEAALTIEGRAVAMEALGKE 180 Query: 177 DHDVGLLLMALTDVGIGHLAEAQWCGTLPHAERLANGLVCGILAHLGGVILDAEKVISLC 236 DHDVGLLLMALTDVGIGHLAEAQWCGTLPHAERLANGLVCGILAHLGGVILDAEKVISLC Sbjct: 181 DHDVGLLLMALTDVGIGHLAEAQWCGTLPHAERLANGLVCGILAHLGGVILDAEKVISLC 240 Query: 237 CHLRPWMA 244 CHLRPWMA Sbjct: 241 CHLRPWMA 248 >gi|239744917 PREDICTED: hypothetical protein XP_002343306 [Homo sapiens] Length = 248 Score = 495 bits (1274), Expect = e-140 Identities = 241/248 (97%), Positives = 241/248 (97%), Gaps = 4/248 (1%) Query: 1 MASEEEDCKAHRQHQEQQQHGQHHGSRAHRPAALLVHLNDDHLRLLLSPLIRPASRWAAH 60 MASEEEDCKAHRQHQEQQQHGQHHGSRAHRPAALLVHLNDDHLRLLLSPLIRPASRWAAH Sbjct: 1 MASEEEDCKAHRQHQEQQQHGQHHGSRAHRPAALLVHLNDDHLRLLLSPLIRPASRWAAH 60 Query: 61 PAVLMDAGRPRQNWPMGIGYPSITWLFLTRQNQRSWKPVNAGKSIM----STKPVSKLLW 116 PAVLMDAGRPRQNWPMGIGYPSITWLFLTRQNQRSWKPVNAGK STKPVSKLLW Sbjct: 61 PAVLMDAGRPRQNWPMGIGYPSITWLFLTRQNQRSWKPVNAGKVHYVLRPSTKPVSKLLW 120 Query: 117 VEVRECLEAGPRSREDLCPRLGRVKVGVSSNVGAWEVGMGQEAALTIEGRAVAMEALGKE 176 VEVRECLEAGPRSREDLCPRLGRVKVGVSSNVGAWEVGMGQEAALTIEGRAVAMEALGKE Sbjct: 121 VEVRECLEAGPRSREDLCPRLGRVKVGVSSNVGAWEVGMGQEAALTIEGRAVAMEALGKE 180 Query: 177 DHDVGLLLMALTDVGIGHLAEAQWCGTLPHAERLANGLVCGILAHLGGVILDAEKVISLC 236 DHDVGLLLMALTDVGIGHLAEAQWCGTLPHAERLANGLVCGILAHLGGVILDAEKVISLC Sbjct: 181 DHDVGLLLMALTDVGIGHLAEAQWCGTLPHAERLANGLVCGILAHLGGVILDAEKVISLC 240 Query: 237 CHLRPWMA 244 CHLRPWMA Sbjct: 241 CHLRPWMA 248 >gi|123701326 zinc finger protein 831 [Homo sapiens] Length = 1677 Score = 31.2 bits (69), Expect = 0.86 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%) Query: 116 WVEVRECLEAGPRSREDLCPRLGRVKVGVSSNVGAWEVGMGQEAALTIEGRAVAMEAL 173 W+E RE + R+++ L PR G ++G S + + +V G AL R A+E L Sbjct: 516 WLEPREPRDPWSRTQKPLSPRPGPARLGCRSGLSSTDVPSGHPRALV---RQAAVEDL 570 >gi|158186614 transmembrane protein 118 isoform 1 [Homo sapiens] Length = 444 Score = 29.3 bits (64), Expect = 3.3 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%) Query: 14 HQEQQQHGQHHGSRAHRPAALLVHLNDDH 42 H Q H HHG HR +LL H+ DH Sbjct: 108 HHRQPHHHFHHGG--HRGGSLLQHVGGDH 134 >gi|158186612 transmembrane protein 118 isoform 2 [Homo sapiens] Length = 420 Score = 29.3 bits (64), Expect = 3.3 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%) Query: 14 HQEQQQHGQHHGSRAHRPAALLVHLNDDH 42 H Q H HHG HR +LL H+ DH Sbjct: 108 HHRQPHHHFHHGG--HRGGSLLQHVGGDH 134 >gi|38044112 restin isoform b [Homo sapiens] Length = 1392 Score = 28.9 bits (63), Expect = 4.3 Identities = 11/24 (45%), Positives = 12/24 (50%) Query: 4 EEEDCKAHRQHQEQQQHGQHHGSR 27 + EDC Q E H HHGSR Sbjct: 1343 DTEDCPTQAQMSEDPPHSTHHGSR 1366 >gi|4506751 restin isoform a [Homo sapiens] Length = 1427 Score = 28.9 bits (63), Expect = 4.3 Identities = 11/24 (45%), Positives = 12/24 (50%) Query: 4 EEEDCKAHRQHQEQQQHGQHHGSR 27 + EDC Q E H HHGSR Sbjct: 1378 DTEDCPTQAQMSEDPPHSTHHGSR 1401 >gi|4503659 ubiquitin-like protein fubi and ribosomal protein S30 precursor [Homo sapiens] Length = 133 Score = 28.9 bits (63), Expect = 4.3 Identities = 24/77 (31%), Positives = 30/77 (38%) Query: 156 GQEAALTIEGRAVAMEALGKEDHDVGLLLMALTDVGIGHLAEAQWCGTLPHAERLANGLV 215 GQE I+ ++E + ED V L L D + TL A R+ G V Sbjct: 17 GQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGGKV 76 Query: 216 CGILAHLGGVILDAEKV 232 G LA G V KV Sbjct: 77 HGSLARAGKVRGQTPKV 93 >gi|55750053 atrophin-1 [Homo sapiens] Length = 1190 Score = 28.9 bits (63), Expect = 4.3 Identities = 11/34 (32%), Positives = 18/34 (52%) Query: 4 EEEDCKAHRQHQEQQQHGQHHGSRAHRPAALLVH 37 +++ + +Q Q+QQQ QHHG+ P H Sbjct: 484 QQQQQQQQQQQQQQQQQQQHHGNSGPPPPGAFPH 517 >gi|55750041 atrophin-1 [Homo sapiens] Length = 1190 Score = 28.9 bits (63), Expect = 4.3 Identities = 11/34 (32%), Positives = 18/34 (52%) Query: 4 EEEDCKAHRQHQEQQQHGQHHGSRAHRPAALLVH 37 +++ + +Q Q+QQQ QHHG+ P H Sbjct: 484 QQQQQQQQQQQQQQQQQQQHHGNSGPPPPGAFPH 517 >gi|38158015 mastermind-like 3 [Homo sapiens] Length = 1133 Score = 28.1 bits (61), Expect = 7.3 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 9/83 (10%) Query: 5 EEDCKAHRQHQEQQQHGQHHGSRAHRPAALLVHLNDDHLRLLL---SPLIRPASRWAAHP 61 ++ + +Q Q+QQQ Q + P A HL++D RLLL ++ +AA P Sbjct: 629 QQQQQQQQQQQQQQQQQQPPPPQLQAPRA---HLSEDQKRLLLMKQKGVMNQPMAYAALP 685 Query: 62 AVLMD---AGRPRQNWPMGIGYP 81 + + G PR PM P Sbjct: 686 SHGQEQHPVGLPRTTGPMQSSVP 708 >gi|55741655 anoctamin 8 [Homo sapiens] Length = 1232 Score = 27.7 bits (60), Expect = 9.5 Identities = 8/25 (32%), Positives = 16/25 (64%) Query: 5 EEDCKAHRQHQEQQQHGQHHGSRAH 29 ++ + R+ +E+Q+H +HH R H Sbjct: 898 QQQQRRRREEEERQRHAEHHARREH 922 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.321 0.135 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,226,260 Number of Sequences: 37866 Number of extensions: 465355 Number of successful extensions: 1231 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 1209 Number of HSP's gapped (non-prelim): 18 length of query: 244 length of database: 18,247,518 effective HSP length: 99 effective length of query: 145 effective length of database: 14,498,784 effective search space: 2102323680 effective search space used: 2102323680 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.