Search of human proteins with 239755416

Search of human proteins with 239755416

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239755416 PREDICTED: hypothetical protein [Homo sapiens]
         (42 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755416 PREDICTED: hypothetical protein [Homo sapiens]            92   7e-20
gi|239749900 PREDICTED: hypothetical protein [Homo sapiens]            92   7e-20
gi|239744200 PREDICTED: hypothetical protein XP_002343073 [Homo ...    92   7e-20
gi|23308579 prostaglandin-E synthase 3 [Homo sapiens]                  73   4e-14
gi|115529463 protein kinase D1 [Homo sapiens]                          26   6.0  
gi|218505711 small acidic protein isoform b [Homo sapiens]             26   6.0  
gi|7657234 small acidic protein isoform a [Homo sapiens]               26   6.0  
gi|21361794 TIP120 protein [Homo sapiens]                              26   6.0  
gi|7661622 hypothetical protein LOC25906 [Homo sapiens]                26   6.0  
gi|4508005 tripartite motif-containing 26 [Homo sapiens]               26   6.0  
gi|51477718 TATA box binding protein-associated factor, RNA poly...    26   7.9  
gi|20270337 Leo1, Paf1/RNA polymerase II complex component, homo...    26   7.9  

>gi|239755416 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 42

 Score = 92.4 bits (228), Expect = 7e-20
 Identities = 42/42 (100%), Positives = 42/42 (100%)

Query: 1  MSDFDYFSEMMNHMGGEEDVDLADGADDHSQDSDDEKMPDLE 42
          MSDFDYFSEMMNHMGGEEDVDLADGADDHSQDSDDEKMPDLE
Sbjct: 1  MSDFDYFSEMMNHMGGEEDVDLADGADDHSQDSDDEKMPDLE 42


>gi|239749900 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 42

 Score = 92.4 bits (228), Expect = 7e-20
 Identities = 42/42 (100%), Positives = 42/42 (100%)

Query: 1  MSDFDYFSEMMNHMGGEEDVDLADGADDHSQDSDDEKMPDLE 42
          MSDFDYFSEMMNHMGGEEDVDLADGADDHSQDSDDEKMPDLE
Sbjct: 1  MSDFDYFSEMMNHMGGEEDVDLADGADDHSQDSDDEKMPDLE 42


>gi|239744200 PREDICTED: hypothetical protein XP_002343073 [Homo
          sapiens]
          Length = 42

 Score = 92.4 bits (228), Expect = 7e-20
 Identities = 42/42 (100%), Positives = 42/42 (100%)

Query: 1  MSDFDYFSEMMNHMGGEEDVDLADGADDHSQDSDDEKMPDLE 42
          MSDFDYFSEMMNHMGGEEDVDLADGADDHSQDSDDEKMPDLE
Sbjct: 1  MSDFDYFSEMMNHMGGEEDVDLADGADDHSQDSDDEKMPDLE 42


>gi|23308579 prostaglandin-E synthase 3 [Homo sapiens]
          Length = 160

 Score = 73.2 bits (178), Expect = 4e-14
 Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 2/44 (4%)

Query: 1   MSDFDYFSEMMNHMGGEEDVDL--ADGADDHSQDSDDEKMPDLE 42
           MS+FD FSEMMN+MGG+EDVDL   DGADD SQDSDDEKMPDLE
Sbjct: 117 MSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE 160


>gi|115529463 protein kinase D1 [Homo sapiens]
          Length = 912

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 15  GGEEDVDLADGADDHSQDSDDEKMPDLE 42
           G E DV + +G+DD+  + +   M D+E
Sbjct: 334 GAESDVVMEEGSDDNDSERNSGLMDDME 361


>gi|218505711 small acidic protein isoform b [Homo sapiens]
          Length = 139

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 7  FSEMMNHMGGEEDVDLADGADDHSQDSDDEKMPD 40
          FSE+ +H G   + D+A   DD   DS D + PD
Sbjct: 60 FSEVEDHDG---EGDVAGDDDDDDDDSPDPESPD 90


>gi|7657234 small acidic protein isoform a [Homo sapiens]
          Length = 183

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 7   FSEMMNHMGGEEDVDLADGADDHSQDSDDEKMPD 40
           FSE+ +H G   + D+A   DD   DS D + PD
Sbjct: 104 FSEVEDHDG---EGDVAGDDDDDDDDSPDPESPD 134


>gi|21361794 TIP120 protein [Homo sapiens]
          Length = 1230

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)

Query: 6   YFSEMMNHMGGEEDVDL----ADGADDHSQDSDDEKMPD 40
           Y +   N+   +ED D     ADG DD  Q SDDE   D
Sbjct: 304 YLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDD 342


>gi|7661622 hypothetical protein LOC25906 [Homo sapiens]
          Length = 121

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 13 HMGGEEDVDLADGADDHSQDSDDEKMPDLE 42
          H   EE+ D  D  D      DDE M D++
Sbjct: 61 HYDDEEEEDDEDDEDSEEDSEDDEDMQDMD 90


>gi|4508005 tripartite motif-containing 26 [Homo sapiens]
          Length = 539

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 17  EEDVDLADGADDHSQDSDDEKMPDLE 42
           EE+    DG DD   D D+E + D E
Sbjct: 398 EEEAGYGDGYDDWETDEDEESLGDEE 423


>gi|51477718 TATA box binding protein-associated factor, RNA
           polymerase II, Q [Homo sapiens]
          Length = 462

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 2   SDFDYFSEMMNHMGGEEDVDLADGADDHSQDSDDEKMPDLE 42
           S++D   EM +      D D  +  +D  +D D+++  D E
Sbjct: 316 SEYDMLREMFSDSRSNNDDDEDEDDEDEDEDEDEDEDEDKE 356



 Score = 25.8 bits (55), Expect = 7.9
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query: 5   DYFSEMMNHMGGEEDVDLADGADDHSQDSDDEKMPDLE 42
           + FS+  ++   +ED D  D  +D  +D D++K  + E
Sbjct: 323 EMFSDSRSNNDDDEDEDDEDEDEDEDEDEDEDKEEEEE 360


>gi|20270337 Leo1, Paf1/RNA polymerase II complex component, homolog
           [Homo sapiens]
          Length = 666

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 17  EEDVDLADGADDHSQDSDDEKMPDL 41
           +++  +A   DD  Q+SDDE+ P L
Sbjct: 213 DDERPVASDNDDEKQNSDDEEQPQL 237


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.308    0.131    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,812,257
Number of Sequences: 37866
Number of extensions: 49646
Number of successful extensions: 324
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 307
Number of HSP's gapped (non-prelim): 18
length of query: 42
length of database: 18,247,518
effective HSP length: 16
effective length of query: 26
effective length of database: 17,641,662
effective search space: 458683212
effective search space used: 458683212
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.