Search of human proteins with 239755357

Search of human proteins with 239755357

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239755357 PREDICTED: similar to hCG2039035 [Homo sapiens]
         (112 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755357 PREDICTED: similar to hCG2039035 [Homo sapiens]          238   1e-63
gi|239749854 PREDICTED: hypothetical protein XP_002347188 [Homo ...   238   1e-63
gi|239744155 PREDICTED: hypothetical protein XP_002343067 [Homo ...   234   8e-63
gi|169161039 PREDICTED: hypothetical protein LOC400743 [Homo sap...    30   0.32 
gi|169162103 PREDICTED: hypothetical protein LOC400743 [Homo sap...    30   0.32 
gi|169162790 PREDICTED: hypothetical protein LOC400743 [Homo sap...    30   0.41 
gi|13994236 cat eye syndrome chromosome region, candidate 6 isof...    29   0.71 
gi|251823730 cat eye syndrome chromosome region, candidate 6 iso...    27   2.7  
gi|218505680 exoribonuclease 2 isoform 1 [Homo sapiens]                27   3.5  
gi|150456424 RW1 protein [Homo sapiens]                                27   4.6  
gi|42794622 zinc finger protein 784 [Homo sapiens]                     27   4.6  
gi|51468073 solute carrier family 6, member 19 [Homo sapiens]          26   6.0  
gi|122056685 peptidylarginine deiminase type I [Homo sapiens]          26   6.0  
gi|34486092 adenylate cyclase 5 [Homo sapiens]                         26   6.0  
gi|9789897 leukotriene B4 receptor 2 [Homo sapiens]                    26   7.8  
gi|4501867 aconitase 2, mitochondrial precursor [Homo sapiens]         26   7.8  
gi|46909600 a disintegrin and metalloproteinase domain 15 isofor...    26   7.8  
gi|40255178 tudor domain containing 5 [Homo sapiens]                   26   7.8  
gi|42475534 calsyntenin 3 [Homo sapiens]                               26   7.8  

>gi|239755357 PREDICTED: similar to hCG2039035 [Homo sapiens]
          Length = 112

 Score =  238 bits (606), Expect = 1e-63
 Identities = 112/112 (100%), Positives = 112/112 (100%)

Query: 1   MTDLASGPQAFPVAVFMTLLRSSNPSHVWNHSLPDRRISWPQLMICTKPNLFWGTHQASG 60
           MTDLASGPQAFPVAVFMTLLRSSNPSHVWNHSLPDRRISWPQLMICTKPNLFWGTHQASG
Sbjct: 1   MTDLASGPQAFPVAVFMTLLRSSNPSHVWNHSLPDRRISWPQLMICTKPNLFWGTHQASG 60

Query: 61  LTFSALLSLPICPGFLLVSTTGHLSEAGSPPGSCGLLPRAWREAAPTLEDDS 112
           LTFSALLSLPICPGFLLVSTTGHLSEAGSPPGSCGLLPRAWREAAPTLEDDS
Sbjct: 61  LTFSALLSLPICPGFLLVSTTGHLSEAGSPPGSCGLLPRAWREAAPTLEDDS 112


>gi|239749854 PREDICTED: hypothetical protein XP_002347188 [Homo
           sapiens]
          Length = 112

 Score =  238 bits (606), Expect = 1e-63
 Identities = 112/112 (100%), Positives = 112/112 (100%)

Query: 1   MTDLASGPQAFPVAVFMTLLRSSNPSHVWNHSLPDRRISWPQLMICTKPNLFWGTHQASG 60
           MTDLASGPQAFPVAVFMTLLRSSNPSHVWNHSLPDRRISWPQLMICTKPNLFWGTHQASG
Sbjct: 1   MTDLASGPQAFPVAVFMTLLRSSNPSHVWNHSLPDRRISWPQLMICTKPNLFWGTHQASG 60

Query: 61  LTFSALLSLPICPGFLLVSTTGHLSEAGSPPGSCGLLPRAWREAAPTLEDDS 112
           LTFSALLSLPICPGFLLVSTTGHLSEAGSPPGSCGLLPRAWREAAPTLEDDS
Sbjct: 61  LTFSALLSLPICPGFLLVSTTGHLSEAGSPPGSCGLLPRAWREAAPTLEDDS 112


>gi|239744155 PREDICTED: hypothetical protein XP_002343067 [Homo
           sapiens]
          Length = 112

 Score =  234 bits (598), Expect = 8e-63
 Identities = 111/112 (99%), Positives = 111/112 (99%)

Query: 1   MTDLASGPQAFPVAVFMTLLRSSNPSHVWNHSLPDRRISWPQLMICTKPNLFWGTHQASG 60
           MTDLASGPQAFPVAVFMTLLRSSN SHVWNHSLPDRRISWPQLMICTKPNLFWGTHQASG
Sbjct: 1   MTDLASGPQAFPVAVFMTLLRSSNSSHVWNHSLPDRRISWPQLMICTKPNLFWGTHQASG 60

Query: 61  LTFSALLSLPICPGFLLVSTTGHLSEAGSPPGSCGLLPRAWREAAPTLEDDS 112
           LTFSALLSLPICPGFLLVSTTGHLSEAGSPPGSCGLLPRAWREAAPTLEDDS
Sbjct: 61  LTFSALLSLPICPGFLLVSTTGHLSEAGSPPGSCGLLPRAWREAAPTLEDDS 112


>gi|169161039 PREDICTED: hypothetical protein LOC400743 [Homo
           sapiens]
          Length = 190

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 8/109 (7%)

Query: 9   QAFPVAVFMTLLRSSNPSHVWNHSLPDRRISWPQLMICTKPNLFWGTHQASGLTFSALLS 68
           Q FP+ + + L +S    H    SL     S+P L +    +LFW    +  L FS LLS
Sbjct: 47  QFFPLHLSLWLSQSLFAPHCLCLSL--HLSSFPGLSLSLS-SLFWAFSVSVSLFFSLLLS 103

Query: 69  LPICPGFLLVSTTGH----LSEAGSPPGSCGLLPR-AWREAAPTLEDDS 112
           + +     L     H    LS  G+P  S G  PR    EA     DD+
Sbjct: 104 VSVHFSVCLCPLHSHSPPMLSSLGAPLASLGHRPRLGCEEAGAPPSDDA 152


>gi|169162103 PREDICTED: hypothetical protein LOC400743 [Homo
           sapiens]
          Length = 190

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 8/109 (7%)

Query: 9   QAFPVAVFMTLLRSSNPSHVWNHSLPDRRISWPQLMICTKPNLFWGTHQASGLTFSALLS 68
           Q FP+ + + L +S    H    SL     S+P L +    +LFW    +  L FS LLS
Sbjct: 47  QFFPLHLSLWLSQSLFAPHCLCLSL--HLSSFPGLSLSLS-SLFWAFSVSVSLFFSLLLS 103

Query: 69  LPICPGFLLVSTTGH----LSEAGSPPGSCGLLPR-AWREAAPTLEDDS 112
           + +     L     H    LS  G+P  S G  PR    EA     DD+
Sbjct: 104 VSVHFSVCLCPLHSHSPPMLSSLGAPLASLGHRPRLGCEEAGAPPSDDA 152


>gi|169162790 PREDICTED: hypothetical protein LOC400743 [Homo
           sapiens]
          Length = 190

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 34/109 (31%), Positives = 45/109 (41%), Gaps = 8/109 (7%)

Query: 9   QAFPVAVFMTLLRSSNPSHVWNHSLPDRRISWPQLMICTKPNLFWGTHQASGLTFSALLS 68
           Q FP+ + + L +S    H    SL     S+P L +    +LFW       L FS LLS
Sbjct: 47  QFFPLHLSLWLSQSLFAPHCLCLSL--HLSSFPGLSLSLS-SLFWAFSVCVSLFFSLLLS 103

Query: 69  LPICPGFLLVSTTGH----LSEAGSPPGSCGLLPR-AWREAAPTLEDDS 112
           + +     L     H    LS  G+P  S G  PR    EA     DD+
Sbjct: 104 VSVHFSVCLCPLHSHSPPMLSSLGAPLASLGHRPRLGCEEAGAPPSDDA 152


>gi|13994236 cat eye syndrome chromosome region, candidate 6 isoform
           a [Homo sapiens]
          Length = 578

 Score = 29.3 bits (64), Expect = 0.71
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 5/39 (12%)

Query: 59  SGLTFSALLSLPICPGFLLVSTTGHLSEAGSPPGSCGLL 97
           +G   +  LS+P     LL S    +SEAG+PPGS G L
Sbjct: 350 TGFRLTMALSVP-----LLYSLVRAISEAGAPPGSAGPL 383


>gi|251823730 cat eye syndrome chromosome region, candidate 6
          isoform b [Homo sapiens]
          Length = 223

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 13/22 (59%), Positives = 15/22 (68%)

Query: 76 LLVSTTGHLSEAGSPPGSCGLL 97
          LL S    +SEAG+PPGS G L
Sbjct: 7  LLYSLVRAISEAGAPPGSAGPL 28


>gi|218505680 exoribonuclease 2 isoform 1 [Homo sapiens]
          Length = 691

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 15/45 (33%), Positives = 21/45 (46%)

Query: 40  WPQLMICTKPNLFWGTHQASGLTFSALLSLPICPGFLLVSTTGHL 84
           W Q +   + N    +H   GLTFS+  +  IC   L +ST   L
Sbjct: 639 WEQTLQKERANSMVPSHSTGGLTFSSPETSHICDRNLSISTKNSL 683


>gi|150456424 RW1 protein [Homo sapiens]
          Length = 1883

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 25/108 (23%), Positives = 37/108 (34%), Gaps = 21/108 (19%)

Query: 22   SSNPSHVWNHSLPDRRISWP---------QLMICTKPNLFWGTHQASGLTFSALLS--LP 70
            +S PS++W     D   SWP            +    +  W T   S   +S+ LS  LP
Sbjct: 1759 NSGPSYLWESPATDPSPSWPASSGSPTHTATSVLGNTSGLWSTTPFSSSIWSSNLSSALP 1818

Query: 71   ICPGFLLVSTTG----------HLSEAGSPPGSCGLLPRAWREAAPTL 108
                   +++ G          H     SP    G     WR  +PT+
Sbjct: 1819 FTTPANTLASIGLMGTENSPAPHAPSTSSPADDLGQTYNPWRIWSPTI 1866


>gi|42794622 zinc finger protein 784 [Homo sapiens]
          Length = 323

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 72  CPGFLLVSTTGHLS-EAGSPPGSCGLLPRAWREAAPTL 108
           CPG    S   H S   G  P  C L PRA++  AP L
Sbjct: 110 CPG--PASLRAHYSLHTGERPYRCALCPRAFKALAPLL 145


>gi|51468073 solute carrier family 6, member 19 [Homo sapiens]
          Length = 634

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 42  QLMICTKPNLFWGTHQASGLTFSALLSLPICPGFLLVSTTGHLSEAGSPPG 92
           + MI  KPN+FW   Q +    S LL L I   F +V  +  L+ +   PG
Sbjct: 519 EFMIGHKPNIFW---QVTWRVVSPLLMLIIFLFFFVVEVSQELTYSIWDPG 566


>gi|122056685 peptidylarginine deiminase type I [Homo sapiens]
          Length = 663

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 21  RSSNP--SHVWNHSLPDRRISWPQLMICTKPNLFWGTHQ 57
           RS+ P  +H W  SL D +   P L+ C  P+  + +H+
Sbjct: 160 RSAEPDLTHSWLMSLADLQDMSPMLLSCNGPDKLFDSHK 198


>gi|34486092 adenylate cyclase 5 [Homo sapiens]
          Length = 1261

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 16/59 (27%)

Query: 30  NHSLPDRR----ISWPQLMICTKPNLFWGTHQASGLTFSALLSLPICPGFLLVSTTGHL 84
           N+SL D +      WP    C  P  F         T+S LLSL  C  FL +S  G L
Sbjct: 887 NYSLGDEQGFCGSPWPN---CNFPEYF---------TYSVLLSLLACSVFLQISCIGKL 933


>gi|9789897 leukotriene B4 receptor 2 [Homo sapiens]
          Length = 389

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 9/75 (12%)

Query: 42  QLMICTKPN-----LFWGTHQASGLTF---SALLSLPICPGFLLVSTTGHLSEAGSPPGS 93
           ++ +C +P      L W T +A+G  F   +ALL LP   GF++ S  G     G P  +
Sbjct: 31  RMSVCYRPPGNETLLSWKTSRATGTAFLLLAALLGLP-GNGFVVWSLAGWRPARGRPLAA 89

Query: 94  CGLLPRAWREAAPTL 108
             +L  A  + A  L
Sbjct: 90  TLVLHLALADGAVLL 104


>gi|4501867 aconitase 2, mitochondrial precursor [Homo sapiens]
          Length = 780

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 2/43 (4%)

Query: 52  FWGTHQASGLTFSALLSLPICPGFLLVSTTGHLSEAGSPPGSC 94
           FW     SG+    +L     PG LL+ T  H    G   G C
Sbjct: 165 FW--KPGSGIIHQIILENYAYPGVLLIGTDSHTPNGGGLGGIC 205


>gi|46909600 a disintegrin and metalloproteinase domain 15 isoform 6
           preproprotein [Homo sapiens]
          Length = 863

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 34  PDRRISWPQLMICTKPNLFWGTHQASGLTFSALLSLPICPGFLLVSTTGHLSEAGSPP 91
           P  R   PQ  +  +     GT QAS L+F A  S P+ P  +       L++  +PP
Sbjct: 742 PSERPGPPQRALLAR-----GTKQASALSFPAPPSRPLPPDPVSKRLQAELADRPNPP 794


>gi|40255178 tudor domain containing 5 [Homo sapiens]
          Length = 981

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)

Query: 28  VWNHSLPDRRISWPQLMICTKPNL 51
           VWN   P ++   PQ  IC KPNL
Sbjct: 405 VWN--CPSKKQKEPQQKICKKPNL 426


>gi|42475534 calsyntenin 3 [Homo sapiens]
          Length = 956

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 12/91 (13%)

Query: 13  VAVFMTLLRSSNPSHVWNHSLPDRRISWPQLMICTKPNLFWGTHQASGLTFSALLSLPIC 72
           V V  ++ R ++PSHV +      R   P   +    +    +H+ S +  +A L + +C
Sbjct: 798 VNVLHSMNRVAHPSHVLSSQQFLHRGHQPPPEMAG--HSLASSHRNSMIPSAATLIIVVC 855

Query: 73  PGFLLV----------STTGHLSEAGSPPGS 93
            GFL++          S    +S AG PPG+
Sbjct: 856 VGFLVLMVVLGLVRIHSLHRRVSGAGGPPGA 886


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.134    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,316,602
Number of Sequences: 37866
Number of extensions: 227383
Number of successful extensions: 508
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 502
Number of HSP's gapped (non-prelim): 19
length of query: 112
length of database: 18,247,518
effective HSP length: 82
effective length of query: 30
effective length of database: 15,142,506
effective search space: 454275180
effective search space used: 454275180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.