Guide to the Human Genome
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Name: LOC100288717 Sequence: fasta or formatted (112aa) NCBI GI: 239744155
Description:

PREDICTED: hypothetical protein XP_002343067

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0          9           2
 C cysteine            2.7          3           1
 D aspartate           3.6          4           2
 E glutamate           2.7          3           1
 F phenylalanine       4.5          5           1
 G glycine             7.1          8           1
 H histidine           3.6          4           1
 I isoleucine          2.7          3           1
 K lysine              0.9          1           1
 L leucine            14.3         16           2
 M methionine          2.7          3           1
 N asparagine          2.7          3           1
 P proline             9.8         11           2
 Q glutamine           2.7          3           1
 R arginine            4.5          5           2
 S serine             13.4         15           2
 T threonine           7.1          8           2
 V valine              3.6          4           1
 W tryptophan          3.6          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343067 
LOC100293803          0.991   PREDICTED: similar to hCG2039035 
LOC100289684          0.991   PREDICTED: hypothetical protein XP_002347188 
LOC400743             0.028   PREDICTED: hypothetical protein LOC400743 
LOC400743             0.028   PREDICTED: hypothetical protein LOC400743 
LOC400743             0.028   PREDICTED: hypothetical protein LOC400743 
CECR6                 0.019   cat eye syndrome chromosome region, candidate 6 isof...
CECR6                 0.009   cat eye syndrome chromosome region, candidate 6 iso...
ERI2                  0.009   exoribonuclease 2 isoform 1 
ZNF784                0.009   zinc finger protein 784 
SLC6A19               0.005   solute carrier family 6, member 19 
PADI1                 0.005   peptidylarginine deiminase type I 
ADCY5                 0.005   adenylate cyclase 5 
LTB4R2                0.005   leukotriene B4 receptor 2 
ACO2                  0.005   aconitase 2, mitochondrial precursor 
ADAM15                0.005   a disintegrin and metalloproteinase domain 15 isofor...
TDRD5                 0.005   tudor domain containing 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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