Search of human proteins with 239755284

Search of human proteins with 239755284

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239755284 PREDICTED: hypothetical protein [Homo sapiens]
         (62 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755284 PREDICTED: hypothetical protein [Homo sapiens]           136   4e-33
gi|239758079 PREDICTED: hypothetical protein [Homo sapiens]           125   1e-29
gi|239758005 PREDICTED: hypothetical protein XP_002346265 [Homo ...   120   2e-28
gi|239758019 PREDICTED: hypothetical protein [Homo sapiens]           119   7e-28
gi|239758003 PREDICTED: hypothetical protein XP_002346264 [Homo ...   110   2e-25
gi|239758025 PREDICTED: hypothetical protein [Homo sapiens]            97   3e-21
gi|239758117 PREDICTED: hypothetical protein [Homo sapiens]            60   5e-10
gi|239755286 PREDICTED: similar to hCG1742442 [Homo sapiens]           57   3e-09
gi|21071060 SWI/SNF-related matrix-associated actin-dependent re...    26   7.9  
gi|187761314 SWI/SNF-related matrix-associated actin-dependent r...    26   7.9  

>gi|239755284 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 62

 Score =  136 bits (342), Expect = 4e-33
 Identities = 62/62 (100%), Positives = 62/62 (100%)

Query: 1  MESSNGMEWNNPCTRMQSSLNRIEWNHRMDSNGIIIERNRMESSSNGNEWNHHRMEMKGV 60
          MESSNGMEWNNPCTRMQSSLNRIEWNHRMDSNGIIIERNRMESSSNGNEWNHHRMEMKGV
Sbjct: 1  MESSNGMEWNNPCTRMQSSLNRIEWNHRMDSNGIIIERNRMESSSNGNEWNHHRMEMKGV 60

Query: 61 II 62
          II
Sbjct: 61 II 62


>gi|239758079 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 127

 Score =  125 bits (313), Expect = 1e-29
 Identities = 58/62 (93%), Positives = 59/62 (95%)

Query: 1   MESSNGMEWNNPCTRMQSSLNRIEWNHRMDSNGIIIERNRMESSSNGNEWNHHRMEMKGV 60
           MESSNGMEWNNP TRMQSS N IEWNHRMDSNGIIIERNRMESSS+GNEWNHHRMEMKGV
Sbjct: 66  MESSNGMEWNNPWTRMQSSSNGIEWNHRMDSNGIIIERNRMESSSDGNEWNHHRMEMKGV 125

Query: 61  II 62
           II
Sbjct: 126 II 127



 Score = 57.4 bits (137), Expect = 2e-09
 Identities = 34/65 (52%), Positives = 44/65 (67%), Gaps = 10/65 (15%)

Query: 1  MESSNG-----MEWNNPCTRMQSSLNRIEWNHRMDSNGIIIERNRMESSSNGNEWNHHRM 55
          MESS+      +EW+    RM+SS N  EWNHR++SNGIIIE NRM S+ NG + N +RM
Sbjct: 1  MESSSNELNAIIEWS----RMESSSNGKEWNHRIESNGIIIEWNRMVSTPNGKKRN-YRM 55

Query: 56 EMKGV 60
          E K +
Sbjct: 56 ESKRI 60


>gi|239758005 PREDICTED: hypothetical protein XP_002346265 [Homo
           sapiens]
          Length = 127

 Score =  120 bits (301), Expect = 2e-28
 Identities = 55/62 (88%), Positives = 58/62 (93%)

Query: 1   MESSNGMEWNNPCTRMQSSLNRIEWNHRMDSNGIIIERNRMESSSNGNEWNHHRMEMKGV 60
           MESSNGMEWNNP T+MQSS + IEWNHRMDSNGIIIERNRME SSNGNEWNHH+MEMKGV
Sbjct: 66  MESSNGMEWNNPWTQMQSSSHSIEWNHRMDSNGIIIERNRMEPSSNGNEWNHHQMEMKGV 125

Query: 61  II 62
           II
Sbjct: 126 II 127



 Score = 65.1 bits (157), Expect = 1e-11
 Identities = 37/66 (56%), Positives = 48/66 (72%), Gaps = 10/66 (15%)

Query: 1  MESSNG-----MEWNNPCTRMQSSLNRIEWNHRMDSNGIIIERNRMESSSNGNEWNHHRM 55
          MESS+      +EW+    RM+SS N +EWNHR++SNGIIIE NRMES+SNG + N +RM
Sbjct: 1  MESSSNELNAVIEWS----RMESSSNGMEWNHRIESNGIIIEWNRMESTSNGKKRN-YRM 55

Query: 56 EMKGVI 61
          E K +I
Sbjct: 56 ESKRII 61


>gi|239758019 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 86

 Score =  119 bits (297), Expect = 7e-28
 Identities = 56/62 (90%), Positives = 57/62 (91%)

Query: 1  MESSNGMEWNNPCTRMQSSLNRIEWNHRMDSNGIIIERNRMESSSNGNEWNHHRMEMKGV 60
          MESSNGMEWNN  TR QSS  RIEWNHRMDSNGIIIERNRMESSS+GNEWNHHRMEMKGV
Sbjct: 25 MESSNGMEWNNTRTRKQSSSYRIEWNHRMDSNGIIIERNRMESSSDGNEWNHHRMEMKGV 84

Query: 61 II 62
          II
Sbjct: 85 II 86


>gi|239758003 PREDICTED: hypothetical protein XP_002346264 [Homo
           sapiens]
          Length = 135

 Score =  110 bits (275), Expect = 2e-25
 Identities = 52/62 (83%), Positives = 55/62 (88%)

Query: 1   MESSNGMEWNNPCTRMQSSLNRIEWNHRMDSNGIIIERNRMESSSNGNEWNHHRMEMKGV 60
           MESSNGMEWNNP TRMQSS  RIEWNHRMDSNGII ERNRMESSSNGNE +HH ME+ G+
Sbjct: 66  MESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIITERNRMESSSNGNERSHHLMELHGI 125

Query: 61  II 62
           II
Sbjct: 126 II 127



 Score = 53.9 bits (128), Expect = 3e-08
 Identities = 33/63 (52%), Positives = 43/63 (68%), Gaps = 10/63 (15%)

Query: 1  MESSNG-----MEWNNPCTRMQSSLNRIEWNHRMDSNGIIIERNRMESSSNGNEWNHHRM 55
          MESS+      +EW+    RM+SS N  EWNHR++SNGI I+  RMES+SNG + N +RM
Sbjct: 1  MESSSNELNAIIEWS----RMESSSNGKEWNHRIESNGINIKWTRMESTSNGIKRN-YRM 55

Query: 56 EMK 58
          E K
Sbjct: 56 ESK 58


>gi|239758025 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 121

 Score = 97.1 bits (240), Expect = 3e-21
 Identities = 45/50 (90%), Positives = 46/50 (92%)

Query: 1   MESSNGMEWNNPCTRMQSSLNRIEWNHRMDSNGIIIERNRMESSSNGNEW 50
           MESSNGMEWNNP TRMQSS  RIEWNHRMDSNGIIIERNRMESS +GNEW
Sbjct: 66  MESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIIIERNRMESSLDGNEW 115



 Score = 57.8 bits (138), Expect = 2e-09
 Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 10/66 (15%)

Query: 1  MESSNG-----MEWNNPCTRMQSSLNRIEWNHRMDSNGIIIERNRMESSSNGNEWNHHRM 55
          MESS+      +EW+    RM+SS N  EWNHR++SNGI IE  RMES+SNG + N +RM
Sbjct: 1  MESSSNELNAIIEWS----RMESSANGKEWNHRIESNGINIEWTRMESTSNGIKRN-YRM 55

Query: 56 EMKGVI 61
          E K +I
Sbjct: 56 ESKRII 61


>gi|239758117 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 465

 Score = 59.7 bits (143), Expect = 5e-10
 Identities = 32/60 (53%), Positives = 39/60 (65%), Gaps = 4/60 (6%)

Query: 7   MEWNN---PCTRMQSSLNRIEWNH-RMDSNGIIIERNRMESSSNGNEWNHHRMEMKGVII 62
           MEWN       RM+ S N I  +H RM+ NG+IIE NR  SS NG EW+H RM+ KG+II
Sbjct: 405 MEWNGIIIEWNRMELSSNGINRDHHRMEPNGVIIEWNRKASSCNGIEWHHQRMDSKGIII 464



 Score = 48.9 bits (115), Expect = 9e-07
 Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 4/55 (7%)

Query: 12  PCTRMQSSLNRIEWNH----RMDSNGIIIERNRMESSSNGNEWNHHRMEMKGVII 62
           P  +  ++L+++   H    +M+ NGIIIE NRME SSNG   +HHRME  GVII
Sbjct: 384 PLWQKAANLHKMSLPHQLALKMEWNGIIIEWNRMELSSNGINRDHHRMEPNGVII 438



 Score = 36.2 bits (82), Expect = 0.006
 Identities = 20/32 (62%), Positives = 22/32 (68%), Gaps = 5/32 (15%)

Query: 7   MEWNNPCTRMQSSLNRIEWNH-RMDSNGIIIE 37
           +EWN    R  SS N IEW+H RMDS GIIIE
Sbjct: 438 IEWN----RKASSCNGIEWHHQRMDSKGIIIE 465


>gi|239755286 PREDICTED: similar to hCG1742442 [Homo sapiens]
          Length = 296

 Score = 57.0 bits (136), Expect = 3e-09
 Identities = 28/40 (70%), Positives = 32/40 (80%), Gaps = 3/40 (7%)

Query: 23 IEWN-HRMDSNGIIIERNRMESSSNGNEWNHHRMEMKGVI 61
          IEWN HRM+SN III+ NRMES  NG EWNHH+ME  G+I
Sbjct: 7  IEWNRHRMESNAIIIKWNRMES--NGVEWNHHQMESSGII 44



 Score = 29.3 bits (64), Expect = 0.71
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 13/46 (28%)

Query: 1  MESSNGMEWNNPCTRMQSSL----------NRIEWN-HRMDSNGII 35
          MES+  +EWN    RM+S+           N +EWN H+M+S+GII
Sbjct: 1  MESNAIIEWNRH--RMESNAIIIKWNRMESNGVEWNHHQMESSGII 44


>gi|21071060 SWI/SNF-related matrix-associated actin-dependent
          regulator of chromatin a-like 1 [Homo sapiens]
          Length = 954

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 31 SNGIIIERNRMESSSNGNEWNH--HRMEMKGV 60
          S+G+I ++  + SSSN ++  H  H  + KG+
Sbjct: 66 SHGVIFKQQNLSSSSNADQRPHDSHSFQAKGI 97


>gi|187761314 SWI/SNF-related matrix-associated actin-dependent
          regulator of chromatin a-like 1 [Homo sapiens]
          Length = 954

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 31 SNGIIIERNRMESSSNGNEWNH--HRMEMKGV 60
          S+G+I ++  + SSSN ++  H  H  + KG+
Sbjct: 66 SHGVIFKQQNLSSSSNADQRPHDSHSFQAKGI 97


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.125    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,228,615
Number of Sequences: 37866
Number of extensions: 59106
Number of successful extensions: 188
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 136
Number of HSP's gapped (non-prelim): 22
length of query: 62
length of database: 18,247,518
effective HSP length: 35
effective length of query: 27
effective length of database: 16,922,208
effective search space: 456899616
effective search space used: 456899616
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.