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Search of human proteins with 239754974
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754974 PREDICTED: similar to spermatogenesis and
centriole associated 1 [Homo sapiens]
(113 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754974 PREDICTED: similar to spermatogenesis and centriole... 229 3e-61
gi|197276668 spermatogenesis and centriole associated 1 isoform ... 223 3e-59
gi|218749820 hypothetical protein LOC84221 isoform 1 [Homo sapiens] 99 6e-22
gi|23346427 hypothetical protein LOC84221 isoform 2 [Homo sapiens] 99 6e-22
gi|5032281 dystrophin Dp427c isoform [Homo sapiens] 27 3.5
gi|5032307 dystrophin Dp140c isoform [Homo sapiens] 27 3.5
gi|5032291 dystrophin Dp260-2 isoform [Homo sapiens] 27 3.5
gi|150036268 dystrophin Dp260-1 isoform [Homo sapiens] 27 3.5
gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens] 27 3.5
gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens] 27 3.5
gi|5032313 dystrophin Dp140bc isoform [Homo sapiens] 27 3.5
gi|5032311 dystrophin Dp140ab isoform [Homo sapiens] 27 3.5
gi|5032309 dystrophin Dp140b isoform [Homo sapiens] 27 3.5
gi|5032293 dystrophin Dp140 isoform [Homo sapiens] 27 3.5
gi|5032285 dystrophin Dp427l isoform [Homo sapiens] 27 3.5
gi|5032283 dystrophin Dp427m isoform [Homo sapiens] 27 3.5
gi|190610002 zinc finger protein 543 [Homo sapiens] 27 4.6
gi|45545411 NCK-associated protein 1 isoform 2 [Homo sapiens] 27 4.6
gi|28416956 GTPase, IMAP family member 8 [Homo sapiens] 26 7.8
>gi|239754974 PREDICTED: similar to spermatogenesis and centriole
associated 1 [Homo sapiens]
Length = 113
Score = 229 bits (585), Expect = 3e-61
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MEARASLNPSDHKLDEKLCQRLTQRYVSVMNRLQSLGYNGRVHPALTEQLVNAYGILRER 60
MEARASLNPSDHKLDEKLCQRLTQRYVSVMNRLQSLGYNGRVHPALTEQLVNAYGILRER
Sbjct: 1 MEARASLNPSDHKLDEKLCQRLTQRYVSVMNRLQSLGYNGRVHPALTEQLVNAYGILRER 60
Query: 61 PELAASEGGPYTVDFLQRVVVETVHPGMLADALLLLSCLSQLAHDDGKPMFIW 113
PELAASEGGPYTVDFLQRVVVETVHPGMLADALLLLSCLSQLAHDDGKPMFIW
Sbjct: 61 PELAASEGGPYTVDFLQRVVVETVHPGMLADALLLLSCLSQLAHDDGKPMFIW 113
>gi|197276668 spermatogenesis and centriole associated 1 isoform 1
[Homo sapiens]
Length = 591
Score = 223 bits (567), Expect = 3e-59
Identities = 109/110 (99%), Positives = 110/110 (100%)
Query: 4 RASLNPSDHKLDEKLCQRLTQRYVSVMNRLQSLGYNGRVHPALTEQLVNAYGILRERPEL 63
+ASLNPSDHKLDEKLCQRLTQRYVSVMNRLQSLGYNGRVHPALTEQLVNAYGILRERPEL
Sbjct: 482 QASLNPSDHKLDEKLCQRLTQRYVSVMNRLQSLGYNGRVHPALTEQLVNAYGILRERPEL 541
Query: 64 AASEGGPYTVDFLQRVVVETVHPGMLADALLLLSCLSQLAHDDGKPMFIW 113
AASEGGPYTVDFLQRVVVETVHPGMLADALLLLSCLSQLAHDDGKPMFIW
Sbjct: 542 AASEGGPYTVDFLQRVVVETVHPGMLADALLLLSCLSQLAHDDGKPMFIW 591
>gi|218749820 hypothetical protein LOC84221 isoform 1 [Homo sapiens]
Length = 340
Score = 99.4 bits (246), Expect = 6e-22
Identities = 49/112 (43%), Positives = 75/112 (66%), Gaps = 5/112 (4%)
Query: 4 RASLNPSDHKLDEKLCQRLTQRYVSVMNRLQSLGYNGRVHPALTEQLVNAYGILRERPEL 63
+ S D +DE+ + LTQRY+++ RL+ LGY+ VHPA +E L+N YGIL++RP+L
Sbjct: 232 QTSTKSLDGSVDERKLRELTQRYLALSARLEKLGYSRDVHPAFSEFLINTYGILKQRPDL 291
Query: 64 AAS--EGGPYTVDFLQRVVVETVHPGMLADALLLLSCLSQLAHDDGKPMFIW 113
A+ P L+++V++ V P L D+LLLL+CL +L+ +DGKP+F W
Sbjct: 292 RANPLHSSPAA---LRKLVIDVVPPKFLGDSLLLLNCLCELSKEDGKPLFAW 340
>gi|23346427 hypothetical protein LOC84221 isoform 2 [Homo sapiens]
Length = 186
Score = 99.4 bits (246), Expect = 6e-22
Identities = 49/112 (43%), Positives = 75/112 (66%), Gaps = 5/112 (4%)
Query: 4 RASLNPSDHKLDEKLCQRLTQRYVSVMNRLQSLGYNGRVHPALTEQLVNAYGILRERPEL 63
+ S D +DE+ + LTQRY+++ RL+ LGY+ VHPA +E L+N YGIL++RP+L
Sbjct: 78 QTSTKSLDGSVDERKLRELTQRYLALSARLEKLGYSRDVHPAFSEFLINTYGILKQRPDL 137
Query: 64 AAS--EGGPYTVDFLQRVVVETVHPGMLADALLLLSCLSQLAHDDGKPMFIW 113
A+ P L+++V++ V P L D+LLLL+CL +L+ +DGKP+F W
Sbjct: 138 RANPLHSSPAA---LRKLVIDVVPPKFLGDSLLLLNCLCELSKEDGKPLFAW 186
>gi|5032281 dystrophin Dp427c isoform [Homo sapiens]
Length = 3677
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 60 RPELAASEGGPYTVDFLQRVVVET 83
R +L + + GPYTVD +Q+ + ET
Sbjct: 2592 RAKLESWKEGPYTVDAIQKKITET 2615
>gi|5032307 dystrophin Dp140c isoform [Homo sapiens]
Length = 1105
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 60 RPELAASEGGPYTVDFLQRVVVET 83
R +L + + GPYTVD +Q+ + ET
Sbjct: 140 RAKLESWKEGPYTVDAIQKKITET 163
>gi|5032291 dystrophin Dp260-2 isoform [Homo sapiens]
Length = 2341
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 60 RPELAASEGGPYTVDFLQRVVVET 83
R +L + + GPYTVD +Q+ + ET
Sbjct: 1256 RAKLESWKEGPYTVDAIQKKITET 1279
>gi|150036268 dystrophin Dp260-1 isoform [Homo sapiens]
Length = 2344
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 60 RPELAASEGGPYTVDFLQRVVVET 83
R +L + + GPYTVD +Q+ + ET
Sbjct: 1259 RAKLESWKEGPYTVDAIQKKITET 1282
>gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens]
Length = 3562
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 60 RPELAASEGGPYTVDFLQRVVVET 83
R +L + + GPYTVD +Q+ + ET
Sbjct: 2477 RAKLESWKEGPYTVDAIQKKITET 2500
>gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens]
Length = 3681
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 60 RPELAASEGGPYTVDFLQRVVVET 83
R +L + + GPYTVD +Q+ + ET
Sbjct: 2596 RAKLESWKEGPYTVDAIQKKITET 2619
>gi|5032313 dystrophin Dp140bc isoform [Homo sapiens]
Length = 1133
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 60 RPELAASEGGPYTVDFLQRVVVET 83
R +L + + GPYTVD +Q+ + ET
Sbjct: 140 RAKLESWKEGPYTVDAIQKKITET 163
>gi|5032311 dystrophin Dp140ab isoform [Homo sapiens]
Length = 1230
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 60 RPELAASEGGPYTVDFLQRVVVET 83
R +L + + GPYTVD +Q+ + ET
Sbjct: 140 RAKLESWKEGPYTVDAIQKKITET 163
>gi|5032309 dystrophin Dp140b isoform [Homo sapiens]
Length = 1243
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 60 RPELAASEGGPYTVDFLQRVVVET 83
R +L + + GPYTVD +Q+ + ET
Sbjct: 140 RAKLESWKEGPYTVDAIQKKITET 163
>gi|5032293 dystrophin Dp140 isoform [Homo sapiens]
Length = 1225
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 60 RPELAASEGGPYTVDFLQRVVVET 83
R +L + + GPYTVD +Q+ + ET
Sbjct: 140 RAKLESWKEGPYTVDAIQKKITET 163
>gi|5032285 dystrophin Dp427l isoform [Homo sapiens]
Length = 3562
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 60 RPELAASEGGPYTVDFLQRVVVET 83
R +L + + GPYTVD +Q+ + ET
Sbjct: 2477 RAKLESWKEGPYTVDAIQKKITET 2500
>gi|5032283 dystrophin Dp427m isoform [Homo sapiens]
Length = 3685
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 60 RPELAASEGGPYTVDFLQRVVVET 83
R +L + + GPYTVD +Q+ + ET
Sbjct: 2600 RAKLESWKEGPYTVDAIQKKITET 2623
>gi|190610002 zinc finger protein 543 [Homo sapiens]
Length = 600
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 15 DEKLCQRLTQRYVSVMNRLQSLGYNGRVHPALTEQLVNAY 54
D+ +C ++TQ+ VS L +G V AL + N+Y
Sbjct: 160 DDGVCTKITQKQVSTEGDLYECDSHGPVTDALIREEKNSY 199
>gi|45545411 NCK-associated protein 1 isoform 2 [Homo sapiens]
Length = 1134
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 3 ARASLNPSDHKLDEKLCQRLTQRYVSVMNRLQSLGYNGRVHPA 45
+R+ L PS KL EKL L R V ++ RL ++ G+V A
Sbjct: 2 SRSVLQPSQQKLAEKL-TILNDRGVGMLTRLYNIKKQGQVWKA 43
>gi|28416956 GTPase, IMAP family member 8 [Homo sapiens]
Length = 665
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 48 EQLVNAYGILRERPELAASEGGPYTVDF 75
EQ+ +LR+ L + GGPY V+F
Sbjct: 177 EQITQVLELLRKVESLVNTNGGPYHVNF 204
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,378,030
Number of Sequences: 37866
Number of extensions: 160668
Number of successful extensions: 288
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 19
length of query: 113
length of database: 18,247,518
effective HSP length: 83
effective length of query: 30
effective length of database: 15,104,640
effective search space: 453139200
effective search space used: 453139200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.