Guide to the Human Genome
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Name: LOC100292343 Sequence: fasta or formatted (113aa) NCBI GI: 239754974
Description:

PREDICTED: similar to spermatogenesis and centriole associated 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0          9           2
 C cysteine            1.8          2           1
 D aspartate           5.3          6           2
 E glutamate           6.2          7           1
 F phenylalanine       1.8          2           1
 G glycine             6.2          7           2
 H histidine           3.5          4           1
 I isoleucine          1.8          2           1
 K lysine              2.7          3           1
 L leucine            15.9         18           4
 M methionine          3.5          4           1
 N asparagine          3.5          4           1
 P proline             5.3          6           1
 Q glutamine           5.3          6           1
 R arginine            7.1          8           1
 S serine              6.2          7           1
 T threonine           3.5          4           1
 V valine              8.0          9           3
 W tryptophan          0.9          1           1
 Y tyrosine            3.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to spermatogenesis and centriole... 
SPATC1                0.971   spermatogenesis and centriole associated 1 isoform ...
C21orf56              0.363   hypothetical protein LOC84221 isoform 1 
C21orf56              0.363   hypothetical protein LOC84221 isoform 2 
DMD                   0.010   dystrophin Dp427c isoform 
DMD                   0.010   dystrophin Dp140c isoform 
DMD                   0.010   dystrophin Dp260-2 isoform 
DMD                   0.010   dystrophin Dp260-1 isoform 
DMD                   0.010   dystrophin Dp427p2 isoform 
DMD                   0.010   dystrophin Dp427p1 isoform 
DMD                   0.010   dystrophin Dp140bc isoform 
DMD                   0.010   dystrophin Dp140ab isoform 
DMD                   0.010   dystrophin Dp140b isoform 
DMD                   0.010   dystrophin Dp140 isoform 
DMD                   0.010   dystrophin Dp427l isoform 
DMD                   0.010   dystrophin Dp427m isoform 
ZNF543                0.010   zinc finger protein 543 
NCKAP1                0.010   NCK-associated protein 1 isoform 2 
GIMAP8                0.005   GTPase, IMAP family member 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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