Guide to the Human Genome
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Name: LOC100294033 Sequence: fasta or formatted (195aa) NCBI GI: 239754750
Description:

PREDICTED: similar to FAM115A protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         12           1
 C cysteine            1.5          3           1
 D aspartate           0.5          1           1
 E glutamate           9.2         18           1
 F phenylalanine       3.6          7           2
 G glycine             3.6          7           1
 H histidine           3.1          6           1
 I isoleucine          4.6          9           1
 K lysine              5.6         11           1
 L leucine            10.8         21           2
 M methionine          3.1          6           1
 N asparagine          6.7         13           1
 P proline             6.7         13           2
 Q glutamine           5.6         11           2
 R arginine            5.1         10           1
 S serine              2.6          5           1
 T threonine           6.2         12           2
 V valine              6.2         12           1
 W tryptophan          5.6         11           1
 Y tyrosine            3.6          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to FAM115A protein 
FAM115A               1.000   hypothetical protein LOC9747 
FAM115C               0.397   hypothetical protein LOC285966 B 
FAM115C               0.397   hypothetical protein LOC285966 A 
FAM115C               0.397   hypothetical protein LOC285966 A 
SERPINB3              0.013   serine (or cysteine) proteinase inhibitor, clade B (o...
ZDHHC1                0.010   zinc finger, DHHC-type containing 1 
SERPINB4              0.008   serine (or cysteine) proteinase inhibitor, clade B (...
LOC100288997          0.008   PREDICTED: hypothetical protein 
LOC100288997          0.008   PREDICTED: hypothetical protein XP_002343437 
ZNF498                0.008   zinc finger and SCAN domain containing 25 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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