Guide to the Human Genome
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Name: FAM115C Sequence: fasta or formatted (845aa) NCBI GI: 194097425
Description:

hypothetical protein LOC285966 A

Not currently referenced in the text

Other entries for this name:
alt mRNA {845aa} hypothetical protein LOC285966 A
alt prot {564aa} hypothetical protein LOC285966 B
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         78           4
 C cysteine            3.0         25           2
 D aspartate           3.4         29           2
 E glutamate           5.4         46           2
 F phenylalanine       2.4         20           1
 G glycine             9.2         78           3
 H histidine           3.3         28           1
 I isoleucine          4.0         34           2
 K lysine              3.7         31           2
 L leucine            12.1        102           3
 M methionine          1.7         14           2
 N asparagine          3.7         31           2
 P proline             6.9         58           2
 Q glutamine           4.3         36           3
 R arginine            5.0         42           2
 S serine              6.2         52           3
 T threonine           4.3         36           2
 V valine              7.3         62           3
 W tryptophan          2.5         21           3
 Y tyrosine            2.6         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC285966 A 
FAM115C               1.000   hypothetical protein LOC285966 A 
FAM115C               0.668   hypothetical protein LOC285966 B 
FAM115A               0.626   hypothetical protein LOC9747 
LOC100294033          0.091   PREDICTED: similar to FAM115A protein 
ZDHHC1                0.004   zinc finger, DHHC-type containing 1 
LOC100292536          0.003   PREDICTED: similar to zinc finger protein 607 [Homo...
LOC100291157          0.003   PREDICTED: hypothetical protein XP_002348259 
LOC100287475          0.003   PREDICTED: hypothetical protein XP_002342249 
DPH5                  0.003   diphthine synthase isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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