Guide to the Human Genome
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Search of human proteins with 239753832

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239753832 PREDICTED: hypothetical protein XP_002345793 [Homo
sapiens]
         (203 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753832 PREDICTED: hypothetical protein XP_002345793 [Homo ...   402   e-113
gi|239748395 PREDICTED: hypothetical protein XP_002346654 [Homo ...   402   e-113
gi|239742323 PREDICTED: hypothetical protein XP_002342491 [Homo ...   402   e-113
gi|156104891 general transcription factor IIF, polypeptide 1, 74...    28   4.1  
gi|24308075 RAB11 family interacting protein 5 (class I) [Homo s...    28   5.3  
gi|239758167 PREDICTED: hypothetical protein XP_002346321 [Homo ...    28   5.3  
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]            28   7.0  
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]            28   7.0  
gi|239757747 PREDICTED: similar to Serine/threonine-protein kina...    27   9.1  
gi|94557295 mitogen-activated protein kinase 8 interacting prote...    27   9.1  
gi|94557297 mitogen-activated protein kinase 8 interacting prote...    27   9.1  
gi|126131099 guanine nucleotide exchange factor p532 [Homo sapiens]    27   9.1  

>gi|239753832 PREDICTED: hypothetical protein XP_002345793 [Homo
           sapiens]
          Length = 203

 Score =  402 bits (1034), Expect = e-113
 Identities = 203/203 (100%), Positives = 203/203 (100%)

Query: 1   MSLPTSYPPFITDKILGNNGEKNHATSVSDVPIFDGATIGTGLKLAAAQQGARGAGKRRG 60
           MSLPTSYPPFITDKILGNNGEKNHATSVSDVPIFDGATIGTGLKLAAAQQGARGAGKRRG
Sbjct: 1   MSLPTSYPPFITDKILGNNGEKNHATSVSDVPIFDGATIGTGLKLAAAQQGARGAGKRRG 60

Query: 61  CELTEENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGLGQAIKGLLQVGELEVEAGRV 120
           CELTEENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGLGQAIKGLLQVGELEVEAGRV
Sbjct: 61  CELTEENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGLGQAIKGLLQVGELEVEAGRV 120

Query: 121 LLRLPVGVAALVERVPEDLLGQRDAPAHHDARHTPEFGVGLFCLVTLGDSSLTKSVSWKY 180
           LLRLPVGVAALVERVPEDLLGQRDAPAHHDARHTPEFGVGLFCLVTLGDSSLTKSVSWKY
Sbjct: 121 LLRLPVGVAALVERVPEDLLGQRDAPAHHDARHTPEFGVGLFCLVTLGDSSLTKSVSWKY 180

Query: 181 SASRSSRSFSGKCSGSASCLSRR 203
           SASRSSRSFSGKCSGSASCLSRR
Sbjct: 181 SASRSSRSFSGKCSGSASCLSRR 203


>gi|239748395 PREDICTED: hypothetical protein XP_002346654 [Homo
           sapiens]
          Length = 203

 Score =  402 bits (1034), Expect = e-113
 Identities = 203/203 (100%), Positives = 203/203 (100%)

Query: 1   MSLPTSYPPFITDKILGNNGEKNHATSVSDVPIFDGATIGTGLKLAAAQQGARGAGKRRG 60
           MSLPTSYPPFITDKILGNNGEKNHATSVSDVPIFDGATIGTGLKLAAAQQGARGAGKRRG
Sbjct: 1   MSLPTSYPPFITDKILGNNGEKNHATSVSDVPIFDGATIGTGLKLAAAQQGARGAGKRRG 60

Query: 61  CELTEENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGLGQAIKGLLQVGELEVEAGRV 120
           CELTEENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGLGQAIKGLLQVGELEVEAGRV
Sbjct: 61  CELTEENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGLGQAIKGLLQVGELEVEAGRV 120

Query: 121 LLRLPVGVAALVERVPEDLLGQRDAPAHHDARHTPEFGVGLFCLVTLGDSSLTKSVSWKY 180
           LLRLPVGVAALVERVPEDLLGQRDAPAHHDARHTPEFGVGLFCLVTLGDSSLTKSVSWKY
Sbjct: 121 LLRLPVGVAALVERVPEDLLGQRDAPAHHDARHTPEFGVGLFCLVTLGDSSLTKSVSWKY 180

Query: 181 SASRSSRSFSGKCSGSASCLSRR 203
           SASRSSRSFSGKCSGSASCLSRR
Sbjct: 181 SASRSSRSFSGKCSGSASCLSRR 203


>gi|239742323 PREDICTED: hypothetical protein XP_002342491 [Homo
           sapiens]
          Length = 203

 Score =  402 bits (1034), Expect = e-113
 Identities = 203/203 (100%), Positives = 203/203 (100%)

Query: 1   MSLPTSYPPFITDKILGNNGEKNHATSVSDVPIFDGATIGTGLKLAAAQQGARGAGKRRG 60
           MSLPTSYPPFITDKILGNNGEKNHATSVSDVPIFDGATIGTGLKLAAAQQGARGAGKRRG
Sbjct: 1   MSLPTSYPPFITDKILGNNGEKNHATSVSDVPIFDGATIGTGLKLAAAQQGARGAGKRRG 60

Query: 61  CELTEENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGLGQAIKGLLQVGELEVEAGRV 120
           CELTEENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGLGQAIKGLLQVGELEVEAGRV
Sbjct: 61  CELTEENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGLGQAIKGLLQVGELEVEAGRV 120

Query: 121 LLRLPVGVAALVERVPEDLLGQRDAPAHHDARHTPEFGVGLFCLVTLGDSSLTKSVSWKY 180
           LLRLPVGVAALVERVPEDLLGQRDAPAHHDARHTPEFGVGLFCLVTLGDSSLTKSVSWKY
Sbjct: 121 LLRLPVGVAALVERVPEDLLGQRDAPAHHDARHTPEFGVGLFCLVTLGDSSLTKSVSWKY 180

Query: 181 SASRSSRSFSGKCSGSASCLSRR 203
           SASRSSRSFSGKCSGSASCLSRR
Sbjct: 181 SASRSSRSFSGKCSGSASCLSRR 203


>gi|156104891 general transcription factor IIF, polypeptide 1, 74kDa
           [Homo sapiens]
          Length = 517

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 85  GGGARGVTRHHVEAGLGQAIKGLLQVGELEVEAGRVLLRLPVGVAALVERVPEDLLGQRD 144
           GG +RG +R    +  G +    L+    ++E G+ +  +P      ++  P+ L G + 
Sbjct: 378 GGSSRGNSRPGTPSAEGGSTSSTLRAAASKLEQGKRVSEMPAAKRLRLDTGPQSLSG-KS 436

Query: 145 APAHHDARHTPEFG 158
            P     + TP  G
Sbjct: 437 TPQPPSGKTTPNSG 450


>gi|24308075 RAB11 family interacting protein 5 (class I) [Homo
           sapiens]
          Length = 653

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 9/102 (8%)

Query: 51  GARGAGKRRGCELTEENVLGVAAPDLVVAVLVDEGGGARGVTR-------HHVEAGLGQA 103
           GA   G+  G  L E   + VA P +  +  V E  GAR   R       HH   GL ++
Sbjct: 416 GASHPGEEEGARLPEGKPVQVATPIVASSEAVAEKEGARKEERKPRMGLFHHHHQGLSRS 475

Query: 104 IKGLLQVGELEVEAGRVLLRLPVGVAALVERVPEDLLGQRDA 145
             G  +   L  + G +L   P   ++  E+      G R+A
Sbjct: 476 ELG--RRSSLGEKGGPILGASPHHSSSGEEKAKSSWFGLREA 515


>gi|239758167 PREDICTED: hypothetical protein XP_002346321 [Homo
          sapiens]
          Length = 271

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 34 FDGATIGTGLKLAAAQQGARGAGKRRGCELTEENVLGVAAPDLVVAVLVDEGGGARG 90
          F GA    G +L + ++ AR   + R     EE+ LG AA   V  + +  G G+RG
Sbjct: 7  FGGAQEAGGRRLTSRRENARAQPRGRA----EEDKLGSAAAWKVAELALPGGSGSRG 59


>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1297

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 34/108 (31%), Positives = 42/108 (38%), Gaps = 16/108 (14%)

Query: 42  GLKLAAAQQGARGAGKRRGCELTEENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGLG 101
           GL+ A  +   R AG  RG  L  + +L   AP           GGA     H + A   
Sbjct: 457 GLRGAGPEGAGRLAGPWRGLRL--QTLLLQDAPH----------GGAH---EHVLVAVPA 501

Query: 102 QAIKGLLQVGELEVEA-GRVLLRLPVGVAALVERVPEDLLGQRDAPAH 148
             + GL+  G+  V A G    RLP GV    E V     G R A  H
Sbjct: 502 TGVGGLVGAGQGAVAAAGNAPERLPAGVQGCGEEVGRGARGDRVAGGH 549


>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1297

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 34/108 (31%), Positives = 42/108 (38%), Gaps = 16/108 (14%)

Query: 42  GLKLAAAQQGARGAGKRRGCELTEENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGLG 101
           GL+ A  +   R AG  RG  L  + +L   AP           GGA     H + A   
Sbjct: 457 GLRGAGPEGAGRLAGPWRGLRL--QTLLLQDAPH----------GGAH---EHVLVAVPA 501

Query: 102 QAIKGLLQVGELEVEA-GRVLLRLPVGVAALVERVPEDLLGQRDAPAH 148
             + GL+  G+  V A G    RLP GV    E V     G R A  H
Sbjct: 502 TGVGGLVGAGQGAVAAAGNAPERLPAGVQGCGEEVGRGARGDRVAGGH 549


>gi|239757747 PREDICTED: similar to Serine/threonine-protein kinase
           PRKX (Protein kinase PKX1) [Homo sapiens]
          Length = 110

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 59  RGCELTEENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGL 100
           RGC  TEE  L +  P L V     EGG    + R    +GL
Sbjct: 13  RGC--TEERTLSLTFPGLSVPAAPREGGARSCLVRESARSGL 52


>gi|94557295 mitogen-activated protein kinase 8 interacting protein
           3 isoform 2 [Homo sapiens]
          Length = 1330

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 9/74 (12%)

Query: 54  GAGKRRGCELTE-------ENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGLGQAIKG 106
           G GK  G  L E       +N L V   DL+  V  D+  G + V R  +EA     +K 
Sbjct: 409 GMGKEVGNLLLENSQLLETKNALNVVKNDLIAKV--DQLSGEQEVLRGELEAAKQAKVKL 466

Query: 107 LLQVGELEVEAGRV 120
             ++ ELE E  RV
Sbjct: 467 ENRIKELEEELKRV 480


>gi|94557297 mitogen-activated protein kinase 8 interacting protein
           3 isoform 1 [Homo sapiens]
          Length = 1336

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 9/74 (12%)

Query: 54  GAGKRRGCELTE-------ENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGLGQAIKG 106
           G GK  G  L E       +N L V   DL+  V  D+  G + V R  +EA     +K 
Sbjct: 415 GMGKEVGNLLLENSQLLETKNALNVVKNDLIAKV--DQLSGEQEVLRGELEAAKQAKVKL 472

Query: 107 LLQVGELEVEAGRV 120
             ++ ELE E  RV
Sbjct: 473 ENRIKELEEELKRV 486


>gi|126131099 guanine nucleotide exchange factor p532 [Homo sapiens]
          Length = 4861

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/43 (37%), Positives = 20/43 (46%)

Query: 159  VGLFCLVTLGDSSLTKSVSWKYSASRSSRSFSGKCSGSASCLS 201
            V L CL   G + L+ S S   S S  SR    K +   SCL+
Sbjct: 3222 VRLMCLAAAGRAGLSTSPSAMASTSERSRGGHSKANKPISCLA 3264


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,744,835
Number of Sequences: 37866
Number of extensions: 339536
Number of successful extensions: 820
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 816
Number of HSP's gapped (non-prelim): 12
length of query: 203
length of database: 18,247,518
effective HSP length: 97
effective length of query: 106
effective length of database: 14,574,516
effective search space: 1544898696
effective search space used: 1544898696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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