Search of human proteins with 239751999

Search of human proteins with 239751999

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239751999 PREDICTED: hypothetical protein XP_002348081 [Homo
sapiens]
         (135 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239757482 PREDICTED: hypothetical protein [Homo sapiens]           278   7e-76
gi|239751999 PREDICTED: hypothetical protein XP_002348081 [Homo ...   278   7e-76
gi|239746484 PREDICTED: hypothetical protein XP_002343759 [Homo ...   278   7e-76
gi|15559209 interleukin 33 [Homo sapiens]                              28   1.7  
gi|239749645 PREDICTED: hypothetical protein [Homo sapiens]            27   3.8  
gi|4885295 G protein-coupled receptor 12 [Homo sapiens]                27   5.0  
gi|7705684 pleckstrin homology domain containing, family A (phos...    27   5.0  

>gi|239757482 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 135

 Score =  278 bits (712), Expect = 7e-76
 Identities = 135/135 (100%), Positives = 135/135 (100%)

Query: 1   MKPHAEQIQLLGKQGAAVSQLCPLVLVSGHICREERRHFQRIALTASSLSCGSQLKWHLL 60
           MKPHAEQIQLLGKQGAAVSQLCPLVLVSGHICREERRHFQRIALTASSLSCGSQLKWHLL
Sbjct: 1   MKPHAEQIQLLGKQGAAVSQLCPLVLVSGHICREERRHFQRIALTASSLSCGSQLKWHLL 60

Query: 61  QEAFPDFLPFSVLPVSWTARATDVLALSVDMACSLLPHWTGHSARAKTVFGPSLWLQLCL 120
           QEAFPDFLPFSVLPVSWTARATDVLALSVDMACSLLPHWTGHSARAKTVFGPSLWLQLCL
Sbjct: 61  QEAFPDFLPFSVLPVSWTARATDVLALSVDMACSLLPHWTGHSARAKTVFGPSLWLQLCL 120

Query: 121 AQVQAQYGCSLMFAE 135
           AQVQAQYGCSLMFAE
Sbjct: 121 AQVQAQYGCSLMFAE 135


>gi|239751999 PREDICTED: hypothetical protein XP_002348081 [Homo
           sapiens]
          Length = 135

 Score =  278 bits (712), Expect = 7e-76
 Identities = 135/135 (100%), Positives = 135/135 (100%)

Query: 1   MKPHAEQIQLLGKQGAAVSQLCPLVLVSGHICREERRHFQRIALTASSLSCGSQLKWHLL 60
           MKPHAEQIQLLGKQGAAVSQLCPLVLVSGHICREERRHFQRIALTASSLSCGSQLKWHLL
Sbjct: 1   MKPHAEQIQLLGKQGAAVSQLCPLVLVSGHICREERRHFQRIALTASSLSCGSQLKWHLL 60

Query: 61  QEAFPDFLPFSVLPVSWTARATDVLALSVDMACSLLPHWTGHSARAKTVFGPSLWLQLCL 120
           QEAFPDFLPFSVLPVSWTARATDVLALSVDMACSLLPHWTGHSARAKTVFGPSLWLQLCL
Sbjct: 61  QEAFPDFLPFSVLPVSWTARATDVLALSVDMACSLLPHWTGHSARAKTVFGPSLWLQLCL 120

Query: 121 AQVQAQYGCSLMFAE 135
           AQVQAQYGCSLMFAE
Sbjct: 121 AQVQAQYGCSLMFAE 135


>gi|239746484 PREDICTED: hypothetical protein XP_002343759 [Homo
           sapiens]
          Length = 135

 Score =  278 bits (712), Expect = 7e-76
 Identities = 135/135 (100%), Positives = 135/135 (100%)

Query: 1   MKPHAEQIQLLGKQGAAVSQLCPLVLVSGHICREERRHFQRIALTASSLSCGSQLKWHLL 60
           MKPHAEQIQLLGKQGAAVSQLCPLVLVSGHICREERRHFQRIALTASSLSCGSQLKWHLL
Sbjct: 1   MKPHAEQIQLLGKQGAAVSQLCPLVLVSGHICREERRHFQRIALTASSLSCGSQLKWHLL 60

Query: 61  QEAFPDFLPFSVLPVSWTARATDVLALSVDMACSLLPHWTGHSARAKTVFGPSLWLQLCL 120
           QEAFPDFLPFSVLPVSWTARATDVLALSVDMACSLLPHWTGHSARAKTVFGPSLWLQLCL
Sbjct: 61  QEAFPDFLPFSVLPVSWTARATDVLALSVDMACSLLPHWTGHSARAKTVFGPSLWLQLCL 120

Query: 121 AQVQAQYGCSLMFAE 135
           AQVQAQYGCSLMFAE
Sbjct: 121 AQVQAQYGCSLMFAE 135


>gi|15559209 interleukin 33 [Homo sapiens]
          Length = 270

 Score = 28.5 bits (62), Expect = 1.7
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 11 LGKQGAAVSQLCPLVLV---SGHICREERRHFQRIALTASSLSCGSQLKWHLLQEA 63
          LGK      ++CP+  +   SG + ++E  +F+R      SL  G + K HL+  A
Sbjct: 29 LGKSQQKAKEVCPMYFMKLRSGLMIKKEACYFRRETTKRPSLKTGRKHKRHLVLAA 84


>gi|239749645 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 122

 Score = 27.3 bits (59), Expect = 3.8
 Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 36  RRHFQRIALTASSLSCGSQLKWHLLQEAFPD---FLPFSVLPVSWTARATDVLALSVDMA 92
           R+  + IA  A    CG     H L   FP+   FLP          R +   A  V   
Sbjct: 38  RKALENIAGPAKPRKCGLSFVAHFLN--FPEGAKFLPAPPCTGGCEERRSGFAARKVHTF 95

Query: 93  CSLLPHWTGHSARAKTVFGPS 113
             L+ H+TG   ++K V  PS
Sbjct: 96  LVLIFHFTGSVNQSKCVCSPS 116


>gi|4885295 G protein-coupled receptor 12 [Homo sapiens]
          Length = 334

 Score = 26.9 bits (58), Expect = 5.0
 Identities = 16/51 (31%), Positives = 25/51 (49%)

Query: 58  HLLQEAFPDFLPFSVLPVSWTARATDVLALSVDMACSLLPHWTGHSARAKT 108
           +LLQ      +   ++  S++A    +LA++VD   SL    T HS R  T
Sbjct: 105 YLLQSEATKLVTIGLIVASFSASVCSLLAITVDRYLSLYYALTYHSERTVT 155


>gi|7705684 pleckstrin homology domain containing, family A
           (phosphoinositide binding specific) member 9 [Homo
           sapiens]
          Length = 391

 Score = 26.9 bits (58), Expect = 5.0
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 7/59 (11%)

Query: 25  VLVSGHICREER-----RHFQRIALTASSLSCGSQLKWHLLQEAFPDFLPFSVLPVSWT 78
           + V G I +E+R      H   ++ + S  SC  +  W   +E  P F  FS +  S++
Sbjct: 148 ITVQGEIMKEDRMENLKNHDNNLSQSGSDSSCSPECLWEEGKEVIPTF--FSTMNTSFS 204


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.134    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,091,683
Number of Sequences: 37866
Number of extensions: 185115
Number of successful extensions: 511
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 507
Number of HSP's gapped (non-prelim): 7
length of query: 135
length of database: 18,247,518
effective HSP length: 91
effective length of query: 44
effective length of database: 14,801,712
effective search space: 651275328
effective search space used: 651275328
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.