BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239751134 PREDICTED: hypothetical protein XP_002347721 isoform 1 [Homo sapiens] (115 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239756651 PREDICTED: hypothetical protein isoform 1 [Homo sap... 248 6e-67 gi|239751134 PREDICTED: hypothetical protein XP_002347721 isofor... 248 6e-67 gi|239745627 PREDICTED: hypothetical protein XP_002344146 isofor... 248 6e-67 gi|239756653 PREDICTED: hypothetical protein isoform 2 [Homo sap... 43 6e-05 gi|239751136 PREDICTED: hypothetical protein XP_002347722 isofor... 43 6e-05 gi|239745629 PREDICTED: hypothetical protein XP_002344147 isofor... 43 6e-05 gi|114326552 MON2 homolog [Homo sapiens] 27 3.5 gi|23510413 sorting nexin 26 [Homo sapiens] 27 4.5 gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo... 26 5.9 gi|239757770 PREDICTED: melanoma antigen family B, 5 [Homo sapiens] 26 7.7 gi|169216202 PREDICTED: melanoma antigen family B, 5 [Homo sapiens] 26 7.7 gi|169216811 PREDICTED: melanoma antigen family B, 5 [Homo sapiens] 26 7.7 gi|118722353 XK-related protein 5a [Homo sapiens] 26 7.7 >gi|239756651 PREDICTED: hypothetical protein isoform 1 [Homo sapiens] Length = 115 Score = 248 bits (634), Expect = 6e-67 Identities = 115/115 (100%), Positives = 115/115 (100%) Query: 1 MCPCLCHRFGGRLPMPRDQAVMPYWVPQVLRSQQQIVRRQQSLKGIQAPLLDACCWHNCW 60 MCPCLCHRFGGRLPMPRDQAVMPYWVPQVLRSQQQIVRRQQSLKGIQAPLLDACCWHNCW Sbjct: 1 MCPCLCHRFGGRLPMPRDQAVMPYWVPQVLRSQQQIVRRQQSLKGIQAPLLDACCWHNCW 60 Query: 61 RICGDECLLSKFQQLQAPYQDQLPAPAARLLPLGLLTLLQAIPRVIMAIRQCFGV 115 RICGDECLLSKFQQLQAPYQDQLPAPAARLLPLGLLTLLQAIPRVIMAIRQCFGV Sbjct: 61 RICGDECLLSKFQQLQAPYQDQLPAPAARLLPLGLLTLLQAIPRVIMAIRQCFGV 115 >gi|239751134 PREDICTED: hypothetical protein XP_002347721 isoform 1 [Homo sapiens] Length = 115 Score = 248 bits (634), Expect = 6e-67 Identities = 115/115 (100%), Positives = 115/115 (100%) Query: 1 MCPCLCHRFGGRLPMPRDQAVMPYWVPQVLRSQQQIVRRQQSLKGIQAPLLDACCWHNCW 60 MCPCLCHRFGGRLPMPRDQAVMPYWVPQVLRSQQQIVRRQQSLKGIQAPLLDACCWHNCW Sbjct: 1 MCPCLCHRFGGRLPMPRDQAVMPYWVPQVLRSQQQIVRRQQSLKGIQAPLLDACCWHNCW 60 Query: 61 RICGDECLLSKFQQLQAPYQDQLPAPAARLLPLGLLTLLQAIPRVIMAIRQCFGV 115 RICGDECLLSKFQQLQAPYQDQLPAPAARLLPLGLLTLLQAIPRVIMAIRQCFGV Sbjct: 61 RICGDECLLSKFQQLQAPYQDQLPAPAARLLPLGLLTLLQAIPRVIMAIRQCFGV 115 >gi|239745627 PREDICTED: hypothetical protein XP_002344146 isoform 1 [Homo sapiens] Length = 115 Score = 248 bits (634), Expect = 6e-67 Identities = 115/115 (100%), Positives = 115/115 (100%) Query: 1 MCPCLCHRFGGRLPMPRDQAVMPYWVPQVLRSQQQIVRRQQSLKGIQAPLLDACCWHNCW 60 MCPCLCHRFGGRLPMPRDQAVMPYWVPQVLRSQQQIVRRQQSLKGIQAPLLDACCWHNCW Sbjct: 1 MCPCLCHRFGGRLPMPRDQAVMPYWVPQVLRSQQQIVRRQQSLKGIQAPLLDACCWHNCW 60 Query: 61 RICGDECLLSKFQQLQAPYQDQLPAPAARLLPLGLLTLLQAIPRVIMAIRQCFGV 115 RICGDECLLSKFQQLQAPYQDQLPAPAARLLPLGLLTLLQAIPRVIMAIRQCFGV Sbjct: 61 RICGDECLLSKFQQLQAPYQDQLPAPAARLLPLGLLTLLQAIPRVIMAIRQCFGV 115 >gi|239756653 PREDICTED: hypothetical protein isoform 2 [Homo sapiens] Length = 158 Score = 42.7 bits (99), Expect = 6e-05 Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%) Query: 4 CLCH-RFGGRLPMPRDQAVMPYWVPQVLRSQQQ 35 C C RFGGRLP+ R +A +PYWVP LR ++Q Sbjct: 78 CECQTRFGGRLPVSRVEAALPYWVPLSLRPRKQ 110 >gi|239751136 PREDICTED: hypothetical protein XP_002347722 isoform 2 [Homo sapiens] Length = 158 Score = 42.7 bits (99), Expect = 6e-05 Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%) Query: 4 CLCH-RFGGRLPMPRDQAVMPYWVPQVLRSQQQ 35 C C RFGGRLP+ R +A +PYWVP LR ++Q Sbjct: 78 CECQTRFGGRLPVSRVEAALPYWVPLSLRPRKQ 110 >gi|239745629 PREDICTED: hypothetical protein XP_002344147 isoform 2 [Homo sapiens] Length = 158 Score = 42.7 bits (99), Expect = 6e-05 Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%) Query: 4 CLCH-RFGGRLPMPRDQAVMPYWVPQVLRSQQQ 35 C C RFGGRLP+ R +A +PYWVP LR ++Q Sbjct: 78 CECQTRFGGRLPVSRVEAALPYWVPLSLRPRKQ 110 >gi|114326552 MON2 homolog [Homo sapiens] Length = 1717 Score = 26.9 bits (58), Expect = 3.5 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 15/92 (16%) Query: 8 RFGGRLPMPRDQAVMPYWVPQVLRSQQQIVRRQQSLKGIQAPLLDACCWHNCWRI----- 62 R G+ P+PR Q V +++ + + SLK Q +D W + Sbjct: 1627 RLSGKCPLPRQQ------VTEIIFVLKAVSTLIDSLKKTQPENVDGNTWAQVIALYPTLV 1680 Query: 63 ----CGDECLLSKFQQLQAPYQDQLPAPAARL 90 C + S ++ P++D + PA+R+ Sbjct: 1681 ECITCSSSEVCSALKEALVPFKDFMQPPASRV 1712 >gi|23510413 sorting nexin 26 [Homo sapiens] Length = 1126 Score = 26.6 bits (57), Expect = 4.5 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Query: 43 LKGIQAPLLDACCWHNCWRICGDECLLSKFQQLQAPYQDQLPAPAARLLPLG 94 L+G +APL DAC C ++ G + L + P P P + L P G Sbjct: 680 LRGAEAPLTDACQQEMCSKLRGAQGPLGPDMESPLP-----PPPLSLLRPGG 726 >gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo sapiens] Length = 2517 Score = 26.2 bits (56), Expect = 5.9 Identities = 10/30 (33%), Positives = 15/30 (50%) Query: 45 GIQAPLLDACCWHNCWRICGDECLLSKFQQ 74 G L CC H C + C +E L ++ +Q Sbjct: 2078 GCDDDLPSLCCMHYCCKSCWNEYLTTRIEQ 2107 >gi|239757770 PREDICTED: melanoma antigen family B, 5 [Homo sapiens] Length = 367 Score = 25.8 bits (55), Expect = 7.7 Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 3/24 (12%) Query: 56 WHNCWRICGDECLLSKFQQLQAPY 79 WH C G +CL +KF PY Sbjct: 347 WHYC---SGQDCLRAKFSSFSQPY 367 >gi|169216202 PREDICTED: melanoma antigen family B, 5 [Homo sapiens] Length = 367 Score = 25.8 bits (55), Expect = 7.7 Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 3/24 (12%) Query: 56 WHNCWRICGDECLLSKFQQLQAPY 79 WH C G +CL +KF PY Sbjct: 347 WHYC---SGQDCLRAKFSSFSQPY 367 >gi|169216811 PREDICTED: melanoma antigen family B, 5 [Homo sapiens] Length = 367 Score = 25.8 bits (55), Expect = 7.7 Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 3/24 (12%) Query: 56 WHNCWRICGDECLLSKFQQLQAPY 79 WH C G +CL +KF PY Sbjct: 347 WHYC---SGQDCLRAKFSSFSQPY 367 >gi|118722353 XK-related protein 5a [Homo sapiens] Length = 339 Score = 25.8 bits (55), Expect = 7.7 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 5/59 (8%) Query: 50 LLDACCWHNCWRICGDECLLSKFQQLQAPYQDQLPAPAARLLPLGLL-TLLQAIPRVIM 107 LL W W D L S ++L+AP++ L A L L LL LLQ P +++ Sbjct: 73 LLQLGVWKRHW----DAALTSLQKELEAPHRGWLQLQEADLSALRLLEALLQTGPHLLL 127 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.332 0.143 0.503 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,592,440 Number of Sequences: 37866 Number of extensions: 186859 Number of successful extensions: 592 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 585 Number of HSP's gapped (non-prelim): 13 length of query: 115 length of database: 18,247,518 effective HSP length: 85 effective length of query: 30 effective length of database: 15,028,908 effective search space: 450867240 effective search space used: 450867240 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.