Guide to the Human Genome
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Search of human proteins with 239751134

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239751134 PREDICTED: hypothetical protein XP_002347721
isoform 1 [Homo sapiens]
         (115 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756651 PREDICTED: hypothetical protein isoform 1 [Homo sap...   248   6e-67
gi|239751134 PREDICTED: hypothetical protein XP_002347721 isofor...   248   6e-67
gi|239745627 PREDICTED: hypothetical protein XP_002344146 isofor...   248   6e-67
gi|239756653 PREDICTED: hypothetical protein isoform 2 [Homo sap...    43   6e-05
gi|239751136 PREDICTED: hypothetical protein XP_002347722 isofor...    43   6e-05
gi|239745629 PREDICTED: hypothetical protein XP_002344147 isofor...    43   6e-05
gi|114326552 MON2 homolog [Homo sapiens]                               27   3.5  
gi|23510413 sorting nexin 26 [Homo sapiens]                            27   4.5  
gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo...    26   5.9  
gi|239757770 PREDICTED: melanoma antigen family B, 5 [Homo sapiens]    26   7.7  
gi|169216202 PREDICTED: melanoma antigen family B, 5 [Homo sapiens]    26   7.7  
gi|169216811 PREDICTED: melanoma antigen family B, 5 [Homo sapiens]    26   7.7  
gi|118722353 XK-related protein 5a [Homo sapiens]                      26   7.7  

>gi|239756651 PREDICTED: hypothetical protein isoform 1 [Homo
           sapiens]
          Length = 115

 Score =  248 bits (634), Expect = 6e-67
 Identities = 115/115 (100%), Positives = 115/115 (100%)

Query: 1   MCPCLCHRFGGRLPMPRDQAVMPYWVPQVLRSQQQIVRRQQSLKGIQAPLLDACCWHNCW 60
           MCPCLCHRFGGRLPMPRDQAVMPYWVPQVLRSQQQIVRRQQSLKGIQAPLLDACCWHNCW
Sbjct: 1   MCPCLCHRFGGRLPMPRDQAVMPYWVPQVLRSQQQIVRRQQSLKGIQAPLLDACCWHNCW 60

Query: 61  RICGDECLLSKFQQLQAPYQDQLPAPAARLLPLGLLTLLQAIPRVIMAIRQCFGV 115
           RICGDECLLSKFQQLQAPYQDQLPAPAARLLPLGLLTLLQAIPRVIMAIRQCFGV
Sbjct: 61  RICGDECLLSKFQQLQAPYQDQLPAPAARLLPLGLLTLLQAIPRVIMAIRQCFGV 115


>gi|239751134 PREDICTED: hypothetical protein XP_002347721 isoform 1
           [Homo sapiens]
          Length = 115

 Score =  248 bits (634), Expect = 6e-67
 Identities = 115/115 (100%), Positives = 115/115 (100%)

Query: 1   MCPCLCHRFGGRLPMPRDQAVMPYWVPQVLRSQQQIVRRQQSLKGIQAPLLDACCWHNCW 60
           MCPCLCHRFGGRLPMPRDQAVMPYWVPQVLRSQQQIVRRQQSLKGIQAPLLDACCWHNCW
Sbjct: 1   MCPCLCHRFGGRLPMPRDQAVMPYWVPQVLRSQQQIVRRQQSLKGIQAPLLDACCWHNCW 60

Query: 61  RICGDECLLSKFQQLQAPYQDQLPAPAARLLPLGLLTLLQAIPRVIMAIRQCFGV 115
           RICGDECLLSKFQQLQAPYQDQLPAPAARLLPLGLLTLLQAIPRVIMAIRQCFGV
Sbjct: 61  RICGDECLLSKFQQLQAPYQDQLPAPAARLLPLGLLTLLQAIPRVIMAIRQCFGV 115


>gi|239745627 PREDICTED: hypothetical protein XP_002344146 isoform 1
           [Homo sapiens]
          Length = 115

 Score =  248 bits (634), Expect = 6e-67
 Identities = 115/115 (100%), Positives = 115/115 (100%)

Query: 1   MCPCLCHRFGGRLPMPRDQAVMPYWVPQVLRSQQQIVRRQQSLKGIQAPLLDACCWHNCW 60
           MCPCLCHRFGGRLPMPRDQAVMPYWVPQVLRSQQQIVRRQQSLKGIQAPLLDACCWHNCW
Sbjct: 1   MCPCLCHRFGGRLPMPRDQAVMPYWVPQVLRSQQQIVRRQQSLKGIQAPLLDACCWHNCW 60

Query: 61  RICGDECLLSKFQQLQAPYQDQLPAPAARLLPLGLLTLLQAIPRVIMAIRQCFGV 115
           RICGDECLLSKFQQLQAPYQDQLPAPAARLLPLGLLTLLQAIPRVIMAIRQCFGV
Sbjct: 61  RICGDECLLSKFQQLQAPYQDQLPAPAARLLPLGLLTLLQAIPRVIMAIRQCFGV 115


>gi|239756653 PREDICTED: hypothetical protein isoform 2 [Homo
           sapiens]
          Length = 158

 Score = 42.7 bits (99), Expect = 6e-05
 Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)

Query: 4   CLCH-RFGGRLPMPRDQAVMPYWVPQVLRSQQQ 35
           C C  RFGGRLP+ R +A +PYWVP  LR ++Q
Sbjct: 78  CECQTRFGGRLPVSRVEAALPYWVPLSLRPRKQ 110


>gi|239751136 PREDICTED: hypothetical protein XP_002347722 isoform 2
           [Homo sapiens]
          Length = 158

 Score = 42.7 bits (99), Expect = 6e-05
 Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)

Query: 4   CLCH-RFGGRLPMPRDQAVMPYWVPQVLRSQQQ 35
           C C  RFGGRLP+ R +A +PYWVP  LR ++Q
Sbjct: 78  CECQTRFGGRLPVSRVEAALPYWVPLSLRPRKQ 110


>gi|239745629 PREDICTED: hypothetical protein XP_002344147 isoform 2
           [Homo sapiens]
          Length = 158

 Score = 42.7 bits (99), Expect = 6e-05
 Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)

Query: 4   CLCH-RFGGRLPMPRDQAVMPYWVPQVLRSQQQ 35
           C C  RFGGRLP+ R +A +PYWVP  LR ++Q
Sbjct: 78  CECQTRFGGRLPVSRVEAALPYWVPLSLRPRKQ 110


>gi|114326552 MON2 homolog [Homo sapiens]
          Length = 1717

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 15/92 (16%)

Query: 8    RFGGRLPMPRDQAVMPYWVPQVLRSQQQIVRRQQSLKGIQAPLLDACCWHNCWRI----- 62
            R  G+ P+PR Q      V +++   + +     SLK  Q   +D   W     +     
Sbjct: 1627 RLSGKCPLPRQQ------VTEIIFVLKAVSTLIDSLKKTQPENVDGNTWAQVIALYPTLV 1680

Query: 63   ----CGDECLLSKFQQLQAPYQDQLPAPAARL 90
                C    + S  ++   P++D +  PA+R+
Sbjct: 1681 ECITCSSSEVCSALKEALVPFKDFMQPPASRV 1712


>gi|23510413 sorting nexin 26 [Homo sapiens]
          Length = 1126

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 43  LKGIQAPLLDACCWHNCWRICGDECLLSKFQQLQAPYQDQLPAPAARLLPLG 94
           L+G +APL DAC    C ++ G +  L    +   P     P P + L P G
Sbjct: 680 LRGAEAPLTDACQQEMCSKLRGAQGPLGPDMESPLP-----PPPLSLLRPGG 726


>gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo
            sapiens]
          Length = 2517

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 45   GIQAPLLDACCWHNCWRICGDECLLSKFQQ 74
            G    L   CC H C + C +E L ++ +Q
Sbjct: 2078 GCDDDLPSLCCMHYCCKSCWNEYLTTRIEQ 2107


>gi|239757770 PREDICTED: melanoma antigen family B, 5 [Homo sapiens]
          Length = 367

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 3/24 (12%)

Query: 56  WHNCWRICGDECLLSKFQQLQAPY 79
           WH C    G +CL +KF     PY
Sbjct: 347 WHYC---SGQDCLRAKFSSFSQPY 367


>gi|169216202 PREDICTED: melanoma antigen family B, 5 [Homo sapiens]
          Length = 367

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 3/24 (12%)

Query: 56  WHNCWRICGDECLLSKFQQLQAPY 79
           WH C    G +CL +KF     PY
Sbjct: 347 WHYC---SGQDCLRAKFSSFSQPY 367


>gi|169216811 PREDICTED: melanoma antigen family B, 5 [Homo sapiens]
          Length = 367

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 3/24 (12%)

Query: 56  WHNCWRICGDECLLSKFQQLQAPY 79
           WH C    G +CL +KF     PY
Sbjct: 347 WHYC---SGQDCLRAKFSSFSQPY 367


>gi|118722353 XK-related protein 5a [Homo sapiens]
          Length = 339

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 50  LLDACCWHNCWRICGDECLLSKFQQLQAPYQDQLPAPAARLLPLGLL-TLLQAIPRVIM 107
           LL    W   W    D  L S  ++L+AP++  L    A L  L LL  LLQ  P +++
Sbjct: 73  LLQLGVWKRHW----DAALTSLQKELEAPHRGWLQLQEADLSALRLLEALLQTGPHLLL 127


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.332    0.143    0.503 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,592,440
Number of Sequences: 37866
Number of extensions: 186859
Number of successful extensions: 592
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 585
Number of HSP's gapped (non-prelim): 13
length of query: 115
length of database: 18,247,518
effective HSP length: 85
effective length of query: 30
effective length of database: 15,028,908
effective search space: 450867240
effective search space used: 450867240
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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