Search of human proteins with 239750328

Search of human proteins with 239750328

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239750328 PREDICTED: hypothetical protein XP_002347384 [Homo
sapiens]
         (146 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755827 PREDICTED: hypothetical protein [Homo sapiens]           300   3e-82
gi|239750328 PREDICTED: hypothetical protein XP_002347384 [Homo ...   300   3e-82
gi|239744634 PREDICTED: hypothetical protein XP_002343228 [Homo ...   300   3e-82
gi|7662316 HIV-1 Vpr binding protein [Homo sapiens]                    28   3.6  
gi|6912246 CD3E antigen, epsilon polypeptide associated protein ...    27   4.7  
gi|4758506 basic helix-loop-helix transcription factor HAND1 [Ho...    27   6.2  
gi|22748943 hypothetical protein LOC145483 [Homo sapiens]              27   6.2  
gi|118600961 akt substrate AS250 [Homo sapiens]                        27   8.0  

>gi|239755827 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 146

 Score =  300 bits (768), Expect = 3e-82
 Identities = 146/146 (100%), Positives = 146/146 (100%)

Query: 1   MLLGRGQHRPHNAQPVPDHAYFPKGHLLGHAKRSRVHAQEEYFLGALAVASHVVAMWLPC 60
           MLLGRGQHRPHNAQPVPDHAYFPKGHLLGHAKRSRVHAQEEYFLGALAVASHVVAMWLPC
Sbjct: 1   MLLGRGQHRPHNAQPVPDHAYFPKGHLLGHAKRSRVHAQEEYFLGALAVASHVVAMWLPC 60

Query: 61  ILHGIVDDAHRLRKLQLAQLSIEPKLLLQEALSQASRAGLGLHEGTCRLMDGPQQESLGH 120
           ILHGIVDDAHRLRKLQLAQLSIEPKLLLQEALSQASRAGLGLHEGTCRLMDGPQQESLGH
Sbjct: 61  ILHGIVDDAHRLRKLQLAQLSIEPKLLLQEALSQASRAGLGLHEGTCRLMDGPQQESLGH 120

Query: 121 MSMPLLLHDRHCSSLLMRKKSKKSKM 146
           MSMPLLLHDRHCSSLLMRKKSKKSKM
Sbjct: 121 MSMPLLLHDRHCSSLLMRKKSKKSKM 146


>gi|239750328 PREDICTED: hypothetical protein XP_002347384 [Homo
           sapiens]
          Length = 146

 Score =  300 bits (768), Expect = 3e-82
 Identities = 146/146 (100%), Positives = 146/146 (100%)

Query: 1   MLLGRGQHRPHNAQPVPDHAYFPKGHLLGHAKRSRVHAQEEYFLGALAVASHVVAMWLPC 60
           MLLGRGQHRPHNAQPVPDHAYFPKGHLLGHAKRSRVHAQEEYFLGALAVASHVVAMWLPC
Sbjct: 1   MLLGRGQHRPHNAQPVPDHAYFPKGHLLGHAKRSRVHAQEEYFLGALAVASHVVAMWLPC 60

Query: 61  ILHGIVDDAHRLRKLQLAQLSIEPKLLLQEALSQASRAGLGLHEGTCRLMDGPQQESLGH 120
           ILHGIVDDAHRLRKLQLAQLSIEPKLLLQEALSQASRAGLGLHEGTCRLMDGPQQESLGH
Sbjct: 61  ILHGIVDDAHRLRKLQLAQLSIEPKLLLQEALSQASRAGLGLHEGTCRLMDGPQQESLGH 120

Query: 121 MSMPLLLHDRHCSSLLMRKKSKKSKM 146
           MSMPLLLHDRHCSSLLMRKKSKKSKM
Sbjct: 121 MSMPLLLHDRHCSSLLMRKKSKKSKM 146


>gi|239744634 PREDICTED: hypothetical protein XP_002343228 [Homo
           sapiens]
          Length = 146

 Score =  300 bits (768), Expect = 3e-82
 Identities = 146/146 (100%), Positives = 146/146 (100%)

Query: 1   MLLGRGQHRPHNAQPVPDHAYFPKGHLLGHAKRSRVHAQEEYFLGALAVASHVVAMWLPC 60
           MLLGRGQHRPHNAQPVPDHAYFPKGHLLGHAKRSRVHAQEEYFLGALAVASHVVAMWLPC
Sbjct: 1   MLLGRGQHRPHNAQPVPDHAYFPKGHLLGHAKRSRVHAQEEYFLGALAVASHVVAMWLPC 60

Query: 61  ILHGIVDDAHRLRKLQLAQLSIEPKLLLQEALSQASRAGLGLHEGTCRLMDGPQQESLGH 120
           ILHGIVDDAHRLRKLQLAQLSIEPKLLLQEALSQASRAGLGLHEGTCRLMDGPQQESLGH
Sbjct: 61  ILHGIVDDAHRLRKLQLAQLSIEPKLLLQEALSQASRAGLGLHEGTCRLMDGPQQESLGH 120

Query: 121 MSMPLLLHDRHCSSLLMRKKSKKSKM 146
           MSMPLLLHDRHCSSLLMRKKSKKSKM
Sbjct: 121 MSMPLLLHDRHCSSLLMRKKSKKSKM 146


>gi|7662316 HIV-1 Vpr binding protein [Homo sapiens]
          Length = 1507

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 9/81 (11%)

Query: 71  RLRKLQLAQLSIE-------PKLLLQEALSQASRAGLGLHEGTCRL--MDGPQQESLGHM 121
           RLR+LQL ++++        P+ L  E L       + +  G   +  +DG Q+E+ G M
Sbjct: 178 RLRELQLQEVALRQENKRPSPRKLSSEPLLPLDEEAVDMDYGDMAVDVVDGDQEEASGDM 237

Query: 122 SMPLLLHDRHCSSLLMRKKSK 142
            +   L   H +S  +   +K
Sbjct: 238 EISFHLDSGHKTSSRVNSTTK 258


>gi|6912246 CD3E antigen, epsilon polypeptide associated protein
           [Homo sapiens]
          Length = 510

 Score = 27.3 bits (59), Expect = 4.7
 Identities = 16/56 (28%), Positives = 23/56 (41%)

Query: 70  HRLRKLQLAQLSIEPKLLLQEALSQASRAGLGLHEGTCRLMDGPQQESLGHMSMPL 125
           HR R L     + E  LL     +          +GT R+++GPQQ   G    P+
Sbjct: 78  HRYRVLSSCPQAGEATLLAPSTEAGGGLTCASAPQGTLRILEGPQQSLSGSPLQPI 133


>gi|4758506 basic helix-loop-helix transcription factor HAND1
          [Homo sapiens]
          Length = 215

 Score = 26.9 bits (58), Expect = 6.2
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 2  LLGRGQHRPHNAQPVPDHAYFPKGHLLGHAKRSRVHAQEEYF 43
          L+G   H  H+  P P H    +  L G A  SR H +  YF
Sbjct: 3  LVGSYAHHHHHHHPHPAHPMLHEPFLFGPA--SRCHQERPYF 42


>gi|22748943 hypothetical protein LOC145483 [Homo sapiens]
          Length = 647

 Score = 26.9 bits (58), Expect = 6.2
 Identities = 10/16 (62%), Positives = 10/16 (62%)

Query: 8   HRPHNAQPVPDHAYFP 23
           HR   AQPVP H Y P
Sbjct: 213 HRQFRAQPVPAHVYLP 228


>gi|118600961 akt substrate AS250 [Homo sapiens]
          Length = 1873

 Score = 26.6 bits (57), Expect = 8.0
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 7/79 (8%)

Query: 12   NAQPVPDHAYFPKGHLLGHAKRSRVHAQEEYFLGALAVASHVV-------AMWLPCILHG 64
            +++PV  H+    G+LL   +  +  + E   L A  V +H+V           P ILH 
Sbjct: 1341 SSEPVQYHSSAELGNLLTVEEEKKRRSLELIPLTARMVMAHLVNHLGHYPLSGGPAILHS 1400

Query: 65   IVDDAHRLRKLQLAQLSIE 83
            +V + H    ++ ++LS E
Sbjct: 1401 LVSENHDNAHVEGSELSFE 1419


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,715,760
Number of Sequences: 37866
Number of extensions: 220013
Number of successful extensions: 509
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 504
Number of HSP's gapped (non-prelim): 8
length of query: 146
length of database: 18,247,518
effective HSP length: 92
effective length of query: 54
effective length of database: 14,763,846
effective search space: 797247684
effective search space used: 797247684
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.