Search of human proteins with 239750229

Search of human proteins with 239750229

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239750229 PREDICTED: similar to Cell division cycle 27
homolog (S. cerevisiae) [Homo sapiens]
         (70 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239758107 PREDICTED: similar to Cell division cycle 27 homolo...   150   3e-37
gi|239750229 PREDICTED: similar to Cell division cycle 27 homolo...   150   3e-37
gi|167466177 cell division cycle protein 27 isoform 1 [Homo sapi...   130   2e-31
gi|167466175 cell division cycle protein 27 isoform 2 [Homo sapi...   130   2e-31
gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens]        28   1.2  
gi|5729790 CCCTC-binding factor [Homo sapiens]                         27   2.7  
gi|29570785 CCCTC-binding factor-like protein [Homo sapiens]           27   2.7  
gi|153792259 zinc finger protein 778 [Homo sapiens]                    26   5.9  

>gi|239758107 PREDICTED: similar to Cell division cycle 27 homolog
          (S. cerevisiae) [Homo sapiens]
          Length = 70

 Score =  150 bits (378), Expect = 3e-37
 Identities = 70/70 (100%), Positives = 70/70 (100%)

Query: 1  MMVLQEPVQAAIWQALNHYAYRDGVFLAEHLHAEVHSEEAMFLLATCSYRPGKAYKAYRL 60
          MMVLQEPVQAAIWQALNHYAYRDGVFLAEHLHAEVHSEEAMFLLATCSYRPGKAYKAYRL
Sbjct: 1  MMVLQEPVQAAIWQALNHYAYRDGVFLAEHLHAEVHSEEAMFLLATCSYRPGKAYKAYRL 60

Query: 61 LKGHSCPTPQ 70
          LKGHSCPTPQ
Sbjct: 61 LKGHSCPTPQ 70


>gi|239750229 PREDICTED: similar to Cell division cycle 27 homolog
          (S. cerevisiae) [Homo sapiens]
          Length = 70

 Score =  150 bits (378), Expect = 3e-37
 Identities = 70/70 (100%), Positives = 70/70 (100%)

Query: 1  MMVLQEPVQAAIWQALNHYAYRDGVFLAEHLHAEVHSEEAMFLLATCSYRPGKAYKAYRL 60
          MMVLQEPVQAAIWQALNHYAYRDGVFLAEHLHAEVHSEEAMFLLATCSYRPGKAYKAYRL
Sbjct: 1  MMVLQEPVQAAIWQALNHYAYRDGVFLAEHLHAEVHSEEAMFLLATCSYRPGKAYKAYRL 60

Query: 61 LKGHSCPTPQ 70
          LKGHSCPTPQ
Sbjct: 61 LKGHSCPTPQ 70


>gi|167466177 cell division cycle protein 27 isoform 1 [Homo
          sapiens]
          Length = 830

 Score =  130 bits (327), Expect = 2e-31
 Identities = 62/70 (88%), Positives = 64/70 (91%)

Query: 1  MMVLQEPVQAAIWQALNHYAYRDGVFLAEHLHAEVHSEEAMFLLATCSYRPGKAYKAYRL 60
          M VLQEPVQAAIWQALNHYAYRD VFLAE L+AEVHSEEA+FLLATC YR GKAYKAYRL
Sbjct: 1  MTVLQEPVQAAIWQALNHYAYRDAVFLAERLYAEVHSEEALFLLATCYYRSGKAYKAYRL 60

Query: 61 LKGHSCPTPQ 70
          LKGHSC TPQ
Sbjct: 61 LKGHSCTTPQ 70


>gi|167466175 cell division cycle protein 27 isoform 2 [Homo
          sapiens]
          Length = 824

 Score =  130 bits (327), Expect = 2e-31
 Identities = 62/70 (88%), Positives = 64/70 (91%)

Query: 1  MMVLQEPVQAAIWQALNHYAYRDGVFLAEHLHAEVHSEEAMFLLATCSYRPGKAYKAYRL 60
          M VLQEPVQAAIWQALNHYAYRD VFLAE L+AEVHSEEA+FLLATC YR GKAYKAYRL
Sbjct: 1  MTVLQEPVQAAIWQALNHYAYRDAVFLAERLYAEVHSEEALFLLATCYYRSGKAYKAYRL 60

Query: 61 LKGHSCPTPQ 70
          LKGHSC TPQ
Sbjct: 61 LKGHSCTTPQ 70


>gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens]
          Length = 1378

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 17/49 (34%), Positives = 25/49 (51%)

Query: 15  ALNHYAYRDGVFLAEHLHAEVHSEEAMFLLATCSYRPGKAYKAYRLLKG 63
           AL +  +R  +FLAE  H       A + L T  +R G+  +A R L+G
Sbjct: 179 ALCNDYFRKSIFLAEQNHLYEDLFRARYNLGTIHWRAGQHSQAMRCLEG 227


>gi|5729790 CCCTC-binding factor [Homo sapiens]
          Length = 727

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query: 32  HAEVHSEEAMFLLATCSYRPGKAYKAYRLLKGHSCPTP 69
           H   H+ E  F  + CSY     YK  R ++ HS   P
Sbjct: 369 HIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKP 406


>gi|29570785 CCCTC-binding factor-like protein [Homo sapiens]
          Length = 663

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 13/38 (34%), Positives = 16/38 (42%)

Query: 32  HAEVHSEEAMFLLATCSYRPGKAYKAYRLLKGHSCPTP 69
           H   H+ E  F    CSY     YK  R ++ HS   P
Sbjct: 360 HVRSHTGERPFQCCQCSYASRDTYKLKRHMRTHSGEKP 397


>gi|153792259 zinc finger protein 778 [Homo sapiens]
          Length = 729

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 4/35 (11%)

Query: 30  HLHAEVHSEEAMFLLATCSYRPGKAYKAYRLLKGH 64
           H H  +H+ +  +    C    GKAY  + LLK H
Sbjct: 661 HKHGRIHTGQKPYKCKEC----GKAYNRFYLLKEH 691


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.133    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,025,199
Number of Sequences: 37866
Number of extensions: 100065
Number of successful extensions: 274
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 267
Number of HSP's gapped (non-prelim): 8
length of query: 70
length of database: 18,247,518
effective HSP length: 43
effective length of query: 27
effective length of database: 16,619,280
effective search space: 448720560
effective search space used: 448720560
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.