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Search of human proteins with 239749854
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749854 PREDICTED: hypothetical protein XP_002347188 [Homo
sapiens]
(112 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755357 PREDICTED: similar to hCG2039035 [Homo sapiens] 238 1e-63
gi|239749854 PREDICTED: hypothetical protein XP_002347188 [Homo ... 238 1e-63
gi|239744155 PREDICTED: hypothetical protein XP_002343067 [Homo ... 234 8e-63
gi|169161039 PREDICTED: hypothetical protein LOC400743 [Homo sap... 30 0.32
gi|169162103 PREDICTED: hypothetical protein LOC400743 [Homo sap... 30 0.32
gi|169162790 PREDICTED: hypothetical protein LOC400743 [Homo sap... 30 0.41
gi|13994236 cat eye syndrome chromosome region, candidate 6 isof... 29 0.71
gi|251823730 cat eye syndrome chromosome region, candidate 6 iso... 27 2.7
gi|218505680 exoribonuclease 2 isoform 1 [Homo sapiens] 27 3.5
gi|150456424 RW1 protein [Homo sapiens] 27 4.6
gi|42794622 zinc finger protein 784 [Homo sapiens] 27 4.6
gi|51468073 solute carrier family 6, member 19 [Homo sapiens] 26 6.0
gi|122056685 peptidylarginine deiminase type I [Homo sapiens] 26 6.0
gi|34486092 adenylate cyclase 5 [Homo sapiens] 26 6.0
gi|9789897 leukotriene B4 receptor 2 [Homo sapiens] 26 7.8
gi|4501867 aconitase 2, mitochondrial precursor [Homo sapiens] 26 7.8
gi|46909600 a disintegrin and metalloproteinase domain 15 isofor... 26 7.8
gi|40255178 tudor domain containing 5 [Homo sapiens] 26 7.8
gi|42475534 calsyntenin 3 [Homo sapiens] 26 7.8
>gi|239755357 PREDICTED: similar to hCG2039035 [Homo sapiens]
Length = 112
Score = 238 bits (606), Expect = 1e-63
Identities = 112/112 (100%), Positives = 112/112 (100%)
Query: 1 MTDLASGPQAFPVAVFMTLLRSSNPSHVWNHSLPDRRISWPQLMICTKPNLFWGTHQASG 60
MTDLASGPQAFPVAVFMTLLRSSNPSHVWNHSLPDRRISWPQLMICTKPNLFWGTHQASG
Sbjct: 1 MTDLASGPQAFPVAVFMTLLRSSNPSHVWNHSLPDRRISWPQLMICTKPNLFWGTHQASG 60
Query: 61 LTFSALLSLPICPGFLLVSTTGHLSEAGSPPGSCGLLPRAWREAAPTLEDDS 112
LTFSALLSLPICPGFLLVSTTGHLSEAGSPPGSCGLLPRAWREAAPTLEDDS
Sbjct: 61 LTFSALLSLPICPGFLLVSTTGHLSEAGSPPGSCGLLPRAWREAAPTLEDDS 112
>gi|239749854 PREDICTED: hypothetical protein XP_002347188 [Homo
sapiens]
Length = 112
Score = 238 bits (606), Expect = 1e-63
Identities = 112/112 (100%), Positives = 112/112 (100%)
Query: 1 MTDLASGPQAFPVAVFMTLLRSSNPSHVWNHSLPDRRISWPQLMICTKPNLFWGTHQASG 60
MTDLASGPQAFPVAVFMTLLRSSNPSHVWNHSLPDRRISWPQLMICTKPNLFWGTHQASG
Sbjct: 1 MTDLASGPQAFPVAVFMTLLRSSNPSHVWNHSLPDRRISWPQLMICTKPNLFWGTHQASG 60
Query: 61 LTFSALLSLPICPGFLLVSTTGHLSEAGSPPGSCGLLPRAWREAAPTLEDDS 112
LTFSALLSLPICPGFLLVSTTGHLSEAGSPPGSCGLLPRAWREAAPTLEDDS
Sbjct: 61 LTFSALLSLPICPGFLLVSTTGHLSEAGSPPGSCGLLPRAWREAAPTLEDDS 112
>gi|239744155 PREDICTED: hypothetical protein XP_002343067 [Homo
sapiens]
Length = 112
Score = 234 bits (598), Expect = 8e-63
Identities = 111/112 (99%), Positives = 111/112 (99%)
Query: 1 MTDLASGPQAFPVAVFMTLLRSSNPSHVWNHSLPDRRISWPQLMICTKPNLFWGTHQASG 60
MTDLASGPQAFPVAVFMTLLRSSN SHVWNHSLPDRRISWPQLMICTKPNLFWGTHQASG
Sbjct: 1 MTDLASGPQAFPVAVFMTLLRSSNSSHVWNHSLPDRRISWPQLMICTKPNLFWGTHQASG 60
Query: 61 LTFSALLSLPICPGFLLVSTTGHLSEAGSPPGSCGLLPRAWREAAPTLEDDS 112
LTFSALLSLPICPGFLLVSTTGHLSEAGSPPGSCGLLPRAWREAAPTLEDDS
Sbjct: 61 LTFSALLSLPICPGFLLVSTTGHLSEAGSPPGSCGLLPRAWREAAPTLEDDS 112
>gi|169161039 PREDICTED: hypothetical protein LOC400743 [Homo
sapiens]
Length = 190
Score = 30.4 bits (67), Expect = 0.32
Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
Query: 9 QAFPVAVFMTLLRSSNPSHVWNHSLPDRRISWPQLMICTKPNLFWGTHQASGLTFSALLS 68
Q FP+ + + L +S H SL S+P L + +LFW + L FS LLS
Sbjct: 47 QFFPLHLSLWLSQSLFAPHCLCLSL--HLSSFPGLSLSLS-SLFWAFSVSVSLFFSLLLS 103
Query: 69 LPICPGFLLVSTTGH----LSEAGSPPGSCGLLPR-AWREAAPTLEDDS 112
+ + L H LS G+P S G PR EA DD+
Sbjct: 104 VSVHFSVCLCPLHSHSPPMLSSLGAPLASLGHRPRLGCEEAGAPPSDDA 152
>gi|169162103 PREDICTED: hypothetical protein LOC400743 [Homo
sapiens]
Length = 190
Score = 30.4 bits (67), Expect = 0.32
Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
Query: 9 QAFPVAVFMTLLRSSNPSHVWNHSLPDRRISWPQLMICTKPNLFWGTHQASGLTFSALLS 68
Q FP+ + + L +S H SL S+P L + +LFW + L FS LLS
Sbjct: 47 QFFPLHLSLWLSQSLFAPHCLCLSL--HLSSFPGLSLSLS-SLFWAFSVSVSLFFSLLLS 103
Query: 69 LPICPGFLLVSTTGH----LSEAGSPPGSCGLLPR-AWREAAPTLEDDS 112
+ + L H LS G+P S G PR EA DD+
Sbjct: 104 VSVHFSVCLCPLHSHSPPMLSSLGAPLASLGHRPRLGCEEAGAPPSDDA 152
>gi|169162790 PREDICTED: hypothetical protein LOC400743 [Homo
sapiens]
Length = 190
Score = 30.0 bits (66), Expect = 0.41
Identities = 34/109 (31%), Positives = 45/109 (41%), Gaps = 8/109 (7%)
Query: 9 QAFPVAVFMTLLRSSNPSHVWNHSLPDRRISWPQLMICTKPNLFWGTHQASGLTFSALLS 68
Q FP+ + + L +S H SL S+P L + +LFW L FS LLS
Sbjct: 47 QFFPLHLSLWLSQSLFAPHCLCLSL--HLSSFPGLSLSLS-SLFWAFSVCVSLFFSLLLS 103
Query: 69 LPICPGFLLVSTTGH----LSEAGSPPGSCGLLPR-AWREAAPTLEDDS 112
+ + L H LS G+P S G PR EA DD+
Sbjct: 104 VSVHFSVCLCPLHSHSPPMLSSLGAPLASLGHRPRLGCEEAGAPPSDDA 152
>gi|13994236 cat eye syndrome chromosome region, candidate 6 isoform
a [Homo sapiens]
Length = 578
Score = 29.3 bits (64), Expect = 0.71
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 59 SGLTFSALLSLPICPGFLLVSTTGHLSEAGSPPGSCGLL 97
+G + LS+P LL S +SEAG+PPGS G L
Sbjct: 350 TGFRLTMALSVP-----LLYSLVRAISEAGAPPGSAGPL 383
>gi|251823730 cat eye syndrome chromosome region, candidate 6
isoform b [Homo sapiens]
Length = 223
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 76 LLVSTTGHLSEAGSPPGSCGLL 97
LL S +SEAG+PPGS G L
Sbjct: 7 LLYSLVRAISEAGAPPGSAGPL 28
>gi|218505680 exoribonuclease 2 isoform 1 [Homo sapiens]
Length = 691
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 40 WPQLMICTKPNLFWGTHQASGLTFSALLSLPICPGFLLVSTTGHL 84
W Q + + N +H GLTFS+ + IC L +ST L
Sbjct: 639 WEQTLQKERANSMVPSHSTGGLTFSSPETSHICDRNLSISTKNSL 683
>gi|150456424 RW1 protein [Homo sapiens]
Length = 1883
Score = 26.6 bits (57), Expect = 4.6
Identities = 25/108 (23%), Positives = 37/108 (34%), Gaps = 21/108 (19%)
Query: 22 SSNPSHVWNHSLPDRRISWP---------QLMICTKPNLFWGTHQASGLTFSALLS--LP 70
+S PS++W D SWP + + W T S +S+ LS LP
Sbjct: 1759 NSGPSYLWESPATDPSPSWPASSGSPTHTATSVLGNTSGLWSTTPFSSSIWSSNLSSALP 1818
Query: 71 ICPGFLLVSTTG----------HLSEAGSPPGSCGLLPRAWREAAPTL 108
+++ G H SP G WR +PT+
Sbjct: 1819 FTTPANTLASIGLMGTENSPAPHAPSTSSPADDLGQTYNPWRIWSPTI 1866
>gi|42794622 zinc finger protein 784 [Homo sapiens]
Length = 323
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 72 CPGFLLVSTTGHLS-EAGSPPGSCGLLPRAWREAAPTL 108
CPG S H S G P C L PRA++ AP L
Sbjct: 110 CPG--PASLRAHYSLHTGERPYRCALCPRAFKALAPLL 145
>gi|51468073 solute carrier family 6, member 19 [Homo sapiens]
Length = 634
Score = 26.2 bits (56), Expect = 6.0
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 42 QLMICTKPNLFWGTHQASGLTFSALLSLPICPGFLLVSTTGHLSEAGSPPG 92
+ MI KPN+FW Q + S LL L I F +V + L+ + PG
Sbjct: 519 EFMIGHKPNIFW---QVTWRVVSPLLMLIIFLFFFVVEVSQELTYSIWDPG 566
>gi|122056685 peptidylarginine deiminase type I [Homo sapiens]
Length = 663
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 21 RSSNP--SHVWNHSLPDRRISWPQLMICTKPNLFWGTHQ 57
RS+ P +H W SL D + P L+ C P+ + +H+
Sbjct: 160 RSAEPDLTHSWLMSLADLQDMSPMLLSCNGPDKLFDSHK 198
>gi|34486092 adenylate cyclase 5 [Homo sapiens]
Length = 1261
Score = 26.2 bits (56), Expect = 6.0
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 16/59 (27%)
Query: 30 NHSLPDRR----ISWPQLMICTKPNLFWGTHQASGLTFSALLSLPICPGFLLVSTTGHL 84
N+SL D + WP C P F T+S LLSL C FL +S G L
Sbjct: 887 NYSLGDEQGFCGSPWPN---CNFPEYF---------TYSVLLSLLACSVFLQISCIGKL 933
>gi|9789897 leukotriene B4 receptor 2 [Homo sapiens]
Length = 389
Score = 25.8 bits (55), Expect = 7.8
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 42 QLMICTKPN-----LFWGTHQASGLTF---SALLSLPICPGFLLVSTTGHLSEAGSPPGS 93
++ +C +P L W T +A+G F +ALL LP GF++ S G G P +
Sbjct: 31 RMSVCYRPPGNETLLSWKTSRATGTAFLLLAALLGLP-GNGFVVWSLAGWRPARGRPLAA 89
Query: 94 CGLLPRAWREAAPTL 108
+L A + A L
Sbjct: 90 TLVLHLALADGAVLL 104
>gi|4501867 aconitase 2, mitochondrial precursor [Homo sapiens]
Length = 780
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 52 FWGTHQASGLTFSALLSLPICPGFLLVSTTGHLSEAGSPPGSC 94
FW SG+ +L PG LL+ T H G G C
Sbjct: 165 FW--KPGSGIIHQIILENYAYPGVLLIGTDSHTPNGGGLGGIC 205
>gi|46909600 a disintegrin and metalloproteinase domain 15 isoform 6
preproprotein [Homo sapiens]
Length = 863
Score = 25.8 bits (55), Expect = 7.8
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 34 PDRRISWPQLMICTKPNLFWGTHQASGLTFSALLSLPICPGFLLVSTTGHLSEAGSPP 91
P R PQ + + GT QAS L+F A S P+ P + L++ +PP
Sbjct: 742 PSERPGPPQRALLAR-----GTKQASALSFPAPPSRPLPPDPVSKRLQAELADRPNPP 794
>gi|40255178 tudor domain containing 5 [Homo sapiens]
Length = 981
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 28 VWNHSLPDRRISWPQLMICTKPNL 51
VWN P ++ PQ IC KPNL
Sbjct: 405 VWN--CPSKKQKEPQQKICKKPNL 426
>gi|42475534 calsyntenin 3 [Homo sapiens]
Length = 956
Score = 25.8 bits (55), Expect = 7.8
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 13 VAVFMTLLRSSNPSHVWNHSLPDRRISWPQLMICTKPNLFWGTHQASGLTFSALLSLPIC 72
V V ++ R ++PSHV + R P + + +H+ S + +A L + +C
Sbjct: 798 VNVLHSMNRVAHPSHVLSSQQFLHRGHQPPPEMAG--HSLASSHRNSMIPSAATLIIVVC 855
Query: 73 PGFLLV----------STTGHLSEAGSPPGS 93
GFL++ S +S AG PPG+
Sbjct: 856 VGFLVLMVVLGLVRIHSLHRRVSGAGGPPGA 886
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,316,602
Number of Sequences: 37866
Number of extensions: 227383
Number of successful extensions: 508
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 502
Number of HSP's gapped (non-prelim): 19
length of query: 112
length of database: 18,247,518
effective HSP length: 82
effective length of query: 30
effective length of database: 15,142,506
effective search space: 454275180
effective search space used: 454275180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.