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Search of human proteins with 239749801
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749801 PREDICTED: hypothetical protein [Homo sapiens]
(77 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755308 PREDICTED: hypothetical protein [Homo sapiens] 155 5e-39
gi|239749801 PREDICTED: hypothetical protein [Homo sapiens] 155 5e-39
gi|239744092 PREDICTED: hypothetical protein XP_002343030 [Homo ... 155 5e-39
gi|239753906 PREDICTED: hypothetical protein [Homo sapiens] 73 4e-14
gi|239748450 PREDICTED: hypothetical protein [Homo sapiens] 73 4e-14
gi|239742411 PREDICTED: hypothetical protein XP_002342509 [Homo ... 73 4e-14
gi|239756499 PREDICTED: hypothetical protein [Homo sapiens] 60 3e-10
gi|239745442 PREDICTED: hypothetical protein XP_002343468 [Homo ... 60 3e-10
gi|239753701 PREDICTED: hypothetical protein [Homo sapiens] 37 0.003
gi|239748275 PREDICTED: hypothetical protein XP_002346602 [Homo ... 37 0.003
gi|239742176 PREDICTED: hypothetical protein XP_002342444 [Homo ... 37 0.003
gi|23592238 glucose transporter 14 [Homo sapiens] 30 0.55
gi|21618331 carnitine acetyltransferase precursor [Homo sapiens] 28 2.1
>gi|239755308 PREDICTED: hypothetical protein [Homo sapiens]
Length = 77
Score = 155 bits (393), Expect = 5e-39
Identities = 77/77 (100%), Positives = 77/77 (100%)
Query: 1 MVCPEFVPFDVRTCAEFLPSGGFLVSLTSRVKLQTFAVSVTAHKGGPSRVVRSSRWVSGL 60
MVCPEFVPFDVRTCAEFLPSGGFLVSLTSRVKLQTFAVSVTAHKGGPSRVVRSSRWVSGL
Sbjct: 1 MVCPEFVPFDVRTCAEFLPSGGFLVSLTSRVKLQTFAVSVTAHKGGPSRVVRSSRWVSGL 60
Query: 61 LGFRSEAADLSGESHSS 77
LGFRSEAADLSGESHSS
Sbjct: 61 LGFRSEAADLSGESHSS 77
>gi|239749801 PREDICTED: hypothetical protein [Homo sapiens]
Length = 77
Score = 155 bits (393), Expect = 5e-39
Identities = 77/77 (100%), Positives = 77/77 (100%)
Query: 1 MVCPEFVPFDVRTCAEFLPSGGFLVSLTSRVKLQTFAVSVTAHKGGPSRVVRSSRWVSGL 60
MVCPEFVPFDVRTCAEFLPSGGFLVSLTSRVKLQTFAVSVTAHKGGPSRVVRSSRWVSGL
Sbjct: 1 MVCPEFVPFDVRTCAEFLPSGGFLVSLTSRVKLQTFAVSVTAHKGGPSRVVRSSRWVSGL 60
Query: 61 LGFRSEAADLSGESHSS 77
LGFRSEAADLSGESHSS
Sbjct: 61 LGFRSEAADLSGESHSS 77
>gi|239744092 PREDICTED: hypothetical protein XP_002343030 [Homo
sapiens]
Length = 77
Score = 155 bits (393), Expect = 5e-39
Identities = 77/77 (100%), Positives = 77/77 (100%)
Query: 1 MVCPEFVPFDVRTCAEFLPSGGFLVSLTSRVKLQTFAVSVTAHKGGPSRVVRSSRWVSGL 60
MVCPEFVPFDVRTCAEFLPSGGFLVSLTSRVKLQTFAVSVTAHKGGPSRVVRSSRWVSGL
Sbjct: 1 MVCPEFVPFDVRTCAEFLPSGGFLVSLTSRVKLQTFAVSVTAHKGGPSRVVRSSRWVSGL 60
Query: 61 LGFRSEAADLSGESHSS 77
LGFRSEAADLSGESHSS
Sbjct: 61 LGFRSEAADLSGESHSS 77
>gi|239753906 PREDICTED: hypothetical protein [Homo sapiens]
Length = 129
Score = 73.2 bits (178), Expect = 4e-14
Identities = 37/51 (72%), Positives = 39/51 (76%)
Query: 1 MVCPEFVPFDVRTCAEFLPSGGFLVSLTSRVKLQTFAVSVTAHKGGPSRVV 51
MVC EFVP DVR EFLP GF+VSLTS VKLQTFAVSVT HKGG +V
Sbjct: 1 MVCLEFVPSDVRASPEFLPPSGFVVSLTSGVKLQTFAVSVTVHKGGRPELV 51
>gi|239748450 PREDICTED: hypothetical protein [Homo sapiens]
Length = 129
Score = 73.2 bits (178), Expect = 4e-14
Identities = 37/51 (72%), Positives = 39/51 (76%)
Query: 1 MVCPEFVPFDVRTCAEFLPSGGFLVSLTSRVKLQTFAVSVTAHKGGPSRVV 51
MVC EFVP DVR EFLP GF+VSLTS VKLQTFAVSVT HKGG +V
Sbjct: 1 MVCLEFVPSDVRASPEFLPPSGFVVSLTSGVKLQTFAVSVTVHKGGRPELV 51
>gi|239742411 PREDICTED: hypothetical protein XP_002342509 [Homo
sapiens]
Length = 129
Score = 73.2 bits (178), Expect = 4e-14
Identities = 37/51 (72%), Positives = 39/51 (76%)
Query: 1 MVCPEFVPFDVRTCAEFLPSGGFLVSLTSRVKLQTFAVSVTAHKGGPSRVV 51
MVC EFVP DVR EFLP GF+VSLTS VKLQTFAVSVT HKGG +V
Sbjct: 1 MVCLEFVPSDVRASPEFLPPSGFVVSLTSGVKLQTFAVSVTVHKGGRPELV 51
>gi|239756499 PREDICTED: hypothetical protein [Homo sapiens]
Length = 110
Score = 60.5 bits (145), Expect = 3e-10
Identities = 32/58 (55%), Positives = 38/58 (65%)
Query: 1 MVCPEFVPFDVRTCAEFLPSGGFLVSLTSRVKLQTFAVSVTAHKGGPSRVVRSSRWVS 58
MV P FVP DV+ EFLPSG F+VSLTSR KLQ F+ SVTAHK +++S
Sbjct: 1 MVGPGFVPSDVQMYPEFLPSGEFVVSLTSRGKLQNFSASVTAHKRSADPTSEQQQYLS 58
>gi|239745442 PREDICTED: hypothetical protein XP_002343468 [Homo
sapiens]
Length = 110
Score = 60.5 bits (145), Expect = 3e-10
Identities = 32/58 (55%), Positives = 38/58 (65%)
Query: 1 MVCPEFVPFDVRTCAEFLPSGGFLVSLTSRVKLQTFAVSVTAHKGGPSRVVRSSRWVS 58
MV P FVP DV+ EFLPSG F+VSLTSR KLQ F+ SVTAHK +++S
Sbjct: 1 MVGPGFVPSDVQMYPEFLPSGEFVVSLTSRGKLQNFSASVTAHKRSADPTSEQQQYLS 58
>gi|239753701 PREDICTED: hypothetical protein [Homo sapiens]
Length = 176
Score = 37.4 bits (85), Expect = 0.003
Identities = 26/60 (43%), Positives = 29/60 (48%), Gaps = 28/60 (46%)
Query: 14 CAEFLPSGG-------------FLVSLTSR---------------VKLQTFAVSVTAHKG 45
C+EFLPSGG F S+T+ VKLQTFAVSVTAHKG
Sbjct: 2 CSEFLPSGGLRGLAGSGVKPRTFAASVTAPKAAHLELFVPPGGFVVKLQTFAVSVTAHKG 61
>gi|239748275 PREDICTED: hypothetical protein XP_002346602 [Homo
sapiens]
Length = 176
Score = 37.4 bits (85), Expect = 0.003
Identities = 26/60 (43%), Positives = 29/60 (48%), Gaps = 28/60 (46%)
Query: 14 CAEFLPSGG-------------FLVSLTSR---------------VKLQTFAVSVTAHKG 45
C+EFLPSGG F S+T+ VKLQTFAVSVTAHKG
Sbjct: 2 CSEFLPSGGLRGLAGSGVKPRTFAASVTAPKAAHLELFVPPGGFVVKLQTFAVSVTAHKG 61
>gi|239742176 PREDICTED: hypothetical protein XP_002342444 [Homo
sapiens]
Length = 176
Score = 37.4 bits (85), Expect = 0.003
Identities = 26/60 (43%), Positives = 29/60 (48%), Gaps = 28/60 (46%)
Query: 14 CAEFLPSGG-------------FLVSLTSR---------------VKLQTFAVSVTAHKG 45
C+EFLPSGG F S+T+ VKLQTFAVSVTAHKG
Sbjct: 2 CSEFLPSGGLRGLAGSGVKPRTFAASVTAPKAAHLELFVPPGGFVVKLQTFAVSVTAHKG 61
>gi|23592238 glucose transporter 14 [Homo sapiens]
Length = 520
Score = 29.6 bits (65), Expect = 0.55
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 21 GGFLVSLTSRVKLQTFAVS 39
GGFLVSLTSR+K T AV+
Sbjct: 13 GGFLVSLTSRMKPHTLAVT 31
>gi|21618331 carnitine acetyltransferase precursor [Homo sapiens]
Length = 626
Score = 27.7 bits (60), Expect = 2.1
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 26 SLTSRVKLQTFAVSVTAHKGGPSRVVRSSRWVSGLLGFRSEAAD 69
S+T K++ +V AH+G R +R + LLG + +A +
Sbjct: 486 SVTEHQKVELLRKAVQAHRGYTDRAIRGEAFDRHLLGLKLQAIE 529
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.133 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,897,284
Number of Sequences: 37866
Number of extensions: 89355
Number of successful extensions: 142
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123
Number of HSP's gapped (non-prelim): 16
length of query: 77
length of database: 18,247,518
effective HSP length: 49
effective length of query: 28
effective length of database: 16,392,084
effective search space: 458978352
effective search space used: 458978352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.