Search of human proteins with 117938264

Search of human proteins with 117938264

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|117938264 tachykinin 4 isoform alpha-2 [Homo sapiens]
         (107 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|117938264 tachykinin 4 isoform alpha-2 [Homo sapiens]              215   7e-57
gi|117938256 tachykinin 4 isoform alpha [Homo sapiens]                208   7e-55
gi|117938258 tachykinin 4 isoform beta [Homo sapiens]                 184   1e-47
gi|117938260 tachykinin 4 isoform gamma [Homo sapiens]                163   2e-41
gi|117938262 tachykinin 4 isoform delta [Homo sapiens]                137   1e-33
gi|7770077 tachykinin 1 isoform gamma precursor [Homo sapiens]         38   0.002
gi|4507341 tachykinin 1 isoform beta precursor [Homo sapiens]          28   1.2  
gi|239756509 PREDICTED: similar to hCG1807128 [Homo sapiens]           28   1.6  
gi|239751018 PREDICTED: similar to hCG1807128 [Homo sapiens]           28   1.6  
gi|239745445 PREDICTED: similar to hCG1807128 [Homo sapiens]           28   1.6  
gi|7770079 tachykinin 1 isoform delta precursor [Homo sapiens]         27   2.7  
gi|194294556 SET binding protein 1 isoform b [Homo sapiens]            26   6.1  
gi|194294554 SET binding protein 1 isoform a [Homo sapiens]            26   6.1  
gi|71143127 IQ motif and Sec7 domain 3 [Homo sapiens]                  26   7.9  
gi|7657178 transmembrane protein 5 [Homo sapiens]                      26   7.9  

>gi|117938264 tachykinin 4 isoform alpha-2 [Homo sapiens]
          Length = 107

 Score =  215 bits (547), Expect = 7e-57
 Identities = 107/107 (100%), Positives = 107/107 (100%)

Query: 1   MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL 60
           MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL
Sbjct: 1   MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL 60

Query: 61  MGKRVGGRPLIQPRRKKAYQLEHTFQGLLGKRSLFTEGREDEAQGSE 107
           MGKRVGGRPLIQPRRKKAYQLEHTFQGLLGKRSLFTEGREDEAQGSE
Sbjct: 61  MGKRVGGRPLIQPRRKKAYQLEHTFQGLLGKRSLFTEGREDEAQGSE 107


>gi|117938256 tachykinin 4 isoform alpha [Homo sapiens]
          Length = 113

 Score =  208 bits (530), Expect = 7e-55
 Identities = 107/113 (94%), Positives = 107/113 (94%), Gaps = 6/113 (5%)

Query: 1   MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETW------EGAGPSIQLQLQEVKTGKA 54
           MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETW      EGAGPSIQLQLQEVKTGKA
Sbjct: 1   MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWVIVALEEGAGPSIQLQLQEVKTGKA 60

Query: 55  SQFFGLMGKRVGGRPLIQPRRKKAYQLEHTFQGLLGKRSLFTEGREDEAQGSE 107
           SQFFGLMGKRVGGRPLIQPRRKKAYQLEHTFQGLLGKRSLFTEGREDEAQGSE
Sbjct: 61  SQFFGLMGKRVGGRPLIQPRRKKAYQLEHTFQGLLGKRSLFTEGREDEAQGSE 113


>gi|117938258 tachykinin 4 isoform beta [Homo sapiens]
          Length = 96

 Score =  184 bits (467), Expect = 1e-47
 Identities = 96/107 (89%), Positives = 96/107 (89%), Gaps = 11/107 (10%)

Query: 1   MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL 60
           MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL
Sbjct: 1   MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL 60

Query: 61  MGKRVGGRPLIQPRRKKAYQLEHTFQGLLGKRSLFTEGREDEAQGSE 107
           MGKRVG           AYQLEHTFQGLLGKRSLFTEGREDEAQGSE
Sbjct: 61  MGKRVG-----------AYQLEHTFQGLLGKRSLFTEGREDEAQGSE 96


>gi|117938260 tachykinin 4 isoform gamma [Homo sapiens]
          Length = 87

 Score =  163 bits (413), Expect = 2e-41
 Identities = 87/107 (81%), Positives = 87/107 (81%), Gaps = 20/107 (18%)

Query: 1   MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL 60
           MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL
Sbjct: 1   MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL 60

Query: 61  MGKRVGGRPLIQPRRKKAYQLEHTFQGLLGKRSLFTEGREDEAQGSE 107
           MGKRVGGRPLIQPRRKK                    GREDEAQGSE
Sbjct: 61  MGKRVGGRPLIQPRRKK--------------------GREDEAQGSE 87


>gi|117938262 tachykinin 4 isoform delta [Homo sapiens]
          Length = 76

 Score =  137 bits (346), Expect = 1e-33
 Identities = 68/68 (100%), Positives = 68/68 (100%)

Query: 1  MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL 60
          MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL
Sbjct: 1  MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL 60

Query: 61 MGKRVGGR 68
          MGKRVGGR
Sbjct: 61 MGKRVGGR 68


>gi|7770077 tachykinin 1 isoform gamma precursor [Homo sapiens]
          Length = 114

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 53  KASQFFGLMGKRVGGRPLIQPRRKKAYQLEHTFQGLLGKRSLFTEGREDEA 103
           K  QFFGLMGKR  G   I  +R K      +F GL+GKR+L +   E  A
Sbjct: 60  KPQQFFGLMGKRDAGHGQISHKRHKT----DSFVGLMGKRALNSVAYERSA 106


>gi|4507341 tachykinin 1 isoform beta precursor [Homo sapiens]
          Length = 129

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 19/66 (28%)

Query: 53  KASQFFGLMGKR---------------VGGRPLIQPRRKKAYQLEHTFQGLLGKRSLFTE 97
           K  QFFGLMGKR               + G   I  +R K      +F GL+GKR+L + 
Sbjct: 60  KPQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHKRHKT----DSFVGLMGKRALNSV 115

Query: 98  GREDEA 103
             E  A
Sbjct: 116 AYERSA 121


>gi|239756509 PREDICTED: similar to hCG1807128 [Homo sapiens]
          Length = 143

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 12/90 (13%)

Query: 24  EEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGLMGKRVGGRPL-----IQPRRKKA 78
           EEQ+ + E + W      I   + E +     +F GL    + G  L      + RRK+ 
Sbjct: 32  EEQSDNPEEQDWPKTLSLIGGDILEEEPSSGLKFTGLPAVPLTGNDLQKQQAFEGRRKQI 91

Query: 79  YQLEHTFQGLL-------GKRSLFTEGRED 101
              + + QG+        G+R  F+EGR D
Sbjct: 92  INKKESVQGVAEVVSSVKGQREHFSEGRTD 121


>gi|239751018 PREDICTED: similar to hCG1807128 [Homo sapiens]
          Length = 143

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 12/90 (13%)

Query: 24  EEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGLMGKRVGGRPL-----IQPRRKKA 78
           EEQ+ + E + W      I   + E +     +F GL    + G  L      + RRK+ 
Sbjct: 32  EEQSDNPEEQDWPKTLSLIGGDILEEEPSSGLKFTGLPAVPLTGNDLQKQQAFEGRRKQI 91

Query: 79  YQLEHTFQGLL-------GKRSLFTEGRED 101
              + + QG+        G+R  F+EGR D
Sbjct: 92  INKKESVQGVAEVVSSVKGQREHFSEGRTD 121


>gi|239745445 PREDICTED: similar to hCG1807128 [Homo sapiens]
          Length = 143

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 12/90 (13%)

Query: 24  EEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGLMGKRVGGRPL-----IQPRRKKA 78
           EEQ+ + E + W      I   + E +     +F GL    + G  L      + RRK+ 
Sbjct: 32  EEQSDNPEEQDWPKTLSLIGGDILEEEPSSGLKFTGLPAVPLTGNDLQKQQAFEGRRKQI 91

Query: 79  YQLEHTFQGLL-------GKRSLFTEGRED 101
              + + QG+        G+R  F+EGR D
Sbjct: 92  INKKESVQGVAEVVSSVKGQREHFSEGRTD 121


>gi|7770079 tachykinin 1 isoform delta precursor [Homo sapiens]
          Length = 96

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 53 KASQFFGLMGKRVGGRPLIQPRRKKAYQ 80
          K  QFFGLMGKR  G   I    K AY+
Sbjct: 60 KPQQFFGLMGKRDAGHGQIS--HKMAYE 85


>gi|194294556 SET binding protein 1 isoform b [Homo sapiens]
          Length = 242

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 4/37 (10%)

Query: 18  VAGDGGEEQTLS-TEAETWEGAGPSIQLQLQEVKTGK 53
           VAGDG EEQ  S  EA   EG   S++L++Q  K  K
Sbjct: 81  VAGDGLEEQEFSIKEANFTEG---SLKLKIQTTKRAK 114


>gi|194294554 SET binding protein 1 isoform a [Homo sapiens]
          Length = 1596

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 4/37 (10%)

Query: 18  VAGDGGEEQTLS-TEAETWEGAGPSIQLQLQEVKTGK 53
           VAGDG EEQ  S  EA   EG   S++L++Q  K  K
Sbjct: 81  VAGDGLEEQEFSIKEANFTEG---SLKLKIQTTKRAK 114


>gi|71143127 IQ motif and Sec7 domain 3 [Homo sapiens]
          Length = 759

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 13/32 (40%), Positives = 14/32 (43%)

Query: 74  RRKKAYQLEHTFQGLLGKRSLFTEGREDEAQG 105
           R   AYQL    Q   G   L  EGR  E+ G
Sbjct: 126 RESGAYQLHQALQAAAGPPGLEAEGRAPESAG 157


>gi|7657178 transmembrane protein 5 [Homo sapiens]
          Length = 443

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 19/91 (20%)

Query: 22  GGEEQTLSTEA-ETWEGAGPSIQ-------LQLQEVKT-GKASQFFGLMGKRVGGRPLIQ 72
           G E+ TL +E    WEG   + Q       LQ+ +  T GK      + GK   G     
Sbjct: 55  GREQSTLESEEWNPWEGDEKNEQQHRFKTSLQILDKSTKGKTDLSVQIWGKAAIG----- 109

Query: 73  PRRKKAYQLEHTFQGLLGKRSLFTEGREDEA 103
                 Y  EH F+GLL    +  + RE ++
Sbjct: 110 -----LYLWEHIFEGLLDPSDVTAQWREGKS 135


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.135    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,261,072
Number of Sequences: 37866
Number of extensions: 173691
Number of successful extensions: 363
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 349
Number of HSP's gapped (non-prelim): 18
length of query: 107
length of database: 18,247,518
effective HSP length: 77
effective length of query: 30
effective length of database: 15,331,836
effective search space: 459955080
effective search space used: 459955080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.