Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 117938258
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|117938258 tachykinin 4 isoform beta [Homo sapiens]
(96 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|117938258 tachykinin 4 isoform beta [Homo sapiens] 192 4e-50
gi|117938264 tachykinin 4 isoform alpha-2 [Homo sapiens] 184 1e-47
gi|117938256 tachykinin 4 isoform alpha [Homo sapiens] 177 1e-45
gi|117938260 tachykinin 4 isoform gamma [Homo sapiens] 144 2e-35
gi|117938262 tachykinin 4 isoform delta [Homo sapiens] 141 1e-34
gi|7770077 tachykinin 1 isoform gamma precursor [Homo sapiens] 35 0.017
gi|7657178 transmembrane protein 5 [Homo sapiens] 32 0.11
gi|4507341 tachykinin 1 isoform beta precursor [Homo sapiens] 28 1.2
gi|114326552 MON2 homolog [Homo sapiens] 27 3.5
gi|71143127 IQ motif and Sec7 domain 3 [Homo sapiens] 27 3.5
gi|7770079 tachykinin 1 isoform delta precursor [Homo sapiens] 26 6.0
gi|194294556 SET binding protein 1 isoform b [Homo sapiens] 26 6.0
gi|194294554 SET binding protein 1 isoform a [Homo sapiens] 26 6.0
>gi|117938258 tachykinin 4 isoform beta [Homo sapiens]
Length = 96
Score = 192 bits (489), Expect = 4e-50
Identities = 96/96 (100%), Positives = 96/96 (100%)
Query: 1 MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL 60
MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL
Sbjct: 1 MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL 60
Query: 61 MGKRVGAYQLEHTFQGLLGKRSLFTEGREDEAQGSE 96
MGKRVGAYQLEHTFQGLLGKRSLFTEGREDEAQGSE
Sbjct: 61 MGKRVGAYQLEHTFQGLLGKRSLFTEGREDEAQGSE 96
>gi|117938264 tachykinin 4 isoform alpha-2 [Homo sapiens]
Length = 107
Score = 184 bits (467), Expect = 1e-47
Identities = 96/107 (89%), Positives = 96/107 (89%), Gaps = 11/107 (10%)
Query: 1 MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL 60
MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL
Sbjct: 1 MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL 60
Query: 61 MGKRVG-----------AYQLEHTFQGLLGKRSLFTEGREDEAQGSE 96
MGKRVG AYQLEHTFQGLLGKRSLFTEGREDEAQGSE
Sbjct: 61 MGKRVGGRPLIQPRRKKAYQLEHTFQGLLGKRSLFTEGREDEAQGSE 107
>gi|117938256 tachykinin 4 isoform alpha [Homo sapiens]
Length = 113
Score = 177 bits (450), Expect = 1e-45
Identities = 96/113 (84%), Positives = 96/113 (84%), Gaps = 17/113 (15%)
Query: 1 MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETW------EGAGPSIQLQLQEVKTGKA 54
MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETW EGAGPSIQLQLQEVKTGKA
Sbjct: 1 MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWVIVALEEGAGPSIQLQLQEVKTGKA 60
Query: 55 SQFFGLMGKRVG-----------AYQLEHTFQGLLGKRSLFTEGREDEAQGSE 96
SQFFGLMGKRVG AYQLEHTFQGLLGKRSLFTEGREDEAQGSE
Sbjct: 61 SQFFGLMGKRVGGRPLIQPRRKKAYQLEHTFQGLLGKRSLFTEGREDEAQGSE 113
>gi|117938260 tachykinin 4 isoform gamma [Homo sapiens]
Length = 87
Score = 144 bits (362), Expect = 2e-35
Identities = 78/96 (81%), Positives = 81/96 (84%), Gaps = 9/96 (9%)
Query: 1 MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL 60
MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL
Sbjct: 1 MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL 60
Query: 61 MGKRVGAYQLEHTFQGLLGKRSLFTEGREDEAQGSE 96
MGKRVG L + +R +GREDEAQGSE
Sbjct: 61 MGKRVGGRPL------IQPRRK---KGREDEAQGSE 87
>gi|117938262 tachykinin 4 isoform delta [Homo sapiens]
Length = 76
Score = 141 bits (355), Expect = 1e-34
Identities = 76/96 (79%), Positives = 76/96 (79%), Gaps = 20/96 (20%)
Query: 1 MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL 60
MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL
Sbjct: 1 MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL 60
Query: 61 MGKRVGAYQLEHTFQGLLGKRSLFTEGREDEAQGSE 96
MGKRVG GREDEAQGSE
Sbjct: 61 MGKRVG--------------------GREDEAQGSE 76
>gi|7770077 tachykinin 1 isoform gamma precursor [Homo sapiens]
Length = 114
Score = 34.7 bits (78), Expect = 0.017
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 53 KASQFFGLMGKR-VGAYQLEH------TFQGLLGKRSLFTEGREDEA 92
K QFFGLMGKR G Q+ H +F GL+GKR+L + E A
Sbjct: 60 KPQQFFGLMGKRDAGHGQISHKRHKTDSFVGLMGKRALNSVAYERSA 106
>gi|7657178 transmembrane protein 5 [Homo sapiens]
Length = 443
Score = 32.0 bits (71), Expect = 0.11
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 22 GGEEQTLSTEA-ETWEGAGPSIQ-------LQLQEVKT-GKASQFFGLMGKR-VGAYQLE 71
G E+ TL +E WEG + Q LQ+ + T GK + GK +G Y E
Sbjct: 55 GREQSTLESEEWNPWEGDEKNEQQHRFKTSLQILDKSTKGKTDLSVQIWGKAAIGLYLWE 114
Query: 72 HTFQGLLGKRSLFTEGREDEA 92
H F+GLL + + RE ++
Sbjct: 115 HIFEGLLDPSDVTAQWREGKS 135
>gi|4507341 tachykinin 1 isoform beta precursor [Homo sapiens]
Length = 129
Score = 28.5 bits (62), Expect = 1.2
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 22/62 (35%)
Query: 53 KASQFFGLMGKR----------------VGAYQLEH------TFQGLLGKRSLFTEGRED 90
K QFFGLMGKR G Q+ H +F GL+GKR+L + E
Sbjct: 60 KPQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHKRHKTDSFVGLMGKRALNSVAYER 119
Query: 91 EA 92
A
Sbjct: 120 SA 121
>gi|114326552 MON2 homolog [Homo sapiens]
Length = 1717
Score = 26.9 bits (58), Expect = 3.5
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 7 LLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGLMGKRVG 66
LL L+ + G+ GE +T + T EG+ P+ + Q++++ ++ + V
Sbjct: 492 LLDLVRGITSMIEGELGELET-ECQTTTEEGSSPTQSTEQQDLQSTSDQMDKEIVSRAVW 550
Query: 67 AYQLEHTFQGLLGKRSLFTEGREDEA 92
+ + GLL SL + DEA
Sbjct: 551 EEMVNACWCGLLAALSLLLDASTDEA 576
>gi|71143127 IQ motif and Sec7 domain 3 [Homo sapiens]
Length = 759
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 66 GAYQLEHTFQGLLGKRSLFTEGREDEAQG 94
GAYQL Q G L EGR E+ G
Sbjct: 129 GAYQLHQALQAAAGPPGLEAEGRAPESAG 157
>gi|7770079 tachykinin 1 isoform delta precursor [Homo sapiens]
Length = 96
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 53 KASQFFGLMGKR-VGAYQLEH 72
K QFFGLMGKR G Q+ H
Sbjct: 60 KPQQFFGLMGKRDAGHGQISH 80
>gi|194294556 SET binding protein 1 isoform b [Homo sapiens]
Length = 242
Score = 26.2 bits (56), Expect = 6.0
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 18 VAGDGGEEQTLS-TEAETWEGAGPSIQLQLQEVKTGK 53
VAGDG EEQ S EA EG S++L++Q K K
Sbjct: 81 VAGDGLEEQEFSIKEANFTEG---SLKLKIQTTKRAK 114
>gi|194294554 SET binding protein 1 isoform a [Homo sapiens]
Length = 1596
Score = 26.2 bits (56), Expect = 6.0
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 18 VAGDGGEEQTLS-TEAETWEGAGPSIQLQLQEVKTGK 53
VAGDG EEQ S EA EG S++L++Q K K
Sbjct: 81 VAGDGLEEQEFSIKEANFTEG---SLKLKIQTTKRAK 114
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.133 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,650,749
Number of Sequences: 37866
Number of extensions: 133456
Number of successful extensions: 205
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 15
length of query: 96
length of database: 18,247,518
effective HSP length: 67
effective length of query: 29
effective length of database: 15,710,496
effective search space: 455604384
effective search space used: 455604384
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.