Search of human proteins with 10864009

Search of human proteins with 10864009

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|10864009 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) small phosphatase 1 isoform 1 [Homo sapiens]
         (261 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|10864009 CTD (carboxy-terminal domain, RNA polymerase II, pol...   529   e-151
gi|32813443 CTD (carboxy-terminal domain, RNA polymerase II, pol...   523   e-149
gi|56549681 small CTD phosphatase 3 isoform 2 [Homo sapiens]          356   1e-98
gi|56549683 small CTD phosphatase 3 isoform 1 [Homo sapiens]          353   1e-97
gi|93004102 nuclear LIM interactor-interacting factor 2 [Homo sa...   315   3e-86
gi|100815975 CTD (carboxy-terminal domain, RNA polymerase II, po...   152   3e-37
gi|219555649 dullard homolog [Homo sapiens]                           140   9e-34
gi|31542547 dullard homolog [Homo sapiens]                            140   9e-34
gi|48526509 translocase of inner mitochondrial membrane 50 homol...    80   2e-15
gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II, pol...    45   6e-05
gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II, pol...    45   6e-05
gi|24797106 UBX domain containing 8 [Homo sapiens]                     32   0.73 
gi|5453974 protein kinase N2 [Homo sapiens]                            28   6.2  
gi|33188433 deleted in liver cancer 1 isoform 1 [Homo sapiens]         28   8.1  
gi|18699734 uridine-cytidine kinase 2 [Homo sapiens]                   28   8.1  

>gi|10864009 CTD (carboxy-terminal domain, RNA polymerase II,
           polypeptide A) small phosphatase 1 isoform 1 [Homo
           sapiens]
          Length = 261

 Score =  529 bits (1363), Expect = e-151
 Identities = 261/261 (100%), Positives = 261/261 (100%)

Query: 1   MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSGA 60
           MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSGA
Sbjct: 1   MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSGA 60

Query: 61  PLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEI 120
           PLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEI
Sbjct: 61  PLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEI 120

Query: 121 DGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRES 180
           DGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRES
Sbjct: 121 DGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRES 180

Query: 181 CVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPF 240
           CVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPF
Sbjct: 181 CVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPF 240

Query: 241 FEQLSRVDDVYSVLRQPRPGS 261
           FEQLSRVDDVYSVLRQPRPGS
Sbjct: 241 FEQLSRVDDVYSVLRQPRPGS 261


>gi|32813443 CTD (carboxy-terminal domain, RNA polymerase II,
           polypeptide A) small phosphatase 1 isoform 2 [Homo
           sapiens]
          Length = 260

 Score =  523 bits (1346), Expect = e-149
 Identities = 260/261 (99%), Positives = 260/261 (99%), Gaps = 1/261 (0%)

Query: 1   MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSGA 60
           MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSGA
Sbjct: 1   MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSGA 60

Query: 61  PLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEI 120
           PLLVEENGAIPK TPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEI
Sbjct: 61  PLLVEENGAIPK-TPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEI 119

Query: 121 DGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRES 180
           DGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRES
Sbjct: 120 DGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRES 179

Query: 181 CVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPF 240
           CVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPF
Sbjct: 180 CVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPF 239

Query: 241 FEQLSRVDDVYSVLRQPRPGS 261
           FEQLSRVDDVYSVLRQPRPGS
Sbjct: 240 FEQLSRVDDVYSVLRQPRPGS 260


>gi|56549681 small CTD phosphatase 3 isoform 2 [Homo sapiens]
          Length = 265

 Score =  356 bits (914), Expect = 1e-98
 Identities = 182/262 (69%), Positives = 211/262 (80%), Gaps = 7/262 (2%)

Query: 1   MDSSAVITQISK-EEARGPLRGKGDQKSAAS---QKPRSRGILHSLFCCVCRDDGEALPA 56
           MD  A+ITQ++  +E  G L G G++ S  +   +K RSR IL S FCC    + EA P 
Sbjct: 1   MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPP 60

Query: 57  HSGA--PLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADF 114
            S +  P LVEENG + K  P +YLLPE    D  K CVVIDLDETLVHSSFKP++NADF
Sbjct: 61  SSPSVLPPLVEENGGLQKP-PAKYLLPEVTVLDYGKKCVVIDLDETLVHSSFKPISNADF 119

Query: 115 IIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRA 174
           I+PVEIDG +HQVYVLKRPHVDEFLQRMG+LFECVLFTASLAKYADPVADLLD+WG FRA
Sbjct: 120 IVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRA 179

Query: 175 RLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTEL 234
           RLFRESCVFHRGNYVKDLSRLGR+L +V+I+DNSPASY+FHP+NAVPV SWFD+M+DTEL
Sbjct: 180 RLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTEL 239

Query: 235 HDLLPFFEQLSRVDDVYSVLRQ 256
            DL+PFFE LSR DDVYS+L +
Sbjct: 240 LDLIPFFEGLSREDDVYSMLHR 261


>gi|56549683 small CTD phosphatase 3 isoform 1 [Homo sapiens]
          Length = 276

 Score =  353 bits (905), Expect = 1e-97
 Identities = 182/272 (66%), Positives = 211/272 (77%), Gaps = 16/272 (5%)

Query: 1   MDSSAVITQISK-EEARGPLRGKGDQKSAAS---QKPRSRGILHSLFCCVCRDDGEALPA 56
           MD  A+ITQ++  +E  G L G G++ S  +   +K RSR IL S FCC    + EA P 
Sbjct: 1   MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPP 60

Query: 57  HSGA--PLLVEENGAIPK----------QTPVQYLLPEAKAQDSDKICVVIDLDETLVHS 104
            S +  P LVEENG + K            P +YLLPE    D  K CVVIDLDETLVHS
Sbjct: 61  SSPSVLPPLVEENGGLQKGDQRQVIPIPSPPAKYLLPEVTVLDYGKKCVVIDLDETLVHS 120

Query: 105 SFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVAD 164
           SFKP++NADFI+PVEIDG +HQVYVLKRPHVDEFLQRMG+LFECVLFTASLAKYADPVAD
Sbjct: 121 SFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVAD 180

Query: 165 LLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVAS 224
           LLD+WG FRARLFRESCVFHRGNYVKDLSRLGR+L +V+I+DNSPASY+FHP+NAVPV S
Sbjct: 181 LLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQS 240

Query: 225 WFDNMSDTELHDLLPFFEQLSRVDDVYSVLRQ 256
           WFD+M+DTEL DL+PFFE LSR DDVYS+L +
Sbjct: 241 WFDDMTDTELLDLIPFFEGLSREDDVYSMLHR 272


>gi|93004102 nuclear LIM interactor-interacting factor 2 [Homo
           sapiens]
          Length = 271

 Score =  315 bits (807), Expect = 3e-86
 Identities = 163/270 (60%), Positives = 195/270 (72%), Gaps = 13/270 (4%)

Query: 1   MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSGA 60
           M+  ++ITQ  +E+A   L  +G    ++ +KPR R I  +LFCC          + +  
Sbjct: 1   MEHGSIITQARREDAL-VLTKQGLVSKSSPKKPRGRNIFKALFCCFRAQHVGQSSSSTEL 59

Query: 61  PLLVEENGAIPK------------QTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKP 108
               EE   I K            Q P   LLPE   +D  +ICVVIDLDETLVHSSFKP
Sbjct: 60  AAYKEEANTIAKSDLLQCLQYQFYQIPGTCLLPEVTEEDQGRICVVIDLDETLVHSSFKP 119

Query: 109 VNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDK 168
           +NNADFI+P+EI+G  HQVYVLKRP+VDEFL+RMGELFECVLFTASLAKYADPV DLLD+
Sbjct: 120 INNADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLDR 179

Query: 169 WGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDN 228
            G FRARLFRESCVFH+G YVKDLSRLGRDLR+ LILDNSPASY+FHP+NAVPV SWFD+
Sbjct: 180 CGVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSWFDD 239

Query: 229 MSDTELHDLLPFFEQLSRVDDVYSVLRQPR 258
           M+DTEL +L+P FE+LS  +DVY+ L Q R
Sbjct: 240 MADTELLNLIPIFEELSGAEDVYTSLGQLR 269


>gi|100815975 CTD (carboxy-terminal domain, RNA polymerase II,
           polypeptide A) small phosphatase like 2 [Homo sapiens]
          Length = 466

 Score =  152 bits (384), Expect = 3e-37
 Identities = 75/167 (44%), Positives = 110/167 (65%), Gaps = 1/167 (0%)

Query: 84  KAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMG 143
           K + + +  +V+DLDETLVH S   + +A    PV    V++QVYV  RP   EFL+RM 
Sbjct: 281 KTRSTPEFSLVLDLDETLVHCSLNELEDAALTFPVLFQDVIYQVYVRLRPFFREFLERMS 340

Query: 144 ELFECVLFTASLAKYADPVADLLD-KWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRV 202
           +++E +LFTAS   YAD + ++LD K    R RLFRE CV  +GNY+KDL+ LGRDL + 
Sbjct: 341 QMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNYIKDLNILGRDLSKT 400

Query: 203 LILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLSRVDD 249
           +I+DNSP ++ +   N +P+ SWF + +D EL  L+PF E+L  +++
Sbjct: 401 IIIDNSPQAFAYQLSNGIPIESWFMDKNDNELLKLIPFLEKLVELNE 447


>gi|219555649 dullard homolog [Homo sapiens]
          Length = 244

 Score =  140 bits (354), Expect = 9e-34
 Identities = 81/179 (45%), Positives = 110/179 (61%), Gaps = 10/179 (5%)

Query: 85  AQDSDKICVVIDLDETLVHS--------SFKPVNNADFIIPVEIDGVVHQVYVLKRPHVD 136
           AQ   KI +V+DLDETL+HS        + +P    DFI+ V ID    + +V KRPHVD
Sbjct: 57  AQVKRKI-LVLDLDETLIHSHHDGVLRPTVRPGTPPDFILKVVIDKHPVRFFVHKRPHVD 115

Query: 137 EFLQRMGELFECVLFTASLAKYADPVADLLDKWGAF-RARLFRESCVFHRGNYVKDLSRL 195
            FL+ + + +E V+FTAS+  Y   VAD LD   +  + R +R+ C    G+Y+KDLS +
Sbjct: 116 FFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSYIKDLSVV 175

Query: 196 GRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLSRVDDVYSVL 254
             DL  ++ILDNSP +Y  HPDNA+P+ SWF + SDT L +LLP  + L    DV SVL
Sbjct: 176 HSDLSSIVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLPMLDALRFTADVRSVL 234


>gi|31542547 dullard homolog [Homo sapiens]
          Length = 244

 Score =  140 bits (354), Expect = 9e-34
 Identities = 81/179 (45%), Positives = 110/179 (61%), Gaps = 10/179 (5%)

Query: 85  AQDSDKICVVIDLDETLVHS--------SFKPVNNADFIIPVEIDGVVHQVYVLKRPHVD 136
           AQ   KI +V+DLDETL+HS        + +P    DFI+ V ID    + +V KRPHVD
Sbjct: 57  AQVKRKI-LVLDLDETLIHSHHDGVLRPTVRPGTPPDFILKVVIDKHPVRFFVHKRPHVD 115

Query: 137 EFLQRMGELFECVLFTASLAKYADPVADLLDKWGAF-RARLFRESCVFHRGNYVKDLSRL 195
            FL+ + + +E V+FTAS+  Y   VAD LD   +  + R +R+ C    G+Y+KDLS +
Sbjct: 116 FFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSYIKDLSVV 175

Query: 196 GRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLSRVDDVYSVL 254
             DL  ++ILDNSP +Y  HPDNA+P+ SWF + SDT L +LLP  + L    DV SVL
Sbjct: 176 HSDLSSIVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLPMLDALRFTADVRSVL 234


>gi|48526509 translocase of inner mitochondrial membrane 50 homolog
           [Homo sapiens]
          Length = 456

 Score = 80.1 bits (196), Expect = 2e-15
 Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 10/158 (6%)

Query: 107 KPVNNADFIIPVEIDGVV-HQVYVL-------KRPHVDEFLQRMGELFECVLFTASLAKY 158
           +P     + + +E+ GV+ H  + L       KRP ++   Q++  L+E V+FT+     
Sbjct: 244 EPYYQPPYTLVLELTGVLLHPEWSLATGWRFKKRPGIETLFQQLAPLYEIVIFTSETGMT 303

Query: 159 ADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDN 218
           A P+ D +D  G    RLFR++  +  G++VKD+S L RD  RV+++D    ++   P N
Sbjct: 304 AFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYN 363

Query: 219 AVPVASWFDNMSDTELHDLLPFFE--QLSRVDDVYSVL 254
            V +  W  N  D  L DL  F +   L+ V+DV +VL
Sbjct: 364 GVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVL 401


>gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II,
           polypeptide A) phosphatase, subunit 1 isoform FCP1b
           [Homo sapiens]
          Length = 867

 Score = 45.1 bits (105), Expect = 6e-05
 Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 8/134 (5%)

Query: 90  KICVVIDLDETLVHSSFKPVNNADF--IIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFE 147
           K+ +++DLD+TL+H++ +         I   ++      ++   RPH  +FL+++ +L+E
Sbjct: 182 KLVLMVDLDQTLIHTTEQHCQQMSNKGIFHFQLGRGEPMLHTRLRPHCKDFLEKIAKLYE 241

Query: 148 CVLFTASLAKYADPVADLLD-KWGAFRAR-LFRESCV--FHRGNYVKDLSRLGRDLRRVL 203
             +FT     YA  +A  LD +   F  R L R+ C+  F +   +++L   G  +  V 
Sbjct: 242 LHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRNLFPCGDSM--VC 299

Query: 204 ILDNSPASYVFHPD 217
           I+D+    + F P+
Sbjct: 300 IIDDREDVWKFAPN 313


>gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II,
           polypeptide A) phosphatase, subunit 1 isoform FCP1a
           [Homo sapiens]
          Length = 961

 Score = 45.1 bits (105), Expect = 6e-05
 Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 8/134 (5%)

Query: 90  KICVVIDLDETLVHSSFKPVNNADF--IIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFE 147
           K+ +++DLD+TL+H++ +         I   ++      ++   RPH  +FL+++ +L+E
Sbjct: 182 KLVLMVDLDQTLIHTTEQHCQQMSNKGIFHFQLGRGEPMLHTRLRPHCKDFLEKIAKLYE 241

Query: 148 CVLFTASLAKYADPVADLLD-KWGAFRAR-LFRESCV--FHRGNYVKDLSRLGRDLRRVL 203
             +FT     YA  +A  LD +   F  R L R+ C+  F +   +++L   G  +  V 
Sbjct: 242 LHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRNLFPCGDSM--VC 299

Query: 204 ILDNSPASYVFHPD 217
           I+D+    + F P+
Sbjct: 300 IIDDREDVWKFAPN 313


>gi|24797106 UBX domain containing 8 [Homo sapiens]
          Length = 445

 Score = 31.6 bits (70), Expect = 0.73
 Identities = 15/49 (30%), Positives = 28/49 (57%)

Query: 156 AKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLI 204
           ++  DPV D++    +F  +  R   VF++G Y + L+   R+LR +L+
Sbjct: 127 SRVTDPVGDIVSFMHSFEEKYGRAHPVFYQGTYSQALNDAKRELRFLLV 175


>gi|5453974 protein kinase N2 [Homo sapiens]
          Length = 984

 Score = 28.5 bits (62), Expect = 6.2
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 14/78 (17%)

Query: 47  CRDDGEALPAHSGAPLLVEENGAIPKQTPVQYLLPEAKAQD------------SDKICVV 94
           C+D  E +P  S A   V   G  P +T   ++   +K++             S+ +C V
Sbjct: 338 CQDILENVPGRSKATS-VALPGWSPSETRSSFMSRTSKSKSGSSRNLLKTDDLSNDVCAV 396

Query: 95  IDLDETLV-HSSFKPVNN 111
           + LD T+V  +S+KP++N
Sbjct: 397 LKLDNTVVGQTSWKPISN 414


>gi|33188433 deleted in liver cancer 1 isoform 1 [Homo sapiens]
          Length = 1528

 Score = 28.1 bits (61), Expect = 8.1
 Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 9/111 (8%)

Query: 50  DGEALPAHSGAPLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPV 109
           D E+    S  P  V  +G  PK T +Q +  + KA+   K     +  + L  + F   
Sbjct: 416 DTESTDLPSSTP--VANSGTKPKTTAIQGISEKEKAEIEAK-----EACDWLRATGFPQY 468

Query: 110 NNA--DFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKY 158
                DF+ P++I  V  +   L R  ++   +R+  L +C +    ++ +
Sbjct: 469 AQLYEDFLFPIDISLVKREHDFLDRDAIEALCRRLNTLNKCAVMKLEISPH 519


>gi|18699734 uridine-cytidine kinase 2 [Homo sapiens]
          Length = 261

 Score = 28.1 bits (61), Expect = 8.1
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 8/59 (13%)

Query: 147 ECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHR--GNYVKDLSRLGRDLRRVL 203
           + VLF   LA Y+  V DL      F+ +LF ++    R     ++D+S  GRDL ++L
Sbjct: 130 DVVLFEGILAFYSQEVRDL------FQMKLFVDTDADTRLSRRVLRDISERGRDLEQIL 182


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.138    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,539,381
Number of Sequences: 37866
Number of extensions: 484483
Number of successful extensions: 1000
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 977
Number of HSP's gapped (non-prelim): 15
length of query: 261
length of database: 18,247,518
effective HSP length: 100
effective length of query: 161
effective length of database: 14,460,918
effective search space: 2328207798
effective search space used: 2328207798
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.