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Search of human proteins with 239748587
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748587 PREDICTED: hypothetical protein XP_002346734 [Homo
sapiens]
(277 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754060 PREDICTED: hypothetical protein [Homo sapiens] 578 e-165
gi|239748587 PREDICTED: hypothetical protein XP_002346734 [Homo ... 578 e-165
gi|239742606 PREDICTED: hypothetical protein XP_002342570 [Homo ... 571 e-163
gi|239757324 PREDICTED: hypothetical protein XP_002345241 [Homo ... 34 0.16
gi|239751831 PREDICTED: hypothetical protein XP_002348009 [Homo ... 34 0.16
gi|239746322 PREDICTED: hypothetical protein XP_002343729 [Homo ... 34 0.16
gi|217416343 fibrosin-like 1 [Homo sapiens] 31 1.4
gi|239755402 PREDICTED: hypothetical protein [Homo sapiens] 30 1.8
gi|239749910 PREDICTED: hypothetical protein XP_002347211 [Homo ... 30 1.8
gi|239744211 PREDICTED: hypothetical protein XP_002343075 [Homo ... 30 1.8
gi|253970412 G-2 and S-phase expressed 1 [Homo sapiens] 30 3.0
gi|38045890 CUB and Sushi multiple domains 3 isoform 2 [Homo sap... 29 5.2
gi|205277354 CUB and Sushi multiple domains 3 isoform 3 [Homo sa... 29 5.2
gi|38045888 CUB and Sushi multiple domains 3 isoform 1 [Homo sap... 29 5.2
gi|148231468 GDNF family receptor alpha like [Homo sapiens] 28 8.8
>gi|239754060 PREDICTED: hypothetical protein [Homo sapiens]
Length = 277
Score = 578 bits (1490), Expect = e-165
Identities = 277/277 (100%), Positives = 277/277 (100%)
Query: 1 MTGRDVQGRNEDGLLHDIQRDGDQQNQQPYCQGDANGNVCLLPGVPHGVHDDPIPLHTEA 60
MTGRDVQGRNEDGLLHDIQRDGDQQNQQPYCQGDANGNVCLLPGVPHGVHDDPIPLHTEA
Sbjct: 1 MTGRDVQGRNEDGLLHDIQRDGDQQNQQPYCQGDANGNVCLLPGVPHGVHDDPIPLHTEA 60
Query: 61 GHEENGTVHVAIEKANKHITKSFPINPVVAMYVIGNLQGEPDDREEVSQGQIGHVNHSRV 120
GHEENGTVHVAIEKANKHITKSFPINPVVAMYVIGNLQGEPDDREEVSQGQIGHVNHSRV
Sbjct: 61 GHEENGTVHVAIEKANKHITKSFPINPVVAMYVIGNLQGEPDDREEVSQGQIGHVNHSRV 120
Query: 121 LLLSSEKKDPQGHAVTWQTHHKHNCVDNWKEDSGQFSSEDRCRKLIHRKDCFNCNSFSSD 180
LLLSSEKKDPQGHAVTWQTHHKHNCVDNWKEDSGQFSSEDRCRKLIHRKDCFNCNSFSSD
Sbjct: 121 LLLSSEKKDPQGHAVTWQTHHKHNCVDNWKEDSGQFSSEDRCRKLIHRKDCFNCNSFSSD 180
Query: 181 VGCAINLTNKASSFRGSIGFSPWMVPLQEREAASRMAAPSSHAALGLRILLEAPTPGARG 240
VGCAINLTNKASSFRGSIGFSPWMVPLQEREAASRMAAPSSHAALGLRILLEAPTPGARG
Sbjct: 181 VGCAINLTNKASSFRGSIGFSPWMVPLQEREAASRMAAPSSHAALGLRILLEAPTPGARG 240
Query: 241 IRRHRFETQSSTGRTERKSASHLPRIGASAARLPRAG 277
IRRHRFETQSSTGRTERKSASHLPRIGASAARLPRAG
Sbjct: 241 IRRHRFETQSSTGRTERKSASHLPRIGASAARLPRAG 277
>gi|239748587 PREDICTED: hypothetical protein XP_002346734 [Homo
sapiens]
Length = 277
Score = 578 bits (1490), Expect = e-165
Identities = 277/277 (100%), Positives = 277/277 (100%)
Query: 1 MTGRDVQGRNEDGLLHDIQRDGDQQNQQPYCQGDANGNVCLLPGVPHGVHDDPIPLHTEA 60
MTGRDVQGRNEDGLLHDIQRDGDQQNQQPYCQGDANGNVCLLPGVPHGVHDDPIPLHTEA
Sbjct: 1 MTGRDVQGRNEDGLLHDIQRDGDQQNQQPYCQGDANGNVCLLPGVPHGVHDDPIPLHTEA 60
Query: 61 GHEENGTVHVAIEKANKHITKSFPINPVVAMYVIGNLQGEPDDREEVSQGQIGHVNHSRV 120
GHEENGTVHVAIEKANKHITKSFPINPVVAMYVIGNLQGEPDDREEVSQGQIGHVNHSRV
Sbjct: 61 GHEENGTVHVAIEKANKHITKSFPINPVVAMYVIGNLQGEPDDREEVSQGQIGHVNHSRV 120
Query: 121 LLLSSEKKDPQGHAVTWQTHHKHNCVDNWKEDSGQFSSEDRCRKLIHRKDCFNCNSFSSD 180
LLLSSEKKDPQGHAVTWQTHHKHNCVDNWKEDSGQFSSEDRCRKLIHRKDCFNCNSFSSD
Sbjct: 121 LLLSSEKKDPQGHAVTWQTHHKHNCVDNWKEDSGQFSSEDRCRKLIHRKDCFNCNSFSSD 180
Query: 181 VGCAINLTNKASSFRGSIGFSPWMVPLQEREAASRMAAPSSHAALGLRILLEAPTPGARG 240
VGCAINLTNKASSFRGSIGFSPWMVPLQEREAASRMAAPSSHAALGLRILLEAPTPGARG
Sbjct: 181 VGCAINLTNKASSFRGSIGFSPWMVPLQEREAASRMAAPSSHAALGLRILLEAPTPGARG 240
Query: 241 IRRHRFETQSSTGRTERKSASHLPRIGASAARLPRAG 277
IRRHRFETQSSTGRTERKSASHLPRIGASAARLPRAG
Sbjct: 241 IRRHRFETQSSTGRTERKSASHLPRIGASAARLPRAG 277
>gi|239742606 PREDICTED: hypothetical protein XP_002342570 [Homo
sapiens]
Length = 277
Score = 571 bits (1472), Expect = e-163
Identities = 274/277 (98%), Positives = 275/277 (99%)
Query: 1 MTGRDVQGRNEDGLLHDIQRDGDQQNQQPYCQGDANGNVCLLPGVPHGVHDDPIPLHTEA 60
MTGRDVQGRNEDGLLHDIQR+GDQQNQQPYCQGDANGNVCLLPGVPHGVHDDPIPLHTEA
Sbjct: 1 MTGRDVQGRNEDGLLHDIQRNGDQQNQQPYCQGDANGNVCLLPGVPHGVHDDPIPLHTEA 60
Query: 61 GHEENGTVHVAIEKANKHITKSFPINPVVAMYVIGNLQGEPDDREEVSQGQIGHVNHSRV 120
GHEENGTVHVAIEKANKHITKSFPINPVVAMYVIGNLQGEPDDREEVSQGQIGHVNHSRV
Sbjct: 61 GHEENGTVHVAIEKANKHITKSFPINPVVAMYVIGNLQGEPDDREEVSQGQIGHVNHSRV 120
Query: 121 LLLSSEKKDPQGHAVTWQTHHKHNCVDNWKEDSGQFSSEDRCRKLIHRKDCFNCNSFSSD 180
LLLSSEKKDPQGHAVTWQTHHKHNCVDNWKEDSGQFSSEDRCRKLIHRKDCFNCNSFSSD
Sbjct: 121 LLLSSEKKDPQGHAVTWQTHHKHNCVDNWKEDSGQFSSEDRCRKLIHRKDCFNCNSFSSD 180
Query: 181 VGCAINLTNKASSFRGSIGFSPWMVPLQEREAASRMAAPSSHAALGLRILLEAPTPGARG 240
VGCAINLTNKASSFRGS GFSPWMVPLQEREAASRMAAPSSHAALGLRILLEAPTPGARG
Sbjct: 181 VGCAINLTNKASSFRGSTGFSPWMVPLQEREAASRMAAPSSHAALGLRILLEAPTPGARG 240
Query: 241 IRRHRFETQSSTGRTERKSASHLPRIGASAARLPRAG 277
IRR RFETQSSTGRTERKSASHLPRIGASAARLPRAG
Sbjct: 241 IRRRRFETQSSTGRTERKSASHLPRIGASAARLPRAG 277
>gi|239757324 PREDICTED: hypothetical protein XP_002345241 [Homo
sapiens]
Length = 582
Score = 33.9 bits (76), Expect = 0.16
Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 6/124 (4%)
Query: 46 PHGVHDDPIPLHTEAGHEENGTVHVAIEKANKHITKSFPINPVVAMYVIGNLQGEPDDRE 105
P G + + G E++ VHV ++ + PVV +Y G+ E
Sbjct: 382 PDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAKGPVVMLYNGREQDGQRQAGE 441
Query: 106 EVSQGQIGHVNHSRVLLLSSEKKDPQGHAVTWQTHHKHNCVDNWKEDSGQ-FSSEDRCRK 164
EV Q+ + L E + P + +H + +C K+D GQ + R R
Sbjct: 442 EVGYRQVEEPDGIDG-PLGLECRHPDHQGIAQHSHQEDDC----KDDQGQDVWNTQRVRS 496
Query: 165 LIHR 168
IHR
Sbjct: 497 FIHR 500
>gi|239751831 PREDICTED: hypothetical protein XP_002348009 [Homo
sapiens]
Length = 589
Score = 33.9 bits (76), Expect = 0.16
Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 6/124 (4%)
Query: 46 PHGVHDDPIPLHTEAGHEENGTVHVAIEKANKHITKSFPINPVVAMYVIGNLQGEPDDRE 105
P G + + G E++ VHV ++ + PVV +Y G+ E
Sbjct: 389 PDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAKGPVVMLYNGREQDGQRQAGE 448
Query: 106 EVSQGQIGHVNHSRVLLLSSEKKDPQGHAVTWQTHHKHNCVDNWKEDSGQ-FSSEDRCRK 164
EV Q+ + L E + P + +H + +C K+D GQ + R R
Sbjct: 449 EVGYRQVEEPDGIDG-PLGLECRHPDHQGIAQHSHQEDDC----KDDQGQDVWNTQRVRS 503
Query: 165 LIHR 168
IHR
Sbjct: 504 FIHR 507
>gi|239746322 PREDICTED: hypothetical protein XP_002343729 [Homo
sapiens]
Length = 221
Score = 33.9 bits (76), Expect = 0.16
Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 6/124 (4%)
Query: 46 PHGVHDDPIPLHTEAGHEENGTVHVAIEKANKHITKSFPINPVVAMYVIGNLQGEPDDRE 105
P G + + G E++ VHV ++ + PVV +Y G+ E
Sbjct: 21 PDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAKGPVVMLYNGREQDGQRQAGE 80
Query: 106 EVSQGQIGHVNHSRVLLLSSEKKDPQGHAVTWQTHHKHNCVDNWKEDSGQ-FSSEDRCRK 164
EV Q+ + L E + P + +H + +C K+D GQ + R R
Sbjct: 81 EVGYRQVEEPDGIDG-PLGLECRHPDHQGIAQHSHQEDDC----KDDQGQDVWNTQRVRS 135
Query: 165 LIHR 168
IHR
Sbjct: 136 FIHR 139
>gi|217416343 fibrosin-like 1 [Homo sapiens]
Length = 1045
Score = 30.8 bits (68), Expect = 1.4
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 215 RMAAPSSHAALGLRILLEAPTPGARGIRRHRFETQSSTGRTERKSASHLPRIGAS--AAR 272
R A P++ A G LLE P R H + + G ER A HLP + A
Sbjct: 905 RRAFPAAAPAPGSAALLEPPERPYRDREPHGYSPERLRGELERARAPHLPPAAPALDGAL 964
Query: 273 LPRAG 277
LP G
Sbjct: 965 LPSLG 969
>gi|239755402 PREDICTED: hypothetical protein [Homo sapiens]
Length = 321
Score = 30.4 bits (67), Expect = 1.8
Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 1/103 (0%)
Query: 46 PHGVHDDPIPLHTEAGHEENGTVHVAIEKANKHITKSFPINPVVAMYVIGNLQGEPDD-R 104
P VH + +H + G E+ + + + ++ +P + IG +
Sbjct: 168 PQRVHQHDVAVHCDGGEREHRHIDGDRLQEEDQVAQAAAEHPAAWLEGIGQRERHAGGAH 227
Query: 105 EEVSQGQIGHVNHSRVLLLSSEKKDPQGHAVTWQTHHKHNCVD 147
E V QGQ+ V+ + + AV Q H H+ V+
Sbjct: 228 EHVGQGQVADEEVRHVVQPAHPRDHQHQQAVAHQPHDHHDAVE 270
>gi|239749910 PREDICTED: hypothetical protein XP_002347211 [Homo
sapiens]
Length = 321
Score = 30.4 bits (67), Expect = 1.8
Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 1/103 (0%)
Query: 46 PHGVHDDPIPLHTEAGHEENGTVHVAIEKANKHITKSFPINPVVAMYVIGNLQGEPDD-R 104
P VH + +H + G E+ + + + ++ +P + IG +
Sbjct: 168 PQRVHQHDVAVHCDGGEREHRHIDGDRLQEEDQVAQAAAEHPAAWLEGIGQRERHAGGAH 227
Query: 105 EEVSQGQIGHVNHSRVLLLSSEKKDPQGHAVTWQTHHKHNCVD 147
E V QGQ+ V+ + + AV Q H H+ V+
Sbjct: 228 EHVGQGQVADEEVRHVVQPAHPRDHQHQQAVAHQPHDHHDAVE 270
>gi|239744211 PREDICTED: hypothetical protein XP_002343075 [Homo
sapiens]
Length = 321
Score = 30.4 bits (67), Expect = 1.8
Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 1/103 (0%)
Query: 46 PHGVHDDPIPLHTEAGHEENGTVHVAIEKANKHITKSFPINPVVAMYVIGNLQGEPDD-R 104
P VH + +H + G E+ + + + ++ +P + IG +
Sbjct: 168 PQRVHQHDVAVHCDGGEREHRHIDGDRLQEEDQVAQAAAEHPAAWLEGIGQRERHAGGAH 227
Query: 105 EEVSQGQIGHVNHSRVLLLSSEKKDPQGHAVTWQTHHKHNCVD 147
E V QGQ+ V+ + + AV Q H H+ V+
Sbjct: 228 EHVGQGQVADEEVRHVVQPAHPRDHQHQQAVAHQPHDHHDAVE 270
>gi|253970412 G-2 and S-phase expressed 1 [Homo sapiens]
Length = 739
Score = 29.6 bits (65), Expect = 3.0
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 204 MVPLQEREAASRMAAPSSHAALGLRILLEAPTPGARGIRRHRFETQSSTGRTERKSASHL 263
++P + A + A SH G R + P P G+++ + ST RKS+S
Sbjct: 278 VLPDKPAPGAVNVPAAGSHLGQGKRAI---PVPNKLGLKKTLLKAPGSTSNLARKSSSGP 334
Query: 264 PRIGASAA 271
GAS+A
Sbjct: 335 VWSGASSA 342
>gi|38045890 CUB and Sushi multiple domains 3 isoform 2 [Homo sapiens]
Length = 3667
Score = 28.9 bits (63), Expect = 5.2
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 19 QRDGDQQNQQPYCQGDANGNVCLLPGVP-HG 48
Q +G QP+C GDA G C PG P HG
Sbjct: 2996 QLNGHWSGSQPHCSGDATG-TCGDPGTPGHG 3025
>gi|205277354 CUB and Sushi multiple domains 3 isoform 3 [Homo
sapiens]
Length = 3538
Score = 28.9 bits (63), Expect = 5.2
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 19 QRDGDQQNQQPYCQGDANGNVCLLPGVP-HG 48
Q +G QP+C GDA G C PG P HG
Sbjct: 2867 QLNGHWSGSQPHCSGDATG-TCGDPGTPGHG 2896
>gi|38045888 CUB and Sushi multiple domains 3 isoform 1 [Homo sapiens]
Length = 3707
Score = 28.9 bits (63), Expect = 5.2
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 19 QRDGDQQNQQPYCQGDANGNVCLLPGVP-HG 48
Q +G QP+C GDA G C PG P HG
Sbjct: 3036 QLNGHWSGSQPHCSGDATG-TCGDPGTPGHG 3065
>gi|148231468 GDNF family receptor alpha like [Homo sapiens]
Length = 394
Score = 28.1 bits (61), Expect = 8.8
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 24/89 (26%)
Query: 157 SSEDRCR---KLIHRKDCFNCNSFSSDVGCA---------INLTNKASSFRGSIGFSPW- 203
S E C+ ++HRK CFN + S+ G A I LT S F G + ++
Sbjct: 299 SEESLCKIFQHMLHRKSCFNYPTLSNVKGMALYTRKHANKITLTGFHSPFNGEVIYAAMC 358
Query: 204 -----------MVPLQEREAASRMAAPSS 221
MV L+ +S+ PSS
Sbjct: 359 MTVTCGILLLVMVKLRTSRISSKARDPSS 387
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,937,523
Number of Sequences: 37866
Number of extensions: 569319
Number of successful extensions: 1337
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1332
Number of HSP's gapped (non-prelim): 16
length of query: 277
length of database: 18,247,518
effective HSP length: 101
effective length of query: 176
effective length of database: 14,423,052
effective search space: 2538457152
effective search space used: 2538457152
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.