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Search of human proteins with 239748395
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748395 PREDICTED: hypothetical protein XP_002346654 [Homo
sapiens]
(203 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753832 PREDICTED: hypothetical protein XP_002345793 [Homo ... 402 e-113
gi|239748395 PREDICTED: hypothetical protein XP_002346654 [Homo ... 402 e-113
gi|239742323 PREDICTED: hypothetical protein XP_002342491 [Homo ... 402 e-113
gi|156104891 general transcription factor IIF, polypeptide 1, 74... 28 4.1
gi|24308075 RAB11 family interacting protein 5 (class I) [Homo s... 28 5.3
gi|239758167 PREDICTED: hypothetical protein XP_002346321 [Homo ... 28 5.3
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 28 7.0
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 28 7.0
gi|239757747 PREDICTED: similar to Serine/threonine-protein kina... 27 9.1
gi|94557295 mitogen-activated protein kinase 8 interacting prote... 27 9.1
gi|94557297 mitogen-activated protein kinase 8 interacting prote... 27 9.1
gi|126131099 guanine nucleotide exchange factor p532 [Homo sapiens] 27 9.1
>gi|239753832 PREDICTED: hypothetical protein XP_002345793 [Homo
sapiens]
Length = 203
Score = 402 bits (1034), Expect = e-113
Identities = 203/203 (100%), Positives = 203/203 (100%)
Query: 1 MSLPTSYPPFITDKILGNNGEKNHATSVSDVPIFDGATIGTGLKLAAAQQGARGAGKRRG 60
MSLPTSYPPFITDKILGNNGEKNHATSVSDVPIFDGATIGTGLKLAAAQQGARGAGKRRG
Sbjct: 1 MSLPTSYPPFITDKILGNNGEKNHATSVSDVPIFDGATIGTGLKLAAAQQGARGAGKRRG 60
Query: 61 CELTEENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGLGQAIKGLLQVGELEVEAGRV 120
CELTEENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGLGQAIKGLLQVGELEVEAGRV
Sbjct: 61 CELTEENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGLGQAIKGLLQVGELEVEAGRV 120
Query: 121 LLRLPVGVAALVERVPEDLLGQRDAPAHHDARHTPEFGVGLFCLVTLGDSSLTKSVSWKY 180
LLRLPVGVAALVERVPEDLLGQRDAPAHHDARHTPEFGVGLFCLVTLGDSSLTKSVSWKY
Sbjct: 121 LLRLPVGVAALVERVPEDLLGQRDAPAHHDARHTPEFGVGLFCLVTLGDSSLTKSVSWKY 180
Query: 181 SASRSSRSFSGKCSGSASCLSRR 203
SASRSSRSFSGKCSGSASCLSRR
Sbjct: 181 SASRSSRSFSGKCSGSASCLSRR 203
>gi|239748395 PREDICTED: hypothetical protein XP_002346654 [Homo
sapiens]
Length = 203
Score = 402 bits (1034), Expect = e-113
Identities = 203/203 (100%), Positives = 203/203 (100%)
Query: 1 MSLPTSYPPFITDKILGNNGEKNHATSVSDVPIFDGATIGTGLKLAAAQQGARGAGKRRG 60
MSLPTSYPPFITDKILGNNGEKNHATSVSDVPIFDGATIGTGLKLAAAQQGARGAGKRRG
Sbjct: 1 MSLPTSYPPFITDKILGNNGEKNHATSVSDVPIFDGATIGTGLKLAAAQQGARGAGKRRG 60
Query: 61 CELTEENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGLGQAIKGLLQVGELEVEAGRV 120
CELTEENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGLGQAIKGLLQVGELEVEAGRV
Sbjct: 61 CELTEENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGLGQAIKGLLQVGELEVEAGRV 120
Query: 121 LLRLPVGVAALVERVPEDLLGQRDAPAHHDARHTPEFGVGLFCLVTLGDSSLTKSVSWKY 180
LLRLPVGVAALVERVPEDLLGQRDAPAHHDARHTPEFGVGLFCLVTLGDSSLTKSVSWKY
Sbjct: 121 LLRLPVGVAALVERVPEDLLGQRDAPAHHDARHTPEFGVGLFCLVTLGDSSLTKSVSWKY 180
Query: 181 SASRSSRSFSGKCSGSASCLSRR 203
SASRSSRSFSGKCSGSASCLSRR
Sbjct: 181 SASRSSRSFSGKCSGSASCLSRR 203
>gi|239742323 PREDICTED: hypothetical protein XP_002342491 [Homo
sapiens]
Length = 203
Score = 402 bits (1034), Expect = e-113
Identities = 203/203 (100%), Positives = 203/203 (100%)
Query: 1 MSLPTSYPPFITDKILGNNGEKNHATSVSDVPIFDGATIGTGLKLAAAQQGARGAGKRRG 60
MSLPTSYPPFITDKILGNNGEKNHATSVSDVPIFDGATIGTGLKLAAAQQGARGAGKRRG
Sbjct: 1 MSLPTSYPPFITDKILGNNGEKNHATSVSDVPIFDGATIGTGLKLAAAQQGARGAGKRRG 60
Query: 61 CELTEENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGLGQAIKGLLQVGELEVEAGRV 120
CELTEENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGLGQAIKGLLQVGELEVEAGRV
Sbjct: 61 CELTEENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGLGQAIKGLLQVGELEVEAGRV 120
Query: 121 LLRLPVGVAALVERVPEDLLGQRDAPAHHDARHTPEFGVGLFCLVTLGDSSLTKSVSWKY 180
LLRLPVGVAALVERVPEDLLGQRDAPAHHDARHTPEFGVGLFCLVTLGDSSLTKSVSWKY
Sbjct: 121 LLRLPVGVAALVERVPEDLLGQRDAPAHHDARHTPEFGVGLFCLVTLGDSSLTKSVSWKY 180
Query: 181 SASRSSRSFSGKCSGSASCLSRR 203
SASRSSRSFSGKCSGSASCLSRR
Sbjct: 181 SASRSSRSFSGKCSGSASCLSRR 203
>gi|156104891 general transcription factor IIF, polypeptide 1, 74kDa
[Homo sapiens]
Length = 517
Score = 28.5 bits (62), Expect = 4.1
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 85 GGGARGVTRHHVEAGLGQAIKGLLQVGELEVEAGRVLLRLPVGVAALVERVPEDLLGQRD 144
GG +RG +R + G + L+ ++E G+ + +P ++ P+ L G +
Sbjct: 378 GGSSRGNSRPGTPSAEGGSTSSTLRAAASKLEQGKRVSEMPAAKRLRLDTGPQSLSG-KS 436
Query: 145 APAHHDARHTPEFG 158
P + TP G
Sbjct: 437 TPQPPSGKTTPNSG 450
>gi|24308075 RAB11 family interacting protein 5 (class I) [Homo
sapiens]
Length = 653
Score = 28.1 bits (61), Expect = 5.3
Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 9/102 (8%)
Query: 51 GARGAGKRRGCELTEENVLGVAAPDLVVAVLVDEGGGARGVTR-------HHVEAGLGQA 103
GA G+ G L E + VA P + + V E GAR R HH GL ++
Sbjct: 416 GASHPGEEEGARLPEGKPVQVATPIVASSEAVAEKEGARKEERKPRMGLFHHHHQGLSRS 475
Query: 104 IKGLLQVGELEVEAGRVLLRLPVGVAALVERVPEDLLGQRDA 145
G + L + G +L P ++ E+ G R+A
Sbjct: 476 ELG--RRSSLGEKGGPILGASPHHSSSGEEKAKSSWFGLREA 515
>gi|239758167 PREDICTED: hypothetical protein XP_002346321 [Homo
sapiens]
Length = 271
Score = 28.1 bits (61), Expect = 5.3
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 34 FDGATIGTGLKLAAAQQGARGAGKRRGCELTEENVLGVAAPDLVVAVLVDEGGGARG 90
F GA G +L + ++ AR + R EE+ LG AA V + + G G+RG
Sbjct: 7 FGGAQEAGGRRLTSRRENARAQPRGRA----EEDKLGSAAAWKVAELALPGGSGSRG 59
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 27.7 bits (60), Expect = 7.0
Identities = 34/108 (31%), Positives = 42/108 (38%), Gaps = 16/108 (14%)
Query: 42 GLKLAAAQQGARGAGKRRGCELTEENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGLG 101
GL+ A + R AG RG L + +L AP GGA H + A
Sbjct: 457 GLRGAGPEGAGRLAGPWRGLRL--QTLLLQDAPH----------GGAH---EHVLVAVPA 501
Query: 102 QAIKGLLQVGELEVEA-GRVLLRLPVGVAALVERVPEDLLGQRDAPAH 148
+ GL+ G+ V A G RLP GV E V G R A H
Sbjct: 502 TGVGGLVGAGQGAVAAAGNAPERLPAGVQGCGEEVGRGARGDRVAGGH 549
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 27.7 bits (60), Expect = 7.0
Identities = 34/108 (31%), Positives = 42/108 (38%), Gaps = 16/108 (14%)
Query: 42 GLKLAAAQQGARGAGKRRGCELTEENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGLG 101
GL+ A + R AG RG L + +L AP GGA H + A
Sbjct: 457 GLRGAGPEGAGRLAGPWRGLRL--QTLLLQDAPH----------GGAH---EHVLVAVPA 501
Query: 102 QAIKGLLQVGELEVEA-GRVLLRLPVGVAALVERVPEDLLGQRDAPAH 148
+ GL+ G+ V A G RLP GV E V G R A H
Sbjct: 502 TGVGGLVGAGQGAVAAAGNAPERLPAGVQGCGEEVGRGARGDRVAGGH 549
>gi|239757747 PREDICTED: similar to Serine/threonine-protein kinase
PRKX (Protein kinase PKX1) [Homo sapiens]
Length = 110
Score = 27.3 bits (59), Expect = 9.1
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 59 RGCELTEENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGL 100
RGC TEE L + P L V EGG + R +GL
Sbjct: 13 RGC--TEERTLSLTFPGLSVPAAPREGGARSCLVRESARSGL 52
>gi|94557295 mitogen-activated protein kinase 8 interacting protein
3 isoform 2 [Homo sapiens]
Length = 1330
Score = 27.3 bits (59), Expect = 9.1
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 54 GAGKRRGCELTE-------ENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGLGQAIKG 106
G GK G L E +N L V DL+ V D+ G + V R +EA +K
Sbjct: 409 GMGKEVGNLLLENSQLLETKNALNVVKNDLIAKV--DQLSGEQEVLRGELEAAKQAKVKL 466
Query: 107 LLQVGELEVEAGRV 120
++ ELE E RV
Sbjct: 467 ENRIKELEEELKRV 480
>gi|94557297 mitogen-activated protein kinase 8 interacting protein
3 isoform 1 [Homo sapiens]
Length = 1336
Score = 27.3 bits (59), Expect = 9.1
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 54 GAGKRRGCELTE-------ENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGLGQAIKG 106
G GK G L E +N L V DL+ V D+ G + V R +EA +K
Sbjct: 415 GMGKEVGNLLLENSQLLETKNALNVVKNDLIAKV--DQLSGEQEVLRGELEAAKQAKVKL 472
Query: 107 LLQVGELEVEAGRV 120
++ ELE E RV
Sbjct: 473 ENRIKELEEELKRV 486
>gi|126131099 guanine nucleotide exchange factor p532 [Homo sapiens]
Length = 4861
Score = 27.3 bits (59), Expect = 9.1
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 159 VGLFCLVTLGDSSLTKSVSWKYSASRSSRSFSGKCSGSASCLS 201
V L CL G + L+ S S S S SR K + SCL+
Sbjct: 3222 VRLMCLAAAGRAGLSTSPSAMASTSERSRGGHSKANKPISCLA 3264
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,744,835
Number of Sequences: 37866
Number of extensions: 339536
Number of successful extensions: 820
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 816
Number of HSP's gapped (non-prelim): 12
length of query: 203
length of database: 18,247,518
effective HSP length: 97
effective length of query: 106
effective length of database: 14,574,516
effective search space: 1544898696
effective search space used: 1544898696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.