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Search of human proteins with 239748004
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748004 PREDICTED: hypothetical protein [Homo sapiens]
(144 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753439 PREDICTED: hypothetical protein [Homo sapiens] 300 3e-82
gi|239748004 PREDICTED: hypothetical protein [Homo sapiens] 300 3e-82
gi|239741902 PREDICTED: hypothetical protein XP_002342344 [Homo ... 300 3e-82
gi|39979638 family with sequence similarity 5, member C [Homo sa... 32 0.18
gi|239756243 PREDICTED: similar to hCG2038990 [Homo sapiens] 28 2.0
gi|4557743 Mediterranean fever protein [Homo sapiens] 28 2.7
gi|189181654 deleted in azoospermia [Homo sapiens] 28 2.7
gi|54292113 deleted in azoospermia 4 isoform 1 [Homo sapiens] 28 2.7
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi... 27 4.5
gi|58331253 obscurin, cytoskeletal calmodulin and titin-interact... 27 5.9
gi|148833506 obscurin, cytoskeletal calmodulin and titin-interac... 27 5.9
gi|112382250 spectrin, beta, non-erythrocytic 1 isoform 1 [Homo ... 27 5.9
gi|229577000 ecotropic viral integration site 5-like isoform 1 [... 27 7.7
gi|21687020 ecotropic viral integration site 5-like isoform 2 [H... 27 7.7
gi|32698734 deleted in azoospermia 4 isoform 2 [Homo sapiens] 27 7.7
gi|7662342 zinc fingers and homeoboxes 2 [Homo sapiens] 27 7.7
gi|11036660 deleted in azoospermia 2 isoform 1 [Homo sapiens] 27 7.7
gi|54292110 deleted in azoospermia 3 [Homo sapiens] 27 7.7
gi|54292107 deleted in azoospermia 2 isoform 3 [Homo sapiens] 27 7.7
gi|54292105 deleted in azoospermia 2 isoform 2 [Homo sapiens] 27 7.7
>gi|239753439 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 300 bits (768), Expect = 3e-82
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MSVKATETEQLKKGWAPSSSRHLQLWRHQKPLSSPSAKTQSTPSASLLSGVSVWEWEAAA 60
MSVKATETEQLKKGWAPSSSRHLQLWRHQKPLSSPSAKTQSTPSASLLSGVSVWEWEAAA
Sbjct: 1 MSVKATETEQLKKGWAPSSSRHLQLWRHQKPLSSPSAKTQSTPSASLLSGVSVWEWEAAA 60
Query: 61 SQSWVLRAQCFTETHRRLWQTLSDTCAEATWLLSGRGLDCWEEYEGQSRPLAQHQLVGKG 120
SQSWVLRAQCFTETHRRLWQTLSDTCAEATWLLSGRGLDCWEEYEGQSRPLAQHQLVGKG
Sbjct: 61 SQSWVLRAQCFTETHRRLWQTLSDTCAEATWLLSGRGLDCWEEYEGQSRPLAQHQLVGKG 120
Query: 121 SQAGERLTPAVSFLPSHFSAASHQ 144
SQAGERLTPAVSFLPSHFSAASHQ
Sbjct: 121 SQAGERLTPAVSFLPSHFSAASHQ 144
>gi|239748004 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 300 bits (768), Expect = 3e-82
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MSVKATETEQLKKGWAPSSSRHLQLWRHQKPLSSPSAKTQSTPSASLLSGVSVWEWEAAA 60
MSVKATETEQLKKGWAPSSSRHLQLWRHQKPLSSPSAKTQSTPSASLLSGVSVWEWEAAA
Sbjct: 1 MSVKATETEQLKKGWAPSSSRHLQLWRHQKPLSSPSAKTQSTPSASLLSGVSVWEWEAAA 60
Query: 61 SQSWVLRAQCFTETHRRLWQTLSDTCAEATWLLSGRGLDCWEEYEGQSRPLAQHQLVGKG 120
SQSWVLRAQCFTETHRRLWQTLSDTCAEATWLLSGRGLDCWEEYEGQSRPLAQHQLVGKG
Sbjct: 61 SQSWVLRAQCFTETHRRLWQTLSDTCAEATWLLSGRGLDCWEEYEGQSRPLAQHQLVGKG 120
Query: 121 SQAGERLTPAVSFLPSHFSAASHQ 144
SQAGERLTPAVSFLPSHFSAASHQ
Sbjct: 121 SQAGERLTPAVSFLPSHFSAASHQ 144
>gi|239741902 PREDICTED: hypothetical protein XP_002342344 [Homo
sapiens]
Length = 144
Score = 300 bits (768), Expect = 3e-82
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MSVKATETEQLKKGWAPSSSRHLQLWRHQKPLSSPSAKTQSTPSASLLSGVSVWEWEAAA 60
MSVKATETEQLKKGWAPSSSRHLQLWRHQKPLSSPSAKTQSTPSASLLSGVSVWEWEAAA
Sbjct: 1 MSVKATETEQLKKGWAPSSSRHLQLWRHQKPLSSPSAKTQSTPSASLLSGVSVWEWEAAA 60
Query: 61 SQSWVLRAQCFTETHRRLWQTLSDTCAEATWLLSGRGLDCWEEYEGQSRPLAQHQLVGKG 120
SQSWVLRAQCFTETHRRLWQTLSDTCAEATWLLSGRGLDCWEEYEGQSRPLAQHQLVGKG
Sbjct: 61 SQSWVLRAQCFTETHRRLWQTLSDTCAEATWLLSGRGLDCWEEYEGQSRPLAQHQLVGKG 120
Query: 121 SQAGERLTPAVSFLPSHFSAASHQ 144
SQAGERLTPAVSFLPSHFSAASHQ
Sbjct: 121 SQAGERLTPAVSFLPSHFSAASHQ 144
>gi|39979638 family with sequence similarity 5, member C [Homo
sapiens]
Length = 766
Score = 32.0 bits (71), Expect = 0.18
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 40 QSTPSASLLSGVSVWEWEAAASQSWVLRAQCFTETHRRLWQTLSDTCAEATWLLSGRG 97
+S A L S +++WEW A + WVL ++ H + WLLS +G
Sbjct: 4 RSRAGAELFSLMALWEWIALSLHCWVLAVAAVSDQH---------ATSPFDWLLSDKG 52
>gi|239756243 PREDICTED: similar to hCG2038990 [Homo sapiens]
Length = 185
Score = 28.5 bits (62), Expect = 2.0
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 78 LWQTLSDTCAEATWLLSGRGLDCWEEYEGQSRPLAQH 114
+W + WL + GL CW G SR LA+H
Sbjct: 128 VWPGIHGALCAGRWLRTSSGLHCWAHLPG-SRLLARH 163
>gi|4557743 Mediterranean fever protein [Homo sapiens]
Length = 781
Score = 28.1 bits (61), Expect = 2.7
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 44 SASLLSGVSVWEWEAAASQSWVLRAQCFTETHRRLWQTLS 83
S S LSG WE E +W+L A C T R+ TLS
Sbjct: 645 SPSFLSGRRYWEVEVGDKTAWILGA-CKTSISRKGNMTLS 683
>gi|189181654 deleted in azoospermia [Homo sapiens]
Length = 744
Score = 28.1 bits (61), Expect = 2.7
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 10 QLKKGWA-PSSSRHLQLWRHQKPLSS--PSAKTQSTPSASLLSGVSVWEWEAAASQSWVL 66
Q + W P++ +LQ P++ SA TP++++ S AAASQ WVL
Sbjct: 138 QFQNVWRNPNTETYLQPQITPNPVTQHVQSAANPETPNSTISREASTQSSSAAASQGWVL 197
Score = 28.1 bits (61), Expect = 2.7
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 10 QLKKGWA-PSSSRHLQLWRHQKPLSS--PSAKTQSTPSASLLSGVSVWEWEAAASQSWVL 66
Q + W P++ +LQ P++ SA TP++++ S AAASQ WVL
Sbjct: 303 QFQNVWRNPNTETYLQPQITPNPVTQHVQSAANPETPNSTISREASTQSSSAAASQGWVL 362
Score = 26.6 bits (57), Expect = 7.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 36 SAKTQSTPSASLLSGVSVWEWEAAASQSWVL 66
SA TP++++ S AAASQ WVL
Sbjct: 2 SAANPETPNSTISREASTQSSSAAASQGWVL 32
>gi|54292113 deleted in azoospermia 4 isoform 1 [Homo sapiens]
Length = 579
Score = 28.1 bits (61), Expect = 2.7
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 10 QLKKGWA-PSSSRHLQLWRHQKPLSS--PSAKTQSTPSASLLSGVSVWEWEAAASQSWVL 66
Q + W P++ +LQ P++ SA TP++++ S AAASQ WVL
Sbjct: 138 QFQNVWRNPNTETYLQPQITPNPVTQHVQSAANPETPNSTISREASTQSSSAAASQGWVL 197
Score = 26.6 bits (57), Expect = 7.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 36 SAKTQSTPSASLLSGVSVWEWEAAASQSWVL 66
SA TP++++ S AAASQ WVL
Sbjct: 2 SAANPETPNSTISREASTQSSSAAASQGWVL 32
>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
sapiens]
Length = 674
Score = 27.3 bits (59), Expect = 4.5
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 16 APSSSRHLQLWRHQKPLSSPSAKTQSTPSASLLSGVSVWEWEAAASQ 62
+PS SR R Q P SP+ + + P+AS G + + E AA +
Sbjct: 517 SPSQSRSRSRSRSQSPSPSPAREKLTRPAASPAVGEKLKKTEPAAGK 563
>gi|58331253 obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF isoform a [Homo sapiens]
Length = 6620
Score = 26.9 bits (58), Expect = 5.9
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 77 RLWQTLSDTCAEATWLLSGRGLDCWEEYEGQS 108
+L LSD A TWL GR L +YE Q+
Sbjct: 725 QLLAELSDQAAAVTWLKDGRTLSPGPKYEVQA 756
>gi|148833506 obscurin, cytoskeletal calmodulin and
titin-interacting RhoGEF isoform b [Homo sapiens]
Length = 7968
Score = 26.9 bits (58), Expect = 5.9
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 77 RLWQTLSDTCAEATWLLSGRGLDCWEEYEGQS 108
+L LSD A TWL GR L +YE Q+
Sbjct: 725 QLLAELSDQAAAVTWLKDGRTLSPGPKYEVQA 756
>gi|112382250 spectrin, beta, non-erythrocytic 1 isoform 1 [Homo
sapiens]
Length = 2364
Score = 26.9 bits (58), Expect = 5.9
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 16 APSSSRHLQLWRHQKPLSSPSAKTQSTPSASLLSGVS-VWEWEA----AASQSW 64
+P+S R + + ++ A+TQ TPSA + ++ EWEA A+S+SW
Sbjct: 2169 SPTSDRKAKTALPAQSAATLPARTQETPSAQMEGFLNRKHEWEAHNKKASSRSW 2222
>gi|229577000 ecotropic viral integration site 5-like isoform 1
[Homo sapiens]
Length = 805
Score = 26.6 bits (57), Expect = 7.7
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 14/53 (26%)
Query: 88 EATWLLSGRGLDCWEEYEGQSRPLAQHQLVGKGSQAGERLTPAVSFLPSHFSA 140
E TW+L GR + WEE+ + L + +L+ KG +P HF A
Sbjct: 84 EDTWILWGRIANEWEEWRRRKEKLLK-ELIRKG-------------IPHHFRA 122
>gi|21687020 ecotropic viral integration site 5-like isoform 2 [Homo
sapiens]
Length = 794
Score = 26.6 bits (57), Expect = 7.7
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 14/53 (26%)
Query: 88 EATWLLSGRGLDCWEEYEGQSRPLAQHQLVGKGSQAGERLTPAVSFLPSHFSA 140
E TW+L GR + WEE+ + L + +L+ KG +P HF A
Sbjct: 84 EDTWILWGRIANEWEEWRRRKEKLLK-ELIRKG-------------IPHHFRA 122
>gi|32698734 deleted in azoospermia 4 isoform 2 [Homo sapiens]
Length = 390
Score = 26.6 bits (57), Expect = 7.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 36 SAKTQSTPSASLLSGVSVWEWEAAASQSWVL 66
SA TP++++ S AAASQ WVL
Sbjct: 2 SAANPETPNSTISREASTQSSSAAASQGWVL 32
>gi|7662342 zinc fingers and homeoboxes 2 [Homo sapiens]
Length = 837
Score = 26.6 bits (57), Expect = 7.7
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 31 PLSSPSAKTQSTPSASLLSGVSVWEWEAAASQSWVLRAQCFTETHRRLW 79
PL++ + +A++++ + + + A SW+ A E H R+W
Sbjct: 261 PLNTTKYNSALDTNATMINSFNKFPYPTQAELSWLTAASKHPEEHIRIW 309
>gi|11036660 deleted in azoospermia 2 isoform 1 [Homo sapiens]
Length = 558
Score = 26.6 bits (57), Expect = 7.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 36 SAKTQSTPSASLLSGVSVWEWEAAASQSWVL 66
SA TP++++ S AAASQ WVL
Sbjct: 2 SAANPETPNSTISREASTQSSSAAASQGWVL 32
>gi|54292110 deleted in azoospermia 3 [Homo sapiens]
Length = 438
Score = 26.6 bits (57), Expect = 7.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 36 SAKTQSTPSASLLSGVSVWEWEAAASQSWVL 66
SA TP++++ S AAASQ WVL
Sbjct: 2 SAANPETPNSTISREASTQSSSAAASQGWVL 32
>gi|54292107 deleted in azoospermia 2 isoform 3 [Homo sapiens]
Length = 366
Score = 26.6 bits (57), Expect = 7.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 36 SAKTQSTPSASLLSGVSVWEWEAAASQSWVL 66
SA TP++++ S AAASQ WVL
Sbjct: 2 SAANPETPNSTISREASTQSSSAAASQGWVL 32
>gi|54292105 deleted in azoospermia 2 isoform 2 [Homo sapiens]
Length = 534
Score = 26.6 bits (57), Expect = 7.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 36 SAKTQSTPSASLLSGVSVWEWEAAASQSWVL 66
SA TP++++ S AAASQ WVL
Sbjct: 2 SAANPETPNSTISREASTQSSSAAASQGWVL 32
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.122 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,125,122
Number of Sequences: 37866
Number of extensions: 261179
Number of successful extensions: 668
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 650
Number of HSP's gapped (non-prelim): 23
length of query: 144
length of database: 18,247,518
effective HSP length: 92
effective length of query: 52
effective length of database: 14,763,846
effective search space: 767719992
effective search space used: 767719992
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.