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Search of human proteins with 239747834
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747834 PREDICTED: hypothetical protein XP_002348325 [Homo
sapiens]
(188 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753253 PREDICTED: hypothetical protein XP_002345598 [Homo ... 394 e-110
gi|239747834 PREDICTED: hypothetical protein XP_002348325 [Homo ... 394 e-110
gi|239741700 PREDICTED: hypothetical protein XP_002342276 [Homo ... 394 e-110
gi|55769585 HEF-like protein [Homo sapiens] 29 2.7
gi|239754902 PREDICTED: hypothetical protein [Homo sapiens] 28 3.6
gi|239749442 PREDICTED: hypothetical protein XP_002347044 [Homo ... 28 3.6
gi|149274655 synapse defective 1, Rho GTPase, homolog 2 [Homo sa... 28 4.7
gi|94536832 PAP associated domain containing 5 isoform b [Homo s... 28 4.7
gi|94536834 PAP associated domain containing 5 isoform a [Homo s... 28 4.7
gi|81295809 pericentrin [Homo sapiens] 28 6.1
>gi|239753253 PREDICTED: hypothetical protein XP_002345598 [Homo
sapiens]
Length = 188
Score = 394 bits (1011), Expect = e-110
Identities = 188/188 (100%), Positives = 188/188 (100%)
Query: 1 MMTALFCQKFIIFKITFHQRETTFHQRPSESKESCSLYTPCLFSAVSVWHASMGPGQRDP 60
MMTALFCQKFIIFKITFHQRETTFHQRPSESKESCSLYTPCLFSAVSVWHASMGPGQRDP
Sbjct: 1 MMTALFCQKFIIFKITFHQRETTFHQRPSESKESCSLYTPCLFSAVSVWHASMGPGQRDP 60
Query: 61 QISEAEEERQFEASLLQFKRQFLKCLQQISLWSKCTPIRDIRYGSQRLYEADLTMSVRVC 120
QISEAEEERQFEASLLQFKRQFLKCLQQISLWSKCTPIRDIRYGSQRLYEADLTMSVRVC
Sbjct: 61 QISEAEEERQFEASLLQFKRQFLKCLQQISLWSKCTPIRDIRYGSQRLYEADLTMSVRVC 120
Query: 121 LEDSSCPDGLSWVSNTKASHRGIRRSENKGSEAIQTLTTAGSCYHNKGWRGKEKGYIYQG 180
LEDSSCPDGLSWVSNTKASHRGIRRSENKGSEAIQTLTTAGSCYHNKGWRGKEKGYIYQG
Sbjct: 121 LEDSSCPDGLSWVSNTKASHRGIRRSENKGSEAIQTLTTAGSCYHNKGWRGKEKGYIYQG 180
Query: 181 PGDGAFEG 188
PGDGAFEG
Sbjct: 181 PGDGAFEG 188
>gi|239747834 PREDICTED: hypothetical protein XP_002348325 [Homo
sapiens]
Length = 188
Score = 394 bits (1011), Expect = e-110
Identities = 188/188 (100%), Positives = 188/188 (100%)
Query: 1 MMTALFCQKFIIFKITFHQRETTFHQRPSESKESCSLYTPCLFSAVSVWHASMGPGQRDP 60
MMTALFCQKFIIFKITFHQRETTFHQRPSESKESCSLYTPCLFSAVSVWHASMGPGQRDP
Sbjct: 1 MMTALFCQKFIIFKITFHQRETTFHQRPSESKESCSLYTPCLFSAVSVWHASMGPGQRDP 60
Query: 61 QISEAEEERQFEASLLQFKRQFLKCLQQISLWSKCTPIRDIRYGSQRLYEADLTMSVRVC 120
QISEAEEERQFEASLLQFKRQFLKCLQQISLWSKCTPIRDIRYGSQRLYEADLTMSVRVC
Sbjct: 61 QISEAEEERQFEASLLQFKRQFLKCLQQISLWSKCTPIRDIRYGSQRLYEADLTMSVRVC 120
Query: 121 LEDSSCPDGLSWVSNTKASHRGIRRSENKGSEAIQTLTTAGSCYHNKGWRGKEKGYIYQG 180
LEDSSCPDGLSWVSNTKASHRGIRRSENKGSEAIQTLTTAGSCYHNKGWRGKEKGYIYQG
Sbjct: 121 LEDSSCPDGLSWVSNTKASHRGIRRSENKGSEAIQTLTTAGSCYHNKGWRGKEKGYIYQG 180
Query: 181 PGDGAFEG 188
PGDGAFEG
Sbjct: 181 PGDGAFEG 188
>gi|239741700 PREDICTED: hypothetical protein XP_002342276 [Homo
sapiens]
Length = 188
Score = 394 bits (1011), Expect = e-110
Identities = 188/188 (100%), Positives = 188/188 (100%)
Query: 1 MMTALFCQKFIIFKITFHQRETTFHQRPSESKESCSLYTPCLFSAVSVWHASMGPGQRDP 60
MMTALFCQKFIIFKITFHQRETTFHQRPSESKESCSLYTPCLFSAVSVWHASMGPGQRDP
Sbjct: 1 MMTALFCQKFIIFKITFHQRETTFHQRPSESKESCSLYTPCLFSAVSVWHASMGPGQRDP 60
Query: 61 QISEAEEERQFEASLLQFKRQFLKCLQQISLWSKCTPIRDIRYGSQRLYEADLTMSVRVC 120
QISEAEEERQFEASLLQFKRQFLKCLQQISLWSKCTPIRDIRYGSQRLYEADLTMSVRVC
Sbjct: 61 QISEAEEERQFEASLLQFKRQFLKCLQQISLWSKCTPIRDIRYGSQRLYEADLTMSVRVC 120
Query: 121 LEDSSCPDGLSWVSNTKASHRGIRRSENKGSEAIQTLTTAGSCYHNKGWRGKEKGYIYQG 180
LEDSSCPDGLSWVSNTKASHRGIRRSENKGSEAIQTLTTAGSCYHNKGWRGKEKGYIYQG
Sbjct: 121 LEDSSCPDGLSWVSNTKASHRGIRRSENKGSEAIQTLTTAGSCYHNKGWRGKEKGYIYQG 180
Query: 181 PGDGAFEG 188
PGDGAFEG
Sbjct: 181 PGDGAFEG 188
>gi|55769585 HEF-like protein [Homo sapiens]
Length = 786
Score = 28.9 bits (63), Expect = 2.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 26 QRPSESKESCSLYTPCLFSAVSVWHASMGPGQRDPQISEAE 66
+R E C LY LF A+S +H S+ Q I++++
Sbjct: 667 ERKPRLSEHCRLYFGALFKAISAFHGSLSSSQPAEIITQSK 707
>gi|239754902 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 28.5 bits (62), Expect = 3.6
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 40 PCLFSAVSV---WHASMGPGQRDPQISEAEEERQFEASLLQFKRQFL 83
PC+FS+ ++ H+S+G + PQ + R F + L+ + Q L
Sbjct: 192 PCIFSSTTLNLEHHSSLGLQLQGPQTKTSASPRVFRCTTLKLEHQLL 238
>gi|239749442 PREDICTED: hypothetical protein XP_002347044 [Homo
sapiens]
Length = 269
Score = 28.5 bits (62), Expect = 3.6
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 40 PCLFSAVSV---WHASMGPGQRDPQISEAEEERQFEASLLQFKRQFL 83
PC+FS+ ++ H+S+G + PQ + R F + L+ + Q L
Sbjct: 187 PCIFSSTTLNLEHHSSLGLQLQGPQTKTSASPRVFRCTTLKLEHQLL 233
>gi|149274655 synapse defective 1, Rho GTPase, homolog 2 [Homo
sapiens]
Length = 1194
Score = 28.1 bits (61), Expect = 4.7
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 100 DIRYGSQRLYEADLTMSVRVCLEDSSCPDGLSWVSNTKASHRGIRRSENKGSEAIQTLTT 159
D SQ+ Y+ +MS + + DG S TKAS G KG E I
Sbjct: 595 DTSVSSQQSYQKKNSMSSKYSCKGGYLSDGDSPELTTKASKHGSENKFGKGKEII----- 649
Query: 160 AGSCYHNK 167
+ SC N+
Sbjct: 650 SNSCSKNE 657
>gi|94536832 PAP associated domain containing 5 isoform b [Homo
sapiens]
Length = 442
Score = 28.1 bits (61), Expect = 4.7
Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Query: 95 CTPIRDIRYGSQRLYEADLTMSVRVCLEDSSCPDGLSWVSNTKASHRGIR--RSENKGSE 152
C P R GSQ + L S V S+ S +N K+ H R RS +KG +
Sbjct: 344 CRPSTGNRVGSQ---DVSLESSQAVGKMQSTQTTNTSNSTN-KSQHGSARLFRSSSKGFQ 399
Query: 153 AIQTLTTAGSCYHNKGWRGKEKGYIYQG 180
T T+ GS NK +GK Y G
Sbjct: 400 GT-TQTSHGSLMTNKQHQGKSNNQYYHG 426
>gi|94536834 PAP associated domain containing 5 isoform a [Homo
sapiens]
Length = 489
Score = 28.1 bits (61), Expect = 4.7
Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Query: 95 CTPIRDIRYGSQRLYEADLTMSVRVCLEDSSCPDGLSWVSNTKASHRGIR--RSENKGSE 152
C P R GSQ + L S V S+ S +N K+ H R RS +KG +
Sbjct: 391 CRPSTGNRVGSQ---DVSLESSQAVGKMQSTQTTNTSNSTN-KSQHGSARLFRSSSKGFQ 446
Query: 153 AIQTLTTAGSCYHNKGWRGKEKGYIYQG 180
T T+ GS NK +GK Y G
Sbjct: 447 GT-TQTSHGSLMTNKQHQGKSNNQYYHG 473
>gi|81295809 pericentrin [Homo sapiens]
Length = 3336
Score = 27.7 bits (60), Expect = 6.1
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 61 QISEAEEERQFEASLLQFKRQFLKCLQQIS---LWSKCTPIRDIRYGSQRLYEADLTMSV 117
+ E+E+E+Q E LQ + LK Q LWS+ R R L+E L +
Sbjct: 437 KFKESEKEKQLELENLQASYEDLKAQSQEEIRRLWSQLDSARTSRQELSELHEQLLARTS 496
Query: 118 RV 119
RV
Sbjct: 497 RV 498
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.132 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,817,210
Number of Sequences: 37866
Number of extensions: 327190
Number of successful extensions: 804
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 798
Number of HSP's gapped (non-prelim): 11
length of query: 188
length of database: 18,247,518
effective HSP length: 96
effective length of query: 92
effective length of database: 14,612,382
effective search space: 1344339144
effective search space used: 1344339144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.