Guide to the Human Genome
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Name: LOC100291963 Sequence: fasta or formatted (188aa) NCBI GI: 239753253
Description:

PREDICTED: hypothetical protein XP_002345598

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         10           1
 C cysteine            4.3          8           1
 D aspartate           3.2          6           1
 E glutamate           7.4         14           3
 F phenylalanine       5.3         10           1
 G glycine             7.4         14           1
 H histidine           2.7          5           1
 I isoleucine          5.3         10           2
 K lysine              5.9         11           1
 L leucine             6.9         13           2
 M methionine          2.1          4           2
 N asparagine          1.6          3           1
 P proline             3.7          7           1
 Q glutamine           6.9         13           2
 R arginine            6.9         13           2
 S serine             11.2         21           2
 T threonine           5.9         11           2
 V valine              2.7          5           1
 W tryptophan          2.1          4           1
 Y tyrosine            3.2          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345598 
LOC100291107          1.000   PREDICTED: hypothetical protein XP_002348325 
LOC100287010          1.000   PREDICTED: hypothetical protein XP_002342276 
CASS4                 0.011   HEF-like protein 
LOC100292957          0.008   PREDICTED: hypothetical protein 
LOC100290383          0.008   PREDICTED: hypothetical protein XP_002347044 
SYDE2                 0.008   synapse defective 1, Rho GTPase, homolog 2 
PAPD5                 0.008   PAP associated domain containing 5 isoform b 
PAPD5                 0.008   PAP associated domain containing 5 isoform a 
PCNT                  0.008   pericentrin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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