Search of human proteins with 239747432

Search of human proteins with 239747432

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239747432 PREDICTED: hypothetical LOC100131965 [Homo
sapiens]
         (189 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239747432 PREDICTED: hypothetical LOC100131965 [Homo sapiens]      392   e-109
gi|115527094 hypothetical protein LOC171546 [Homo sapiens]            106   1e-23
gi|93141042 ADMP [Homo sapiens]                                        46   2e-05
gi|22325392 tigger transposable element derived 7 [Homo sapiens]       30   1.6  
gi|54606888 hypothetical protein LOC23251 [Homo sapiens]               28   3.6  
gi|27477113 sterol regulatory element-binding transcription fact...    28   3.6  
gi|239749835 PREDICTED: hypothetical protein XP_002347183 [Homo ...    28   4.7  
gi|239744125 PREDICTED: hypothetical protein XP_002343039 [Homo ...    28   4.7  
gi|33383235 minichromosome maintenance complex component 10 isof...    28   4.7  
gi|33383237 minichromosome maintenance complex component 10 isof...    28   4.7  

>gi|239747432 PREDICTED: hypothetical LOC100131965 [Homo sapiens]
          Length = 189

 Score =  392 bits (1006), Expect = e-109
 Identities = 189/189 (100%), Positives = 189/189 (100%)

Query: 1   MSVSSCAAKSHPTGRAGSQRDGNCQCNKASGQPWEQSLNIAIHRCEAIYYSCLAEDEAVS 60
           MSVSSCAAKSHPTGRAGSQRDGNCQCNKASGQPWEQSLNIAIHRCEAIYYSCLAEDEAVS
Sbjct: 1   MSVSSCAAKSHPTGRAGSQRDGNCQCNKASGQPWEQSLNIAIHRCEAIYYSCLAEDEAVS 60

Query: 61  WEMDELRELPGNGAARISRYDMGYSLKQSSRCPGQETRDCSRGSNNKNTVSNGAAWAGGW 120
           WEMDELRELPGNGAARISRYDMGYSLKQSSRCPGQETRDCSRGSNNKNTVSNGAAWAGGW
Sbjct: 61  WEMDELRELPGNGAARISRYDMGYSLKQSSRCPGQETRDCSRGSNNKNTVSNGAAWAGGW 120

Query: 121 RRLAGMELVRAWKXMSWFYYQHLLVTMLYMLEPEERKVLNSTLVSIXYAGYIFMTQHIMA 180
           RRLAGMELVRAWK MSWFYYQHLLVTMLYMLEPEERKVLNSTLVSI YAGYIFMTQHIMA
Sbjct: 121 RRLAGMELVRAWKXMSWFYYQHLLVTMLYMLEPEERKVLNSTLVSIXYAGYIFMTQHIMA 180

Query: 181 ILHYFEIVQ 189
           ILHYFEIVQ
Sbjct: 181 ILHYFEIVQ 189


>gi|115527094 hypothetical protein LOC171546 [Homo sapiens]
          Length = 71

 Score =  106 bits (264), Expect = 1e-23
 Identities = 53/71 (74%), Positives = 56/71 (78%), Gaps = 4/71 (5%)

Query: 123 LAGMELVRAWKXMSWFYYQHLLVTMLYMLEPEERKVLNSTLVSI----XYAGYIFMTQHI 178
           +AGM L RAWK MSWFYYQ+LLVT LYMLEP ER V NS LVSI     Y GY+FM QHI
Sbjct: 1   MAGMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHI 60

Query: 179 MAILHYFEIVQ 189
           MAILHYFEIVQ
Sbjct: 61  MAILHYFEIVQ 71


>gi|93141042 ADMP [Homo sapiens]
          Length = 76

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 4/64 (6%)

Query: 126 MELVRAWKXMSWFYYQHLLVTMLYMLEPEERKVLNSTLVSI----XYAGYIFMTQHIMAI 181
           M+L R  +  SW YYQ+ +++   +LEP ER + N+ L++I     Y  Y+F+  HI   
Sbjct: 1   MDLRRVKEYFSWLYYQYQIISCCAVLEPWERSMFNTILLTIIAMVVYTAYVFIPIHIRLA 60

Query: 182 LHYF 185
             +F
Sbjct: 61  WEFF 64


>gi|22325392 tigger transposable element derived 7 [Homo sapiens]
          Length = 549

 Score = 29.6 bits (65), Expect = 1.6
 Identities = 34/159 (21%), Positives = 57/159 (35%), Gaps = 51/159 (32%)

Query: 3   VSSCAAKSHPTGRAGSQRDGNCQC------NKASGQPWEQSLNIAIHRCEAIY-YSCLAE 55
           + SC A  HP+  + +  DG  +C           QP  Q + ++   C+ +Y +  L E
Sbjct: 295 LDSCPA--HPSSESLTSEDGRIKCMFFPHNTSTLIQPMNQGVILS---CKRLYRWKQLEE 349

Query: 56  DEAVSWEMDELRELPGNGAARISRYDMGYSLKQSSRCPGQETRDCSRGSNNKNTVSNGAA 115
              +  E D+ +E    G ++I  Y                        N K+ + N   
Sbjct: 350 SLVIFEESDDEQEKGDKGVSKIKIY------------------------NIKSAIFN--- 382

Query: 116 WAGGWRRLAGMELVRAWKXMSWFYYQHLLVTMLYMLEPE 154
           WA  W  +  + +  AW+             +LY  EPE
Sbjct: 383 WAKSWEEVKQITIANAWE------------NLLYKKEPE 409


>gi|54606888 hypothetical protein LOC23251 [Homo sapiens]
          Length = 916

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 42  IHRCEAIYYSCLAEDEAVSWEMDELRELPGNGAARISRYDMGYSLKQSSRCPGQETRDC 100
           + + EA + SC ++ E  +    E    P N       +  GY ++QSS+C   + +DC
Sbjct: 112 VRKKEASFESCRSDTEICNAAECE----PLNCELSERSFSRGYPIRQSSKCRKMDCKDC 166


>gi|27477113 sterol regulatory element-binding transcription factor
           2 [Homo sapiens]
          Length = 1141

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 14  GRAGSQRDGNCQCNKASGQPWEQSLNIA 41
           G+A  Q+   C C +ASG  W  SLN++
Sbjct: 933 GKADGQQSSFCHCERASGHLW-SSLNVS 959


>gi|239749835 PREDICTED: hypothetical protein XP_002347183 [Homo
           sapiens]
          Length = 321

 Score = 28.1 bits (61), Expect = 4.7
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 85  SLKQSSRCPGQETRDCSRGSNNKNTVSNGAAWAGGWRRLAGMELVR 130
           S ++S RCP    R    G  +    + GAA  G +R LAG  L+R
Sbjct: 276 SAERSPRCPPGSPRKAGPGRRD----ARGAALGGAFRVLAGRALLR 317


>gi|239744125 PREDICTED: hypothetical protein XP_002343039 [Homo
           sapiens]
          Length = 321

 Score = 28.1 bits (61), Expect = 4.7
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 85  SLKQSSRCPGQETRDCSRGSNNKNTVSNGAAWAGGWRRLAGMELVR 130
           S ++S RCP    R    G  +    + GAA  G +R LAG  L+R
Sbjct: 276 SAERSPRCPPGSPRKAGPGRRD----ARGAALGGAFRVLAGRALLR 317


>gi|33383235 minichromosome maintenance complex component 10 isoform
           2 [Homo sapiens]
          Length = 874

 Score = 28.1 bits (61), Expect = 4.7
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 22  GNCQCNKASGQPWEQSLNIAIHRCEAIYYSCLAEDEAVSWEMDELRELPGNGAARISRYD 81
           G C+  K +G+P  Q++N  +  CE   Y   A+ + +S +  +L+     G        
Sbjct: 387 GTCKAKKKNGEPCTQTVN--LRDCEYCQYHVQAQYKKLSAKRADLQSTFSGGRIPKKFAR 444

Query: 82  MGYSLKQ 88
            G SLK+
Sbjct: 445 RGTSLKE 451


>gi|33383237 minichromosome maintenance complex component 10 isoform
           1 [Homo sapiens]
          Length = 875

 Score = 28.1 bits (61), Expect = 4.7
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 22  GNCQCNKASGQPWEQSLNIAIHRCEAIYYSCLAEDEAVSWEMDELRELPGNGAARISRYD 81
           G C+  K +G+P  Q++N  +  CE   Y   A+ + +S +  +L+     G        
Sbjct: 388 GTCKAKKKNGEPCTQTVN--LRDCEYCQYHVQAQYKKLSAKRADLQSTFSGGRIPKKFAR 445

Query: 82  MGYSLKQ 88
            G SLK+
Sbjct: 446 RGTSLKE 452


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.131    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,421,412
Number of Sequences: 37866
Number of extensions: 305058
Number of successful extensions: 606
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 601
Number of HSP's gapped (non-prelim): 10
length of query: 189
length of database: 18,247,518
effective HSP length: 96
effective length of query: 93
effective length of database: 14,612,382
effective search space: 1358951526
effective search space used: 1358951526
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.