Guide to the Human Genome
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Name: LOC100131965 Sequence: fasta or formatted (189aa) NCBI GI: 239747432
Description:

PREDICTED: hypothetical LOC100131965

Referenced in:

Sphingomyelin, Ceramides, and Glycolipids

Other entries for this name:
alt prot [75aa] PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         17           2
 C cysteine            3.7          7           1
 D aspartate           2.6          5           1
 E glutamate           6.9         13           2
 F phenylalanine       1.6          3           1
 G glycine             7.4         14           2
 H histidine           2.6          5           1
 I isoleucine          4.8          9           1
 K lysine              3.2          6           1
 L leucine             7.4         14           2
 M methionine          4.8          9           1
 N asparagine          4.8          9           2
 P proline             2.6          5           1
 Q glutamine           4.8          9           1
 R arginine            6.9         13           2
 S serine             10.1         19           2
 T threonine           3.2          6           1
 V valine              4.2          8           1
 W tryptophan          3.2          6           1
 X unknown             1.1          2           1
 Y tyrosine            5.3         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical LOC100131965 
C14orf147             0.221   hypothetical protein LOC171546 
C3orf57               0.057   ADMP 
TIGD7                 0.014   tigger transposable element derived 7 
KIAA1024              0.008   hypothetical protein LOC23251 
SREBF2                0.008   sterol regulatory element-binding transcription fact...
LOC100289737          0.008   PREDICTED: hypothetical protein XP_002347183 
LOC100288678          0.008   PREDICTED: hypothetical protein XP_002343039 
MCM10                 0.008   minichromosome maintenance complex component 10 isof...
MCM10                 0.008   minichromosome maintenance complex component 10 isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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