Search of human proteins with 239747341

Search of human proteins with 239747341

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239747341 PREDICTED: hypothetical protein [Homo sapiens]
         (221 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239747341 PREDICTED: hypothetical protein [Homo sapiens]           452   e-127
gi|239741166 PREDICTED: hypothetical protein [Homo sapiens]           452   e-127
gi|239749878 PREDICTED: hypothetical protein [Homo sapiens]            31   0.73 
gi|239744180 PREDICTED: hypothetical protein XP_002343069 [Homo ...    31   0.73 
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]         31   0.96 
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]               31   0.96 
gi|239750077 PREDICTED: hypothetical protein [Homo sapiens]            30   1.6  
gi|170650730 pituitary specific transcription factor 1 isoform b...    29   3.6  
gi|4507467 transforming growth factor, beta-induced, 68kDa precu...    29   3.6  
gi|28557729 hypothetical protein LOC283687 [Homo sapiens]              28   6.2  
gi|148806908 fibronectin type III domain containing 1 [Homo sapi...    28   8.1  

>gi|239747341 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 221

 Score =  452 bits (1162), Expect = e-127
 Identities = 221/221 (100%), Positives = 221/221 (100%)

Query: 1   MQFPEDAAARRLGSPVLLSAWPPTHTDVPARVLVRARHLRSRDRAAGPYAVDQAERGARR 60
           MQFPEDAAARRLGSPVLLSAWPPTHTDVPARVLVRARHLRSRDRAAGPYAVDQAERGARR
Sbjct: 1   MQFPEDAAARRLGSPVLLSAWPPTHTDVPARVLVRARHLRSRDRAAGPYAVDQAERGARR 60

Query: 61  PCQAVELVTETFDVVKRVQDDHVVATQAPFHGGSQSSTQCLLTGRIAVHRWVLCAQDSCV 120
           PCQAVELVTETFDVVKRVQDDHVVATQAPFHGGSQSSTQCLLTGRIAVHRWVLCAQDSCV
Sbjct: 61  PCQAVELVTETFDVVKRVQDDHVVATQAPFHGGSQSSTQCLLTGRIAVHRWVLCAQDSCV 120

Query: 121 VHHVHRAALGSQRHAQLFSTPALAAVRQPAKHHERHPLRERPLATALRQLPGCTRLRRKP 180
           VHHVHRAALGSQRHAQLFSTPALAAVRQPAKHHERHPLRERPLATALRQLPGCTRLRRKP
Sbjct: 121 VHHVHRAALGSQRHAQLFSTPALAAVRQPAKHHERHPLRERPLATALRQLPGCTRLRRKP 180

Query: 181 EVQTALPVSLDFYRPSCFYGNRSSTPARPRFSFLRKEIQRL 221
           EVQTALPVSLDFYRPSCFYGNRSSTPARPRFSFLRKEIQRL
Sbjct: 181 EVQTALPVSLDFYRPSCFYGNRSSTPARPRFSFLRKEIQRL 221


>gi|239741166 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 221

 Score =  452 bits (1162), Expect = e-127
 Identities = 221/221 (100%), Positives = 221/221 (100%)

Query: 1   MQFPEDAAARRLGSPVLLSAWPPTHTDVPARVLVRARHLRSRDRAAGPYAVDQAERGARR 60
           MQFPEDAAARRLGSPVLLSAWPPTHTDVPARVLVRARHLRSRDRAAGPYAVDQAERGARR
Sbjct: 1   MQFPEDAAARRLGSPVLLSAWPPTHTDVPARVLVRARHLRSRDRAAGPYAVDQAERGARR 60

Query: 61  PCQAVELVTETFDVVKRVQDDHVVATQAPFHGGSQSSTQCLLTGRIAVHRWVLCAQDSCV 120
           PCQAVELVTETFDVVKRVQDDHVVATQAPFHGGSQSSTQCLLTGRIAVHRWVLCAQDSCV
Sbjct: 61  PCQAVELVTETFDVVKRVQDDHVVATQAPFHGGSQSSTQCLLTGRIAVHRWVLCAQDSCV 120

Query: 121 VHHVHRAALGSQRHAQLFSTPALAAVRQPAKHHERHPLRERPLATALRQLPGCTRLRRKP 180
           VHHVHRAALGSQRHAQLFSTPALAAVRQPAKHHERHPLRERPLATALRQLPGCTRLRRKP
Sbjct: 121 VHHVHRAALGSQRHAQLFSTPALAAVRQPAKHHERHPLRERPLATALRQLPGCTRLRRKP 180

Query: 181 EVQTALPVSLDFYRPSCFYGNRSSTPARPRFSFLRKEIQRL 221
           EVQTALPVSLDFYRPSCFYGNRSSTPARPRFSFLRKEIQRL
Sbjct: 181 EVQTALPVSLDFYRPSCFYGNRSSTPARPRFSFLRKEIQRL 221


>gi|239749878 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 309

 Score = 31.2 bits (69), Expect = 0.73
 Identities = 56/202 (27%), Positives = 77/202 (38%), Gaps = 38/202 (18%)

Query: 22  PPTHTDVPARV---LVRARHLRSRD-------RAAGPYAVDQAERGARRPCQAVELVTET 71
           P  H D    V   LV  +HLR  +       RAAG + +  A+R AR     V+   ET
Sbjct: 113 PELHGDAEVVVQGELVAVQHLRPGEAVGLHERRAAGAHGL--AQRAAR-----VDGPVET 165

Query: 72  FDVVKRVQDDHVVATQAPFHGGSQSSTQCLLTGRIAVHRWVLCAQDSCVVHHVHRAALGS 131
               +R Q+D  +   A       ++   L  G+  V + V     + V H V    +G 
Sbjct: 166 DGRKERAQEDLRIRVAALGQQRQPAARLLLHFGQALVLQQV-GQPHALVAHRVAERQVGR 224

Query: 132 QRHA----------QLFSTPA-----LAAVRQPAKHHERHPLRERPLATALRQLP-GCTR 175
              A          Q    PA     LAA R+P +  ++   R RP A   R+ P GC  
Sbjct: 225 DVKALRRLGVGAAVQRLGLPAIVVVLLAARRRPVQRPQQQRQRGRPHAPPRRRRPHGCAL 284

Query: 176 LRRKPEVQTALPVSLDFYRPSC 197
            R  P      P +L   RP C
Sbjct: 285 SRCAPR----SPPTLGARRPRC 302


>gi|239744180 PREDICTED: hypothetical protein XP_002343069 [Homo
           sapiens]
          Length = 309

 Score = 31.2 bits (69), Expect = 0.73
 Identities = 56/202 (27%), Positives = 77/202 (38%), Gaps = 38/202 (18%)

Query: 22  PPTHTDVPARV---LVRARHLRSRD-------RAAGPYAVDQAERGARRPCQAVELVTET 71
           P  H D    V   LV  +HLR  +       RAAG + +  A+R AR     V+   ET
Sbjct: 113 PELHGDAEVVVQGELVAVQHLRPGEAVGLHERRAAGAHGL--AQRAAR-----VDGPVET 165

Query: 72  FDVVKRVQDDHVVATQAPFHGGSQSSTQCLLTGRIAVHRWVLCAQDSCVVHHVHRAALGS 131
               +R Q+D  +   A       ++   L  G+  V + V     + V H V    +G 
Sbjct: 166 DGRKERAQEDLRIRVAALGQQRQPAARLLLHFGQALVLQQV-GQPHALVAHRVAERQVGR 224

Query: 132 QRHA----------QLFSTPA-----LAAVRQPAKHHERHPLRERPLATALRQLP-GCTR 175
              A          Q    PA     LAA R+P +  ++   R RP A   R+ P GC  
Sbjct: 225 DVKALRRLGVGAAVQRLGLPAIVVVLLAARRRPVQRPQQQRQRGRPHAPPRRRRPHGCAL 284

Query: 176 LRRKPEVQTALPVSLDFYRPSC 197
            R  P      P +L   RP C
Sbjct: 285 SRCAPR----SPPTLGARRPRC 302


>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
          Length = 2968

 Score = 30.8 bits (68), Expect = 0.96
 Identities = 17/51 (33%), Positives = 28/51 (54%)

Query: 29  PARVLVRARHLRSRDRAAGPYAVDQAERGARRPCQAVELVTETFDVVKRVQ 79
           P ++  +AR  R+R+R AG   V QA  G+ RP    E + E   V++ ++
Sbjct: 387 PIQIASQARDARAREREAGRPGVLQAPPGSPRPLDRPEGLREKNSVIRSLK 437


>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
          Length = 1860

 Score = 30.8 bits (68), Expect = 0.96
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 7/93 (7%)

Query: 126 RAALGSQRHAQLFSTPALAAVRQPA-KHHERHPLRERPLATALRQLPGCTRLRRKP---E 181
           ++AL +Q+     S P  A V +PA K  +R+P   RP   + R LP  T   +KP    
Sbjct: 398 KSALPTQKQVPPTSRPVPARVSRPAEKPIQRNPGMPRPPPPSTRPLPPTTSSSKKPIPTL 457

Query: 182 VQTALPVSLDFYRPSCFYGNRSSTPARPRFSFL 214
            +T   ++    +P+     R+ST   P F+ L
Sbjct: 458 ARTEAKITSHASKPA---SARTSTHKPPPFTAL 487


>gi|239750077 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 903

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 16/44 (36%), Positives = 21/44 (47%)

Query: 18  LSAWPPTHTDVPARVLVRARHLRSRDRAAGPYAVDQAERGARRP 61
           L+ WPP       RVL+ A  + +R   A P  V  A  G +RP
Sbjct: 70  LALWPPRSASSELRVLLLALRVSARQVPAAPGCVTVAGTGHQRP 113


>gi|170650730 pituitary specific transcription factor 1 isoform beta
           [Homo sapiens]
          Length = 317

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 18/62 (29%), Positives = 24/62 (38%)

Query: 144 AAVRQPAKHHERHPLRERPLATALRQLPGCTRLRRKPEVQTALPVSLDFYRPSCFYGNRS 203
           AA   P  +H  + +   P   +L Q P C                L +  PSC YGN+ 
Sbjct: 31  AAECLPVSNHATNVMSTVPSILSLIQTPKCLCTHFSVTTLGNTATGLHYSVPSCHYGNQP 90

Query: 204 ST 205
           ST
Sbjct: 91  ST 92


>gi|4507467 transforming growth factor, beta-induced, 68kDa
           precursor [Homo sapiens]
          Length = 683

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 105 RIAVHRWVLCAQDSCVVHHVHRAALGSQRHAQLFSTPALAAVRQPAKHHERHPLRERPLA 164
           R+ V+R  LC ++SC+  H  R   G+        TP +  V    K   R       + 
Sbjct: 464 RVFVYRNSLCIENSCIAAHDKRGRYGTLFTMDRVLTPPMGTVMDVLKGDNRF-----SML 518

Query: 165 TALRQLPGCTRLRRKPEVQTALPVSLDFYR 194
            A  Q  G T    +  V T    + + +R
Sbjct: 519 VAAIQSAGLTETLNREGVYTVFAPTNEAFR 548


>gi|28557729 hypothetical protein LOC283687 [Homo sapiens]
          Length = 130

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 12/62 (19%)

Query: 2   QFPEDAAARR-LGSPVLLSAWPPTHTDVPARVLVRARHLRSRDRA---AGPYAVDQAERG 57
           Q PE   +R    SPVL S  PPT TD+P+         R+R R    +GP  + +A R 
Sbjct: 47  QHPEGPQSREGATSPVLASLEPPTPTDLPS--------ARARPRVPAESGPGWLHKARRP 98

Query: 58  AR 59
            R
Sbjct: 99  TR 100


>gi|148806908 fibronectin type III domain containing 1 [Homo sapiens]
          Length = 1894

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 20/91 (21%)

Query: 123  HVHRAALGS-QRHAQLFSTPALAAVRQPAKHHERHPLRERPLATALRQLPGCTRLRRKPE 181
            H  +A  GS  RHA    +PA    R PA   ++HP   R      R  PG     R P+
Sbjct: 963  HSPKAQPGSTDRHA----SPA----RPPAARSQQHPSVPR------RMTPG-----RAPQ 1003

Query: 182  VQTALPVSLDFYRPSCFYGNRSSTPARPRFS 212
             Q   PV+   + P     +   +P++PR S
Sbjct: 1004 QQPPPPVATSQHHPGPQSRDAGRSPSQPRLS 1034


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.134    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,095,027
Number of Sequences: 37866
Number of extensions: 405622
Number of successful extensions: 1142
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1136
Number of HSP's gapped (non-prelim): 12
length of query: 221
length of database: 18,247,518
effective HSP length: 98
effective length of query: 123
effective length of database: 14,536,650
effective search space: 1788007950
effective search space used: 1788007950
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.