Guide to the Human Genome
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Name: LOC100128489 Sequence: fasta or formatted (221aa) NCBI GI: 239741166
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {221aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.2         27           3
 C cysteine            2.7          6           1
 D aspartate           4.1          9           2
 E glutamate           3.6          8           1
 F phenylalanine       3.6          8           1
 G glycine             4.1          9           2
 H histidine           5.4         12           2
 I isoleucine          0.9          2           1
 K lysine              1.8          4           1
 L leucine             9.5         21           2
 M methionine          0.5          1           1
 N asparagine          0.5          1           1
 P proline             8.1         18           2
 Q glutamine           6.3         14           1
 R arginine           13.6         30           2
 S serine              6.3         14           2
 T threonine           5.4         12           1
 V valine              9.0         20           2
 W tryptophan          0.9          2           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128489          1.000   PREDICTED: hypothetical protein 
LOC100289281          0.014   PREDICTED: hypothetical protein 
LOC100289281          0.014   PREDICTED: hypothetical protein XP_002343069 
TNRC18                0.014   trinucleotide repeat containing 18 
COL27A1               0.014   collagen, type XXVII, alpha 1 
LOC100294358          0.012   PREDICTED: hypothetical protein 
POU1F1                0.009   pituitary specific transcription factor 1 isoform b...
TGFBI                 0.009   transforming growth factor, beta-induced, 68kDa precu...
C15orf37              0.007   hypothetical protein LOC283687 
FNDC1                 0.007   fibronectin type III domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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