Search of human proteins with 239747082

Search of human proteins with 239747082

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239747082 PREDICTED: hypothetical protein XP_002344489 [Homo
sapiens]
         (151 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239747082 PREDICTED: hypothetical protein XP_002344489 [Homo ...   310   3e-85
gi|16117794 ribosomal protein L36 [Homo sapiens]                      158   1e-39
gi|16117796 ribosomal protein L36 [Homo sapiens]                      158   1e-39
gi|156523966 class V alcohol dehydrogenase isoform 1 [Homo sapiens]    35   0.024
gi|4501939 class V alcohol dehydrogenase isoform 2 [Homo sapiens]      34   0.054
gi|78190486 Kv channel interacting protein 4 isoform 5 [Homo sap...    30   1.0  
gi|46195765 unc-13 homolog D [Homo sapiens]                            29   1.7  
gi|31377562 HAUS augmin-like complex, subunit 6 [Homo sapiens]         27   8.6  

>gi|239747082 PREDICTED: hypothetical protein XP_002344489 [Homo
           sapiens]
          Length = 151

 Score =  310 bits (794), Expect = 3e-85
 Identities = 151/151 (100%), Positives = 151/151 (100%)

Query: 1   MGELQSLRATKKVWYKLMLGRHIGPFVSAAFRHGCLWRAAAVALRYPMAMGLNKGHKVTK 60
           MGELQSLRATKKVWYKLMLGRHIGPFVSAAFRHGCLWRAAAVALRYPMAMGLNKGHKVTK
Sbjct: 1   MGELQSLRATKKVWYKLMLGRHIGPFVSAAFRHGCLWRAAAVALRYPMAMGLNKGHKVTK 60

Query: 61  NVSNPRHSCRRRCLTKHTKFVQDMIREVCGFAPYECHTMELQKVSKAMELLKTSKFIKKR 120
           NVSNPRHSCRRRCLTKHTKFVQDMIREVCGFAPYECHTMELQKVSKAMELLKTSKFIKKR
Sbjct: 61  NVSNPRHSCRRRCLTKHTKFVQDMIREVCGFAPYECHTMELQKVSKAMELLKTSKFIKKR 120

Query: 121 VGARMHIHAKRKREELSNVLAAMKKATAKKD 151
           VGARMHIHAKRKREELSNVLAAMKKATAKKD
Sbjct: 121 VGARMHIHAKRKREELSNVLAAMKKATAKKD 151


>gi|16117794 ribosomal protein L36 [Homo sapiens]
          Length = 105

 Score =  158 bits (400), Expect = 1e-39
 Identities = 86/110 (78%), Positives = 90/110 (81%), Gaps = 5/110 (4%)

Query: 42  VALRYPMAMGLNKGHKVTKNVSNPRHSCRRRCLTKHTKFVQDMIREVCGFAPYECHTMEL 101
           +ALRYPMA+GLNKGHKVTKNVS PRHS RR  LTKHTKFV+DMIREVCGFAPYE   MEL
Sbjct: 1   MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 60

Query: 102 QKVSKAMELLKTSKFIKKRVGARMHIHAKRKREELSNVLAAMKKATAKKD 151
            KVSK    L   KFIKKRVG   HI AKRKREELSNVLAAM+KA AKKD
Sbjct: 61  LKVSKDKRAL---KFIKKRVGT--HIRAKRKREELSNVLAAMRKAAAKKD 105


>gi|16117796 ribosomal protein L36 [Homo sapiens]
          Length = 105

 Score =  158 bits (400), Expect = 1e-39
 Identities = 86/110 (78%), Positives = 90/110 (81%), Gaps = 5/110 (4%)

Query: 42  VALRYPMAMGLNKGHKVTKNVSNPRHSCRRRCLTKHTKFVQDMIREVCGFAPYECHTMEL 101
           +ALRYPMA+GLNKGHKVTKNVS PRHS RR  LTKHTKFV+DMIREVCGFAPYE   MEL
Sbjct: 1   MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 60

Query: 102 QKVSKAMELLKTSKFIKKRVGARMHIHAKRKREELSNVLAAMKKATAKKD 151
            KVSK    L   KFIKKRVG   HI AKRKREELSNVLAAM+KA AKKD
Sbjct: 61  LKVSKDKRAL---KFIKKRVGT--HIRAKRKREELSNVLAAMRKAAAKKD 105


>gi|156523966 class V alcohol dehydrogenase isoform 1 [Homo sapiens]
          Length = 375

 Score = 35.0 bits (79), Expect = 0.024
 Identities = 16/40 (40%), Positives = 24/40 (60%)

Query: 79  KFVQDMIREVCGFAPYECHTMELQKVSKAMELLKTSKFIK 118
           K V D + E     P   HT+ L K+++A+EL+KT K I+
Sbjct: 331 KLVADYMAEKLNLDPLITHTLNLDKINEAVELMKTGKCIR 370


>gi|4501939 class V alcohol dehydrogenase isoform 2 [Homo sapiens]
          Length = 368

 Score = 33.9 bits (76), Expect = 0.054
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 79  KFVQDMIREVCGFAPYECHTMELQKVSKAMELLKTSKF 116
           K V D + E     P   HT+ L K+++A+EL+KT K+
Sbjct: 331 KLVADYMAEKLNLDPLITHTLNLDKINEAVELMKTGKW 368


>gi|78190486 Kv channel interacting protein 4 isoform 5 [Homo
           sapiens]
          Length = 225

 Score = 29.6 bits (65), Expect = 1.0
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 6/59 (10%)

Query: 69  CRRRCLTKHTKFVQDMIREVCGFAPYECHTMELQKVS-----KAMELLKT-SKFIKKRV 121
           CR+RC  +  KF Q ++R + G    +    EL+  +     +A+ELL+  SKF KK +
Sbjct: 4   CRKRCKREILKFAQYLLRLLTGSLHTDSVEDELEMATVRHRPEALELLEAQSKFTKKEL 62


>gi|46195765 unc-13 homolog D [Homo sapiens]
          Length = 1090

 Score = 28.9 bits (63), Expect = 1.7
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 87  EVCGFAPYECHTMELQKVSKAMELLKTS--KFIKKRVGARMHIHAKRKREELSNV-LAAM 143
           E CG  P   HT   Q + + +EL   S  + I+K   +R+   A+   EEL  V + A 
Sbjct: 860 EGCGLPPKALHTATFQALQRDLELQAASSRELIRKYFCSRIQQQAETTSEELGAVTVKAS 919

Query: 144 KKATAKK 150
            +A+ +K
Sbjct: 920 YRASEQK 926


>gi|31377562 HAUS augmin-like complex, subunit 6 [Homo sapiens]
          Length = 955

 Score = 26.6 bits (57), Expect = 8.6
 Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 5/112 (4%)

Query: 39  AAAVALRYPMAMGLNKGHKVTKNVS---NPRHSCRRRCLTKHTKFVQDMIREVCGFAPYE 95
           A  VA++Y  +   N  H   +  +      H C  RC    ++F+Q + R+ C    Y+
Sbjct: 132 ARFVAMKYIKSNSKNSSHHFVETFNIKPQDLHKCIARCHFARSRFLQILQRQDCVTQKYQ 191

Query: 96  CHTMELQKVSKAM--ELLKTSKFIKKRVGARMHIHAKRKREELSNVLAAMKK 145
            +     K  + +  E +     IKK      H + + K +++ ++ A++ +
Sbjct: 192 ENAQLSVKQVRNLRSECIGLENQIKKMEPYDDHSNMEEKIQKVRSLWASVNE 243


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.132    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,057,144
Number of Sequences: 37866
Number of extensions: 185786
Number of successful extensions: 577
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 568
Number of HSP's gapped (non-prelim): 8
length of query: 151
length of database: 18,247,518
effective HSP length: 93
effective length of query: 58
effective length of database: 14,725,980
effective search space: 854106840
effective search space used: 854106840
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.